Wall clock time and date at job start Tue Mar 31 2020 14:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00321 * 2 1 4 4 C 1.50709 * 109.47303 * 270.00088 * 3 2 1 5 5 H 1.07997 * 119.99555 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00071 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99865 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99960 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47153 * 90.00229 * 8 6 4 10 10 H 1.48506 * 109.46993 * 210.00128 * 8 6 4 11 11 H 1.48499 * 109.47508 * 329.99881 * 8 6 4 12 12 C 1.34784 * 119.99924 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99642 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99725 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.46936 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.47340 * 179.97438 * 15 14 12 17 17 C 1.46834 * 111.00210 * 293.95631 * 16 15 14 18 18 C 1.53042 * 109.58034 * 186.02253 * 17 16 15 19 19 C 1.53148 * 109.25453 * 300.61468 * 18 17 16 20 20 C 1.52983 * 109.13191 * 57.33298 * 19 18 17 21 21 C 1.54249 * 109.55452 * 182.41828 * 20 19 18 22 22 C 1.55164 * 106.63402 * 193.29092 * 21 20 19 23 23 S 1.83466 * 102.41216 * 41.91755 * 22 21 20 24 24 C 1.54151 * 109.32299 * 62.82468 * 20 19 18 25 25 C 1.46880 * 110.99408 * 58.15683 * 16 15 14 26 26 H 1.09002 * 109.46906 * 269.99875 * 1 2 3 27 27 H 1.08999 * 109.46705 * 30.00207 * 1 2 3 28 28 H 1.09003 * 109.46871 * 149.99775 * 1 2 3 29 29 H 1.09000 * 109.47290 * 29.99764 * 3 2 1 30 30 H 1.08999 * 109.47570 * 149.99749 * 3 2 1 31 31 H 0.97000 * 119.99953 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47734 * 60.00358 * 14 12 2 33 33 H 1.09004 * 109.47450 * 299.99566 * 14 12 2 34 34 H 1.09006 * 109.47273 * 59.99982 * 15 14 12 35 35 H 1.09001 * 109.47595 * 300.00157 * 15 14 12 36 36 H 1.08999 * 109.45145 * 65.98599 * 17 16 15 37 37 H 1.09001 * 109.45300 * 306.05838 * 17 16 15 38 38 H 1.09005 * 109.49864 * 180.68412 * 18 17 16 39 39 H 1.08996 * 109.53987 * 60.57589 * 18 17 16 40 40 H 1.09004 * 109.53049 * 297.44157 * 19 18 17 41 41 H 1.08999 * 109.58893 * 177.26603 * 19 18 17 42 42 H 1.08996 * 110.22430 * 73.94576 * 21 20 19 43 43 H 1.08997 * 109.98079 * 312.49737 * 21 20 19 44 44 H 1.09002 * 110.85398 * 283.63137 * 22 21 20 45 45 H 1.09001 * 110.85088 * 160.20527 * 22 21 20 46 46 H 1.09003 * 110.40746 * 28.88200 * 24 20 19 47 47 H 1.08999 * 110.40841 * 266.44552 * 24 20 19 48 48 H 1.08992 * 109.47471 * 54.51974 * 25 16 15 49 49 H 1.09005 * 109.46801 * 294.53246 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2578 -2.9127 8 14 3.7318 3.9298 -0.2530 9 1 5.1052 3.5091 0.1241 10 1 3.7468 5.3564 -0.6650 11 1 2.8252 3.7602 0.9108 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 0.9003 -5.0846 1.2542 18 6 0.2712 -6.4794 1.2841 19 6 -0.6718 -6.6339 0.0872 20 6 0.1120 -6.3884 -1.2035 21 6 -0.8417 -6.4818 -2.4122 22 6 0.0522 -6.5660 -3.6777 23 16 1.3776 -7.7188 -3.1483 24 6 1.2126 -7.4586 -1.3432 25 6 0.7550 -5.0018 -1.1634 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 3.8211 4.0840 -3.0900 32 1 0.7591 -2.5303 -0.8896 33 1 0.7584 -2.5299 0.8903 34 1 3.0063 -3.5775 0.8905 35 1 3.0063 -3.5776 -0.8894 36 1 0.1156 -4.3308 1.3197 37 1 1.5801 -4.9747 2.0991 38 1 -0.2914 -6.6050 2.2093 39 1 1.0554 -7.2343 1.2296 40 1 -1.4815 -5.9084 0.1653 41 1 -1.0858 -7.6421 0.0760 42 1 -1.4749 -5.5960 -2.4619 43 1 -1.4584 -7.3769 -2.3318 44 1 0.4649 -5.5885 -3.9271 45 1 -0.5053 -6.9762 -4.5198 46 1 0.9085 -8.3830 -0.8522 47 1 2.1511 -7.0955 -0.9242 48 1 1.3309 -4.8421 -2.0749 49 1 -0.0235 -4.2426 -1.0881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451984696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:25 Heat of formation + Delta-G solvation = -37.472121 kcal Electronic energy + Delta-G solvation = -26708.692259 eV Core-core repulsion = 23182.395577 eV Total energy + Delta-G solvation = -3526.296682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38707 -39.03076 -36.17739 -34.95157 -33.39368 -32.56114 -30.31491 -29.99904 -28.30073 -27.36692 -26.08602 -25.27408 -24.36809 -22.78975 -21.82766 -20.81005 -19.06825 -18.23916 -17.01712 -16.99213 -16.51909 -15.94676 -15.61582 -15.43752 -15.19263 -15.15491 -14.48931 -14.32960 -14.03487 -13.82494 -13.36372 -13.26592 -13.05175 -12.76359 -12.61935 -12.44445 -12.29093 -12.17570 -12.16408 -12.01183 -11.95548 -11.77273 -11.47726 -11.38086 -11.12467 -10.97171 -10.76903 -10.63682 -10.54684 -10.51124 -10.17083 -9.99964 -9.57244 -9.07805 -8.61192 -8.43740 -7.80877 -7.74602 -6.10958 -4.10013 1.68990 2.23525 3.27361 3.29574 3.33327 3.35154 3.62883 3.88930 4.12040 4.24067 4.37524 4.40174 4.64844 4.70705 4.77093 4.86855 4.96074 5.05438 5.06670 5.10256 5.23251 5.23479 5.25696 5.33359 5.33802 5.38288 5.43410 5.48236 5.52431 5.55651 5.60121 5.67092 5.70996 5.76868 5.81707 5.90770 5.95394 5.99811 6.09173 6.25577 6.65408 6.87914 6.93155 6.95269 7.29317 7.58402 8.20330 8.44351 8.89446 8.95086 9.49166 11.02439 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.002788 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.716521 B =10038.994730 C =10666.095840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.509 3.491 13 O -0.540 6.540 14 C -0.176 4.176 15 C 0.073 3.927 16 N -0.531 5.531 17 C 0.048 3.952 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.072 4.072 23 S -0.307 6.307 24 C -0.050 4.050 25 C 0.059 3.941 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.114 0.886 48 H 0.082 0.918 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 -21.684 6.871 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.332 5.332 3 C 0.095 3.905 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.417 6.417 14 C -0.217 4.217 15 C -0.055 4.055 16 N -0.254 5.254 17 C -0.079 4.079 18 C -0.156 4.156 19 C -0.143 4.143 20 C -0.064 4.064 21 C -0.157 4.157 22 C -0.220 4.220 23 S -0.081 6.081 24 C -0.198 4.198 25 C -0.069 4.069 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.104 0.896 47 H 0.132 0.868 48 H 0.100 0.900 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.073 -22.606 6.088 25.898 hybrid contribution -1.174 2.174 1.161 2.730 sum -12.247 -20.432 7.250 24.900 Atomic orbital electron populations 1.21630 0.81116 1.02849 1.00286 1.47871 1.06187 1.07277 1.71817 1.19660 0.92441 0.80077 0.98372 1.21318 1.37107 1.07157 0.91232 0.90853 1.24865 0.95205 0.97357 0.95609 1.69897 1.41434 1.23550 1.18662 0.86836 0.80148 0.79743 0.82869 1.19847 1.21039 1.19118 1.20236 0.88054 0.84952 0.77223 1.90676 1.13868 1.87237 1.49928 1.22357 1.00800 0.95171 1.03417 1.21995 0.94910 0.83822 1.04776 1.62193 1.27741 1.33520 1.01904 1.22153 0.96791 0.96386 0.92617 1.21629 0.98814 0.97474 0.97666 1.21608 0.97572 1.01956 0.93204 1.21454 0.93979 0.95265 0.95672 1.22692 0.97760 1.03669 0.91589 1.24240 0.96379 1.00950 1.00424 1.87644 1.51692 1.59872 1.08925 1.24133 1.02960 1.00535 0.92171 1.22185 0.95416 0.94547 0.94737 0.93782 0.90567 0.92420 0.95332 0.94553 0.92528 0.89403 0.89750 0.89702 0.89442 0.94546 0.90474 0.91367 0.90881 0.91648 0.91406 0.89698 0.90102 0.88984 0.88146 0.89593 0.86783 0.89988 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 10.24 59.85 0.61 1.89 16 2 N -0.60 -12.19 2.86 -182.95 -0.52 -12.71 16 3 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 4 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 8 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 12 C 0.51 10.06 7.67 -10.98 -0.08 9.98 16 13 O -0.54 -13.01 15.56 5.56 0.09 -12.92 16 14 C -0.18 -2.39 3.55 -27.89 -0.10 -2.48 16 15 C 0.07 0.96 4.65 -3.82 -0.02 0.94 16 16 N -0.53 -5.49 3.93 -234.73 -0.92 -6.41 16 17 C 0.05 0.42 5.04 -3.84 -0.02 0.40 16 18 C -0.12 -0.81 5.85 -26.63 -0.16 -0.96 16 19 C -0.10 -0.68 4.66 -26.66 -0.12 -0.80 16 20 C -0.06 -0.48 0.54 -153.31 -0.08 -0.56 16 21 C -0.12 -0.81 5.27 -24.93 -0.13 -0.94 16 22 C -0.07 -0.59 6.87 38.30 0.26 -0.33 16 23 S -0.31 -3.29 23.26 -107.50 -2.50 -5.79 16 24 C -0.05 -0.45 5.11 37.76 0.19 -0.26 16 25 C 0.06 0.56 3.39 -3.89 -0.01 0.55 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 29 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 30 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 32 H 0.09 1.11 5.76 -51.93 -0.30 0.81 16 33 H 0.08 0.97 6.65 -51.93 -0.35 0.63 16 34 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 35 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.04 0.31 6.76 -51.93 -0.35 -0.04 16 37 H 0.08 0.67 8.06 -51.93 -0.42 0.26 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.53 7.36 -51.93 -0.38 0.15 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 42 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 43 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 44 H 0.09 0.79 7.53 -51.93 -0.39 0.40 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.69 7.84 -51.93 -0.41 0.29 16 47 H 0.11 1.19 7.15 -51.93 -0.37 0.82 16 48 H 0.08 0.91 7.14 -51.93 -0.37 0.53 16 49 H 0.04 0.40 6.59 -51.93 -0.34 0.05 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -33.66 378.94 -10.70 -44.37 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.54 Total: -1.29 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.12 Total: -0.94 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.67 Total: -46.07 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.50 Total: -5.79 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.66 -10.70 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451984696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.895 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds