Wall clock time and date at job start Tue Mar 31 2020 15:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99840 * 2 1 4 4 C 1.52992 * 109.46996 * 95.00266 * 3 2 1 5 5 C 1.50696 * 119.99984 * 180.02562 * 2 1 3 6 6 N 1.46897 * 109.47207 * 94.99731 * 5 2 1 7 7 C 1.46906 * 110.99999 * 179.97438 * 6 5 2 8 8 C 1.50704 * 109.46925 * 184.74391 * 7 6 5 9 9 C 1.35066 * 126.06972 * 105.39675 * 8 7 6 10 10 N 1.35055 * 107.98761 * 180.02562 * 9 8 7 11 11 C 1.46497 * 125.93281 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46962 * 124.99968 * 11 10 9 13 13 H 1.08006 * 119.99756 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00084 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00078 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00281 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46807 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46914 * 120.00331 * 16 14 12 19 19 H 1.48497 * 109.47110 * 240.00663 * 16 14 12 20 20 N 1.40073 * 108.13800 * 0.02562 * 10 9 8 21 21 C 1.31655 * 108.10531 * 359.97438 * 20 10 9 22 22 C 1.48360 * 126.04372 * 179.97438 * 21 20 10 23 23 C 1.39774 * 120.90310 * 137.17974 * 22 21 20 24 24 C 1.37959 * 119.02115 * 179.76027 * 23 22 21 25 25 N 1.31944 * 120.88130 * 0.52895 * 24 23 22 26 26 C 1.31940 * 121.99743 * 359.74652 * 25 24 23 27 27 C 1.37961 * 120.88536 * 359.97164 * 26 25 24 28 28 H 1.08001 * 119.99901 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00043 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46933 * 215.00018 * 3 2 1 31 31 H 1.08998 * 109.47011 * 334.99984 * 3 2 1 32 32 H 1.09001 * 109.46940 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47573 * 299.99640 * 4 3 2 34 34 H 1.08998 * 109.47471 * 59.99999 * 4 3 2 35 35 H 1.09003 * 109.47614 * 334.99645 * 5 2 1 36 36 H 1.09003 * 109.47402 * 214.99894 * 5 2 1 37 37 H 1.00905 * 111.00025 * 56.04912 * 6 5 2 38 38 H 1.09007 * 109.46673 * 64.75003 * 7 6 5 39 39 H 1.08991 * 109.47676 * 304.74884 * 7 6 5 40 40 H 1.07999 * 126.00788 * 0.02999 * 9 8 7 41 41 H 1.08999 * 109.47581 * 245.00628 * 11 10 9 42 42 H 1.09004 * 109.47095 * 5.00881 * 11 10 9 43 43 H 0.96998 * 120.00310 * 179.97438 * 15 14 12 44 44 H 1.08000 * 120.48944 * 0.02562 * 23 22 21 45 45 H 1.07994 * 119.56453 * 180.27256 * 24 23 22 46 46 H 1.07998 * 119.55369 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.48501 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4274 1.6839 1.4369 5 6 2.0635 -1.3051 -0.0006 6 7 2.4128 -1.6682 -1.3804 7 6 3.1506 -2.9380 -1.4200 8 6 3.5919 -3.2187 -2.8333 9 6 4.8485 -3.0965 -3.3132 10 7 4.8313 -3.4389 -4.6195 11 6 5.9857 -3.4468 -5.5214 12 6 6.1200 -4.8084 -6.1533 13 1 5.4156 -5.5895 -5.9078 14 6 7.1415 -5.0566 -7.0455 15 7 7.9989 -4.1052 -7.3447 16 14 7.3076 -6.7440 -7.8293 17 1 6.2254 -7.6302 -7.3304 18 1 7.2020 -6.6169 -9.3050 19 1 8.6272 -7.3263 -7.4757 20 7 3.5180 -3.7851 -4.9622 21 6 2.7670 -3.6542 -3.8889 22 6 1.3094 -3.9178 -3.8059 23 6 0.7641 -4.5989 -2.7139 24 6 -0.5973 -4.8186 -2.6741 25 7 -1.3790 -4.4047 -3.6531 26 6 -0.9037 -3.7634 -4.7037 27 6 0.4449 -3.4972 -4.8204 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 2.9742 1.1989 -0.5895 31 1 1.4386 2.0854 -0.4343 32 1 2.9728 2.6276 1.4369 33 1 1.5168 1.7902 2.0265 34 1 3.0524 0.9036 1.8712 35 1 1.4387 -2.0857 0.4334 36 1 2.9743 -1.1991 0.5889 37 1 2.9382 -0.9311 -1.8264 38 1 2.5041 -3.7447 -1.0742 39 1 4.0250 -2.8705 -0.7729 40 1 5.7149 -2.7805 -2.7510 41 1 5.8437 -2.6973 -6.3000 42 1 6.8895 -3.2176 -4.9568 43 1 8.7177 -4.2799 -7.9721 44 1 1.3986 -4.9442 -1.9110 45 1 -1.0285 -5.3400 -1.8323 46 1 -1.5795 -3.4426 -5.4826 47 1 0.8269 -2.9714 -5.6829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449733785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:40 Heat of formation + Delta-G solvation = 100.216206 kcal Electronic energy + Delta-G solvation = -26733.473436 eV Core-core repulsion = 23109.996168 eV Total energy + Delta-G solvation = -3623.477268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18252 -40.65402 -38.41387 -36.19290 -35.39281 -34.41576 -32.50893 -32.19662 -31.69393 -30.80735 -29.17898 -26.91551 -25.78861 -24.67290 -24.36678 -24.19785 -23.42746 -21.50511 -20.87703 -19.29235 -18.69328 -18.04718 -17.21429 -16.99851 -16.65960 -16.51598 -16.22281 -16.05209 -15.92672 -15.35681 -15.15853 -14.81745 -14.67843 -14.62458 -14.35863 -14.14174 -14.01884 -13.68709 -13.66873 -13.28178 -13.10014 -12.90112 -12.84380 -12.69268 -12.56238 -12.44726 -12.25146 -11.79066 -11.74912 -11.55214 -11.43952 -10.90210 -10.75681 -10.42345 -10.05274 -10.01387 -9.91517 -9.29190 -9.13881 -8.38599 -6.52233 0.10806 0.30342 1.13403 1.33107 1.35192 1.37570 1.47979 1.78833 1.89262 2.30977 2.93722 3.00389 3.45093 3.57166 3.65992 3.86147 3.92013 4.02170 4.09857 4.19817 4.23093 4.26659 4.35082 4.40531 4.53465 4.55812 4.65451 4.67361 4.75012 4.83854 4.85907 4.88299 4.94998 5.01667 5.02824 5.08733 5.09992 5.17116 5.21312 5.37818 5.45507 5.53927 5.70383 5.77932 5.80595 5.81892 6.04403 6.15260 6.25315 6.48711 6.59278 6.92813 7.07666 7.18266 8.69610 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003251 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.721380 B = 8609.945483 C =10590.308645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.129 4.129 3 C -0.090 4.090 4 C -0.142 4.142 5 C 0.098 3.902 6 N -0.684 5.684 7 C 0.150 3.850 8 C -0.234 4.234 9 C 0.051 3.949 10 N -0.345 5.345 11 C 0.272 3.728 12 C -0.547 4.547 13 H 0.050 0.950 14 C 0.021 3.979 15 N -0.919 5.919 16 Si 0.969 3.031 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.267 1.267 20 N -0.314 5.314 21 C 0.089 3.911 22 C 0.045 3.955 23 C -0.145 4.145 24 C 0.100 3.900 25 N -0.504 5.504 26 C 0.098 3.902 27 C -0.165 4.165 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.337 0.663 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.195 0.805 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.273 0.727 44 H 0.149 0.851 45 H 0.187 0.813 46 H 0.178 0.822 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 6.919 17.678 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.129 4.129 3 C -0.128 4.128 4 C -0.199 4.199 5 C -0.030 4.030 6 N -0.315 5.315 7 C 0.021 3.979 8 C -0.246 4.246 9 C -0.097 4.097 10 N -0.125 5.125 11 C 0.153 3.847 12 C -0.585 4.585 13 H 0.068 0.932 14 C -0.180 4.180 15 N -0.558 5.558 16 Si 0.793 3.207 17 H -0.201 1.201 18 H -0.199 1.199 19 H -0.192 1.192 20 N -0.138 5.138 21 C -0.075 4.075 22 C 0.035 3.965 23 C -0.166 4.166 24 C -0.057 4.057 25 N -0.214 5.214 26 C -0.058 4.058 27 C -0.186 4.186 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.155 0.845 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.212 0.788 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.167 0.833 45 H 0.204 0.796 46 H 0.195 0.805 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.958 6.194 16.141 22.220 hybrid contribution 2.438 0.088 -0.001 2.440 sum -11.520 6.282 16.139 20.800 Atomic orbital electron populations 1.23766 0.95308 1.01959 1.00417 1.21696 0.95533 0.95137 1.00570 1.20607 0.99784 0.94285 0.98107 1.21696 1.01582 1.01411 0.95256 1.20940 0.98435 0.94520 0.89127 1.60570 1.49040 1.04906 1.16952 1.20115 0.96205 0.92445 0.89110 1.19985 0.91178 1.15524 0.97910 1.22885 1.00284 1.00920 0.85601 1.49107 1.06868 1.47670 1.08863 1.19308 0.79683 0.97566 0.88154 1.21392 1.13186 0.97025 1.26930 0.93209 1.25701 0.94641 1.01462 0.96196 1.69989 1.16446 1.34336 1.34990 0.85342 0.78260 0.78802 0.78290 1.20102 1.19907 1.19219 1.77613 0.89421 1.22979 1.23835 1.20777 0.93447 1.01423 0.91805 1.18216 0.88259 0.95205 0.94821 1.22235 0.97150 0.99040 0.98155 1.23087 0.89539 0.95991 0.97041 1.67689 1.40642 1.10838 1.02230 1.22911 0.92795 0.94170 0.95926 1.22245 0.95170 1.01953 0.99281 0.88032 0.88632 0.91899 0.91398 0.91960 0.92476 0.92692 0.90357 0.94153 0.84509 0.89768 0.93281 0.78782 0.96257 0.92422 0.91776 0.83345 0.79579 0.80532 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 13.88 67.78 0.94 -2.10 16 2 C -0.13 -2.23 4.82 -16.49 -0.08 -2.31 16 3 C -0.09 -1.39 6.10 29.85 0.18 -1.21 16 4 C -0.14 -1.81 9.89 71.98 0.71 -1.10 16 5 C 0.10 1.72 5.84 85.56 0.50 2.22 16 6 N -0.68 -14.96 6.51 -521.97 -3.40 -18.36 16 7 C 0.15 3.43 5.70 85.56 0.49 3.92 16 8 C -0.23 -7.42 5.56 -19.95 -0.11 -7.53 16 9 C 0.05 1.80 11.32 83.47 0.94 2.75 16 10 N -0.35 -15.50 3.67 -351.92 -1.29 -16.79 16 11 C 0.27 13.83 6.26 85.63 0.54 14.37 16 12 C -0.55 -30.71 9.23 25.60 0.24 -30.47 16 13 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 14 C 0.02 1.13 5.46 84.65 0.46 1.60 16 15 N -0.92 -51.67 13.29 21.45 0.28 -51.38 16 16 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 N -0.31 -14.45 12.44 -48.17 -0.60 -15.05 16 21 C 0.09 3.34 6.72 42.51 0.29 3.63 16 22 C 0.04 1.44 5.77 -19.84 -0.11 1.33 16 23 C -0.14 -3.71 9.01 22.58 0.20 -3.51 16 24 C 0.10 2.29 11.17 84.61 0.95 3.23 16 25 N -0.50 -13.28 10.35 -196.14 -2.03 -15.31 16 26 C 0.10 2.57 11.17 84.61 0.95 3.51 16 27 C -0.17 -5.09 9.89 22.57 0.22 -4.86 16 28 H 0.10 1.55 7.99 -2.91 -0.02 1.53 16 29 H 0.10 1.68 7.99 -2.91 -0.02 1.66 16 30 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 31 H 0.07 1.03 7.99 -2.39 -0.02 1.01 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 1.32 7.99 -2.39 -0.02 1.30 16 36 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.34 7.84 8.65 -89.69 -0.78 7.06 16 38 H 0.08 1.78 5.82 -2.38 -0.01 1.77 16 39 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 40 H 0.20 5.34 8.06 -2.91 -0.02 5.31 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 2.85 8.07 -2.38 -0.02 2.83 16 43 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.15 3.23 6.30 -2.91 -0.02 3.21 16 45 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 46 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 47 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -65.99 401.03 2.48 -63.51 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.19 Total: 24.25 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 7.30 Total: -16.54 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -7.03 Total: -116.89 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.99 2.48 -63.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449733785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.725 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds