Wall clock time and date at job start Tue Mar 31 2020 14:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00321 * 2 1 4 4 C 1.50709 * 109.47303 * 270.00088 * 3 2 1 5 5 H 1.07997 * 119.99555 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00071 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99865 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 119.99960 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47153 * 90.00229 * 8 6 4 10 10 H 1.48506 * 109.46993 * 210.00128 * 8 6 4 11 11 H 1.48499 * 109.47508 * 329.99881 * 8 6 4 12 12 C 1.34784 * 119.99924 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99642 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99725 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.46936 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.47340 * 179.97438 * 15 14 12 17 17 C 1.46834 * 111.00210 * 293.95631 * 16 15 14 18 18 C 1.53042 * 109.58034 * 186.02253 * 17 16 15 19 19 C 1.53148 * 109.25453 * 300.61468 * 18 17 16 20 20 C 1.52983 * 109.13191 * 57.33298 * 19 18 17 21 21 C 1.54249 * 109.55452 * 182.41828 * 20 19 18 22 22 C 1.55164 * 106.63402 * 193.29092 * 21 20 19 23 23 S 1.83466 * 102.41216 * 41.91755 * 22 21 20 24 24 C 1.54151 * 109.32299 * 62.82468 * 20 19 18 25 25 C 1.46880 * 110.99408 * 58.15683 * 16 15 14 26 26 H 1.09002 * 109.46906 * 269.99875 * 1 2 3 27 27 H 1.08999 * 109.46705 * 30.00207 * 1 2 3 28 28 H 1.09003 * 109.46871 * 149.99775 * 1 2 3 29 29 H 1.09000 * 109.47290 * 29.99764 * 3 2 1 30 30 H 1.08999 * 109.47570 * 149.99749 * 3 2 1 31 31 H 0.97000 * 119.99953 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47734 * 60.00358 * 14 12 2 33 33 H 1.09004 * 109.47450 * 299.99566 * 14 12 2 34 34 H 1.09006 * 109.47273 * 59.99982 * 15 14 12 35 35 H 1.09001 * 109.47595 * 300.00157 * 15 14 12 36 36 H 1.08999 * 109.45145 * 65.98599 * 17 16 15 37 37 H 1.09001 * 109.45300 * 306.05838 * 17 16 15 38 38 H 1.09005 * 109.49864 * 180.68412 * 18 17 16 39 39 H 1.08996 * 109.53987 * 60.57589 * 18 17 16 40 40 H 1.09004 * 109.53049 * 297.44157 * 19 18 17 41 41 H 1.08999 * 109.58893 * 177.26603 * 19 18 17 42 42 H 1.08996 * 110.22430 * 73.94576 * 21 20 19 43 43 H 1.08997 * 109.98079 * 312.49737 * 21 20 19 44 44 H 1.09002 * 110.85398 * 283.63137 * 22 21 20 45 45 H 1.09001 * 110.85088 * 160.20527 * 22 21 20 46 46 H 1.09003 * 110.40746 * 28.88200 * 24 20 19 47 47 H 1.08999 * 110.40841 * 266.44552 * 24 20 19 48 48 H 1.08992 * 109.47471 * 54.51974 * 25 16 15 49 49 H 1.09005 * 109.46801 * 294.53246 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3449 3.2578 -2.9127 8 14 3.7318 3.9298 -0.2530 9 1 5.1052 3.5091 0.1241 10 1 3.7468 5.3564 -0.6650 11 1 2.8252 3.7602 0.9108 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6450 -4.9075 0.0011 17 6 0.9003 -5.0846 1.2542 18 6 0.2712 -6.4794 1.2841 19 6 -0.6718 -6.6339 0.0872 20 6 0.1120 -6.3884 -1.2035 21 6 -0.8417 -6.4818 -2.4122 22 6 0.0522 -6.5660 -3.6777 23 16 1.3776 -7.7188 -3.1483 24 6 1.2126 -7.4586 -1.3432 25 6 0.7550 -5.0018 -1.1634 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 3.8211 4.0840 -3.0900 32 1 0.7591 -2.5303 -0.8896 33 1 0.7584 -2.5299 0.8903 34 1 3.0063 -3.5775 0.8905 35 1 3.0063 -3.5776 -0.8894 36 1 0.1156 -4.3308 1.3197 37 1 1.5801 -4.9747 2.0991 38 1 -0.2914 -6.6050 2.2093 39 1 1.0554 -7.2343 1.2296 40 1 -1.4815 -5.9084 0.1653 41 1 -1.0858 -7.6421 0.0760 42 1 -1.4749 -5.5960 -2.4619 43 1 -1.4584 -7.3769 -2.3318 44 1 0.4649 -5.5885 -3.9271 45 1 -0.5053 -6.9762 -4.5198 46 1 0.9085 -8.3830 -0.8522 47 1 2.1511 -7.0955 -0.9242 48 1 1.3309 -4.8421 -2.0749 49 1 -0.0235 -4.2426 -1.0881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451984696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:24 Heat of formation + Delta-G solvation = -59.247027 kcal Electronic energy + Delta-G solvation = -26709.636490 eV Core-core repulsion = 23182.395577 eV Total energy + Delta-G solvation = -3527.240913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27293 -40.40859 -37.08256 -36.57048 -34.74233 -34.05788 -31.61638 -30.66744 -29.95266 -28.07050 -27.41741 -26.39770 -25.02243 -24.34945 -22.83211 -21.65107 -20.22067 -19.27755 -19.17516 -18.08499 -17.55473 -17.16381 -16.91088 -16.40585 -16.32364 -16.11734 -15.84098 -15.29826 -15.01508 -14.73198 -14.69041 -14.36568 -14.16143 -13.87431 -13.71725 -13.65708 -13.49032 -13.31287 -13.27777 -13.08514 -13.01223 -12.75513 -12.73870 -12.46628 -12.43805 -12.06016 -11.99306 -11.82914 -11.76957 -11.60361 -11.29436 -11.16963 -10.85749 -10.73832 -10.67782 -9.42170 -9.26523 -8.65946 -8.36503 -6.42021 0.96779 1.30875 1.35408 1.43596 1.53005 1.76662 2.28793 2.30793 2.89126 2.98030 3.49936 3.60593 3.73489 3.81342 3.92436 3.99579 4.01923 4.14625 4.21188 4.28187 4.30537 4.34187 4.47440 4.55226 4.62374 4.63044 4.68532 4.72809 4.77126 4.80575 4.83584 4.87529 4.92732 4.94195 4.96565 4.99719 5.04779 5.11565 5.15734 5.19554 5.33836 5.43371 5.46712 5.58707 6.03371 6.18140 6.20777 6.59167 6.67293 7.18922 7.39791 8.80516 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.002788 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.716521 B =10038.994730 C =10666.095840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.223 3.777 4 C -0.538 4.538 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.945 5.945 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.497 3.503 13 O -0.595 6.595 14 C -0.154 4.154 15 C 0.082 3.918 16 N -0.533 5.533 17 C 0.045 3.955 18 C -0.114 4.114 19 C -0.100 4.100 20 C -0.056 4.056 21 C -0.111 4.111 22 C -0.061 4.061 23 S -0.373 6.373 24 C -0.035 4.035 25 C 0.059 3.941 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.018 0.982 31 H 0.269 0.731 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.058 0.942 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.959 -22.302 9.456 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.341 5.341 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.286 3.714 13 O -0.477 6.477 14 C -0.196 4.196 15 C -0.046 4.046 16 N -0.256 5.256 17 C -0.083 4.083 18 C -0.152 4.152 19 C -0.138 4.138 20 C -0.058 4.058 21 C -0.150 4.150 22 C -0.209 4.209 23 S -0.148 6.148 24 C -0.183 4.183 25 C -0.069 4.069 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.116 0.884 47 H 0.113 0.887 48 H 0.077 0.923 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.198 -23.253 8.683 28.595 hybrid contribution -0.222 2.301 0.259 2.326 sum -14.420 -20.952 8.942 26.961 Atomic orbital electron populations 1.21950 0.77623 1.03855 1.02923 1.48018 1.08470 1.06050 1.71535 1.19325 0.92744 0.82702 0.95222 1.21568 1.36937 1.06735 0.92425 0.95494 1.25885 0.95258 0.98996 0.98697 1.70052 1.42676 1.24485 1.21327 0.85690 0.79550 0.77733 0.79813 1.20253 1.19921 1.15989 1.21322 0.87831 0.86597 0.75633 1.90644 1.16578 1.88162 1.52268 1.22284 1.00465 0.91232 1.05572 1.21744 0.94921 0.85270 1.02705 1.62170 1.28733 1.31373 1.03304 1.22274 0.96801 0.97962 0.91228 1.21617 0.98813 0.95884 0.98857 1.21608 0.97373 1.03220 0.91628 1.21445 0.93740 0.93367 0.97241 1.22700 0.97301 1.05054 0.89941 1.24307 0.95349 0.99487 1.01773 1.87863 1.54064 1.61116 1.11723 1.24095 1.02696 1.01469 0.90005 1.22192 0.95113 0.96181 0.93392 0.90125 0.91693 0.89447 0.93179 0.96437 0.92232 0.87896 0.86301 0.90809 0.92668 0.93497 0.90792 0.89458 0.91610 0.90382 0.89994 0.88084 0.88748 0.89851 0.86931 0.88402 0.88672 0.92324 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.11 10.24 127.77 1.31 3.42 16 2 N -0.61 -24.21 2.86 -851.13 -2.43 -26.64 16 3 C 0.22 10.85 4.23 85.64 0.36 11.21 16 4 C -0.54 -31.92 9.94 25.60 0.25 -31.67 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 6 C 0.01 0.57 5.47 84.65 0.46 1.04 16 7 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 8 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 12 C 0.50 19.59 7.67 87.65 0.67 20.26 16 13 O -0.60 -29.76 15.56 -3.02 -0.05 -29.80 16 14 C -0.15 -3.91 3.55 29.85 0.11 -3.81 16 15 C 0.08 2.17 4.65 86.30 0.40 2.57 16 16 N -0.53 -10.40 3.93 -896.56 -3.53 -13.93 16 17 C 0.04 0.64 5.04 86.33 0.43 1.08 16 18 C -0.11 -1.17 5.85 30.66 0.18 -0.99 16 19 C -0.10 -0.89 4.66 30.64 0.14 -0.74 16 20 C -0.06 -0.73 0.54 -51.41 -0.03 -0.76 16 21 C -0.11 -1.21 5.27 31.76 0.17 -1.04 16 22 C -0.06 -0.95 6.87 72.72 0.50 -0.45 16 23 S -0.37 -8.05 23.26 -56.49 -1.31 -9.37 16 24 C -0.03 -0.59 5.11 72.37 0.37 -0.22 16 25 C 0.06 1.03 3.39 86.27 0.29 1.32 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.90 8.07 -2.39 -0.02 1.89 16 28 H 0.09 1.81 6.44 -2.39 -0.02 1.80 16 29 H 0.05 2.22 7.13 -2.39 -0.02 2.21 16 30 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 31 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 32 H 0.10 2.35 5.76 -2.39 -0.01 2.33 16 33 H 0.12 2.25 6.65 -2.39 -0.02 2.23 16 34 H 0.07 2.09 8.02 -2.38 -0.02 2.07 16 35 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.05 0.59 6.76 -2.39 -0.02 0.58 16 37 H 0.07 1.13 8.06 -2.39 -0.02 1.11 16 38 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.07 0.79 7.36 -2.39 -0.02 0.78 16 40 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 42 H 0.10 0.84 8.11 -2.39 -0.02 0.82 16 43 H 0.09 0.83 8.11 -2.39 -0.02 0.81 16 44 H 0.08 1.42 7.53 -2.39 -0.02 1.40 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.10 1.42 7.84 -2.39 -0.02 1.40 16 47 H 0.09 1.99 7.15 -2.39 -0.02 1.98 16 48 H 0.06 1.30 7.14 -2.39 -0.02 1.28 16 49 H 0.05 0.81 6.59 -2.38 -0.02 0.80 16 Total: -1.00 -78.81 378.94 1.35 -77.46 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.86 Total: 14.48 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.63 Total: 1.21 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.66 Total: -100.49 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.31 Total: -9.37 kcal Total: -78.81 1.35 -77.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451984696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.217 kcal (2) G-P(sol) polarization free energy of solvation -78.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds