Wall clock time and date at job start Tue Mar 31 2020 15:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99840 * 2 1 4 4 C 1.52992 * 109.46996 * 95.00266 * 3 2 1 5 5 C 1.50696 * 119.99984 * 180.02562 * 2 1 3 6 6 N 1.46897 * 109.47207 * 94.99731 * 5 2 1 7 7 C 1.46906 * 110.99999 * 179.97438 * 6 5 2 8 8 C 1.50704 * 109.46925 * 184.74391 * 7 6 5 9 9 C 1.35066 * 126.06972 * 105.39675 * 8 7 6 10 10 N 1.35055 * 107.98761 * 180.02562 * 9 8 7 11 11 C 1.46497 * 125.93281 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46962 * 124.99968 * 11 10 9 13 13 H 1.08006 * 119.99756 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00084 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00078 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00281 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46807 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46914 * 120.00331 * 16 14 12 19 19 H 1.48497 * 109.47110 * 240.00663 * 16 14 12 20 20 N 1.40073 * 108.13800 * 0.02562 * 10 9 8 21 21 C 1.31655 * 108.10531 * 359.97438 * 20 10 9 22 22 C 1.48360 * 126.04372 * 179.97438 * 21 20 10 23 23 C 1.39774 * 120.90310 * 137.17974 * 22 21 20 24 24 C 1.37959 * 119.02115 * 179.76027 * 23 22 21 25 25 N 1.31944 * 120.88130 * 0.52895 * 24 23 22 26 26 C 1.31940 * 121.99743 * 359.74652 * 25 24 23 27 27 C 1.37961 * 120.88536 * 359.97164 * 26 25 24 28 28 H 1.08001 * 119.99901 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00043 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46933 * 215.00018 * 3 2 1 31 31 H 1.08998 * 109.47011 * 334.99984 * 3 2 1 32 32 H 1.09001 * 109.46940 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47573 * 299.99640 * 4 3 2 34 34 H 1.08998 * 109.47471 * 59.99999 * 4 3 2 35 35 H 1.09003 * 109.47614 * 334.99645 * 5 2 1 36 36 H 1.09003 * 109.47402 * 214.99894 * 5 2 1 37 37 H 1.00905 * 111.00025 * 56.04912 * 6 5 2 38 38 H 1.09007 * 109.46673 * 64.75003 * 7 6 5 39 39 H 1.08991 * 109.47676 * 304.74884 * 7 6 5 40 40 H 1.07999 * 126.00788 * 0.02999 * 9 8 7 41 41 H 1.08999 * 109.47581 * 245.00628 * 11 10 9 42 42 H 1.09004 * 109.47095 * 5.00881 * 11 10 9 43 43 H 0.96998 * 120.00310 * 179.97438 * 15 14 12 44 44 H 1.08000 * 120.48944 * 0.02562 * 23 22 21 45 45 H 1.07994 * 119.56453 * 180.27256 * 24 23 22 46 46 H 1.07998 * 119.55369 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.48501 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4274 1.6839 1.4369 5 6 2.0635 -1.3051 -0.0006 6 7 2.4128 -1.6682 -1.3804 7 6 3.1506 -2.9380 -1.4200 8 6 3.5919 -3.2187 -2.8333 9 6 4.8485 -3.0965 -3.3132 10 7 4.8313 -3.4389 -4.6195 11 6 5.9857 -3.4468 -5.5214 12 6 6.1200 -4.8084 -6.1533 13 1 5.4156 -5.5895 -5.9078 14 6 7.1415 -5.0566 -7.0455 15 7 7.9989 -4.1052 -7.3447 16 14 7.3076 -6.7440 -7.8293 17 1 6.2254 -7.6302 -7.3304 18 1 7.2020 -6.6169 -9.3050 19 1 8.6272 -7.3263 -7.4757 20 7 3.5180 -3.7851 -4.9622 21 6 2.7670 -3.6542 -3.8889 22 6 1.3094 -3.9178 -3.8059 23 6 0.7641 -4.5989 -2.7139 24 6 -0.5973 -4.8186 -2.6741 25 7 -1.3790 -4.4047 -3.6531 26 6 -0.9037 -3.7634 -4.7037 27 6 0.4449 -3.4972 -4.8204 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.9742 1.1989 -0.5895 31 1 1.4386 2.0854 -0.4343 32 1 2.9728 2.6276 1.4369 33 1 1.5168 1.7902 2.0265 34 1 3.0524 0.9036 1.8712 35 1 1.4387 -2.0857 0.4334 36 1 2.9743 -1.1991 0.5889 37 1 2.9382 -0.9311 -1.8264 38 1 2.5041 -3.7447 -1.0742 39 1 4.0250 -2.8705 -0.7729 40 1 5.7149 -2.7805 -2.7510 41 1 5.8437 -2.6973 -6.3000 42 1 6.8895 -3.2176 -4.9568 43 1 8.7177 -4.2799 -7.9721 44 1 1.3986 -4.9442 -1.9110 45 1 -1.0285 -5.3400 -1.8323 46 1 -1.5795 -3.4426 -5.4826 47 1 0.8269 -2.9714 -5.6829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449733785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:40 Heat of formation + Delta-G solvation = 117.354637 kcal Electronic energy + Delta-G solvation = -26732.730258 eV Core-core repulsion = 23109.996168 eV Total energy + Delta-G solvation = -3622.734090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77016 -39.50598 -37.61146 -35.00557 -33.89645 -32.88009 -31.24297 -30.98424 -30.63242 -29.73125 -27.55687 -25.75451 -24.22056 -23.75165 -23.59949 -23.05128 -22.02115 -20.09146 -19.55790 -18.48914 -16.80649 -16.67461 -15.94608 -15.80300 -15.54462 -15.45049 -15.22829 -14.84658 -14.44001 -14.31783 -14.03588 -13.71128 -13.53173 -13.41971 -13.26496 -13.14428 -12.59684 -12.47189 -12.29240 -12.20146 -12.09288 -11.73730 -11.68913 -11.24582 -11.12137 -11.05498 -10.91511 -10.77144 -10.34749 -10.08631 -9.94904 -9.42901 -9.32177 -9.28170 -8.93783 -8.72509 -8.47803 -8.31599 -7.75361 -6.33152 -4.38609 1.31083 1.38426 2.09143 2.60351 3.16690 3.17626 3.25603 3.29825 3.39174 4.12144 4.24788 4.44909 4.61518 4.62462 4.75634 4.78226 5.01154 5.02437 5.04656 5.16010 5.19708 5.29776 5.30644 5.39075 5.42047 5.42927 5.57584 5.59320 5.68345 5.70094 5.70418 5.85199 5.91085 5.94277 5.96736 6.12953 6.16806 6.42713 6.50457 6.53694 6.76671 6.81492 6.89083 6.92391 7.05187 7.18593 7.43584 7.59916 7.75968 7.84718 8.15518 8.40373 8.69968 9.27980 10.75843 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003251 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.721380 B = 8609.945483 C =10590.308645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.146 4.146 5 C 0.094 3.906 6 N -0.676 5.676 7 C 0.143 3.857 8 C -0.246 4.246 9 C 0.056 3.944 10 N -0.317 5.317 11 C 0.255 3.745 12 C -0.531 4.531 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.281 1.281 20 N -0.258 5.258 21 C 0.084 3.916 22 C 0.070 3.930 23 C -0.149 4.149 24 C 0.094 3.906 25 N -0.494 5.494 26 C 0.095 3.905 27 C -0.150 4.150 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.341 0.659 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.165 0.835 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.800 7.416 15.622 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.123 4.123 3 C -0.128 4.128 4 C -0.203 4.203 5 C -0.034 4.034 6 N -0.307 5.307 7 C 0.014 3.986 8 C -0.259 4.259 9 C -0.095 4.095 10 N -0.097 5.097 11 C 0.138 3.862 12 C -0.569 4.569 13 H 0.088 0.912 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.083 5.083 21 C -0.079 4.079 22 C 0.060 3.940 23 C -0.170 4.170 24 C -0.063 4.063 25 N -0.203 5.203 26 C -0.061 4.061 27 C -0.171 4.171 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.159 0.841 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.182 0.818 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.150 0.850 45 H 0.168 0.832 46 H 0.170 0.830 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.905 6.678 14.061 20.219 hybrid contribution 2.250 -0.105 0.556 2.320 sum -10.654 6.573 14.616 19.244 Atomic orbital electron populations 1.23669 0.95195 1.01638 1.00542 1.21602 0.95401 0.94852 1.00479 1.20598 1.00098 0.94706 0.97377 1.21724 1.01393 1.01072 0.96105 1.20935 0.97972 0.94235 0.90282 1.60606 1.49254 1.05319 1.15547 1.20108 0.95184 0.91721 0.91551 1.19587 0.92213 1.17462 0.96605 1.22262 0.98496 1.01767 0.86941 1.49429 1.07457 1.45033 1.07771 1.19808 0.78431 0.99680 0.88272 1.21262 1.13340 0.96237 1.26044 0.91206 1.24939 0.95066 0.98011 0.95948 1.69921 1.16034 1.32736 1.34527 0.86271 0.78104 0.83079 0.79095 1.19479 1.20576 1.20696 1.77696 0.88807 1.20327 1.21434 1.20256 0.92377 1.03189 0.92050 1.18045 0.89336 0.93364 0.93250 1.22055 0.96417 0.99816 0.98700 1.22511 0.90023 0.97078 0.96665 1.67582 1.40279 1.10646 1.01835 1.22561 0.93222 0.94933 0.95427 1.22210 0.94262 1.01149 0.99497 0.88831 0.88364 0.91482 0.91442 0.92659 0.92712 0.92699 0.90766 0.95061 0.84099 0.90762 0.95081 0.81750 0.93480 0.92618 0.92279 0.84997 0.83152 0.83036 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 13.88 29.01 0.40 -1.23 16 2 C -0.12 -1.17 4.82 -101.07 -0.49 -1.66 16 3 C -0.09 -0.76 6.10 -27.89 -0.17 -0.93 16 4 C -0.15 -1.06 9.89 37.15 0.37 -0.69 16 5 C 0.09 0.94 5.84 -4.98 -0.03 0.91 16 6 N -0.68 -8.02 6.51 -116.33 -0.76 -8.78 16 7 C 0.14 1.80 5.70 -4.97 -0.03 1.77 16 8 C -0.25 -4.00 5.56 -104.75 -0.58 -4.58 16 9 C 0.06 0.98 11.32 -17.26 -0.20 0.78 16 10 N -0.32 -6.88 3.67 -62.58 -0.23 -7.11 16 11 C 0.26 6.22 6.26 -5.19 -0.03 6.18 16 12 C -0.53 -14.39 9.23 -34.44 -0.32 -14.71 16 13 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 16 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 N -0.26 -5.70 12.44 33.42 0.42 -5.28 16 21 C 0.08 1.56 6.72 -82.78 -0.56 1.01 16 22 C 0.07 1.14 5.77 -104.58 -0.60 0.54 16 23 C -0.15 -2.05 9.01 -39.11 -0.35 -2.41 16 24 C 0.09 1.21 11.17 -17.61 -0.20 1.01 16 25 N -0.49 -7.06 10.35 -13.35 -0.14 -7.20 16 26 C 0.09 1.30 11.17 -17.61 -0.20 1.11 16 27 C -0.15 -2.30 9.89 -39.11 -0.39 -2.69 16 28 H 0.09 0.79 7.99 -52.49 -0.42 0.37 16 29 H 0.10 0.95 7.99 -52.49 -0.42 0.53 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.55 7.99 -51.93 -0.41 0.14 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.73 7.99 -51.93 -0.41 0.31 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.34 4.18 8.65 -39.29 -0.34 3.84 16 38 H 0.07 0.90 5.82 -51.92 -0.30 0.59 16 39 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 40 H 0.17 2.36 8.06 -52.49 -0.42 1.93 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 45 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 46 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -29.90 401.03 -9.67 -39.57 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.25 Total: 4.70 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.46 Total: -13.97 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.03 Total: -52.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.90 -9.67 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449733785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.925 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds