Wall clock time and date at job start Tue Mar 31 2020 14:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00232 * 2 1 4 4 H 1.48503 * 109.47121 * 270.00264 * 3 2 1 5 5 H 1.48500 * 109.47063 * 29.99869 * 3 2 1 6 6 H 1.48500 * 109.47119 * 150.00081 * 3 2 1 7 7 C 1.37882 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00332 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99489 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46743 * 180.02562 * 9 7 2 11 11 C 1.53113 * 109.52319 * 174.99901 * 10 9 7 12 12 C 1.53036 * 109.27835 * 177.55892 * 11 10 9 13 13 N 1.46853 * 109.52452 * 300.82202 * 12 11 10 14 14 C 1.46901 * 111.00145 * 185.84036 * 13 12 11 15 15 C 1.50704 * 109.47156 * 169.99630 * 14 13 12 16 16 N 1.29664 * 118.31444 * 274.97742 * 15 14 13 17 17 C 1.35885 * 122.15853 * 179.97438 * 16 15 14 18 18 C 1.39581 * 121.41989 * 180.02562 * 17 16 15 19 19 C 1.37769 * 119.72139 * 180.02562 * 18 17 16 20 20 C 1.38755 * 120.77286 * 359.97438 * 19 18 17 21 21 C 1.37940 * 120.49079 * 359.97438 * 20 19 18 22 22 C 1.39054 * 119.54310 * 0.02562 * 21 20 19 23 23 C 1.47624 * 121.84368 * 179.97438 * 22 21 20 24 24 N 1.30713 * 121.44421 * 0.02562 * 23 22 21 25 25 N 1.36056 * 118.30666 * 94.99962 * 15 14 13 26 26 H 0.96992 * 119.95866 * 0.02562 * 25 15 14 27 27 C 1.46843 * 111.19696 * 61.74060 * 13 12 11 28 28 C 1.53038 * 109.52466 * 298.25837 * 27 13 12 29 29 H 0.97002 * 119.99600 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47382 * 60.00516 * 9 7 2 31 31 H 1.09003 * 109.47032 * 299.99674 * 9 7 2 32 32 H 1.08999 * 109.52241 * 54.87188 * 10 9 7 33 33 H 1.08998 * 109.50393 * 57.61801 * 11 10 9 34 34 H 1.08999 * 109.53824 * 297.51619 * 11 10 9 35 35 H 1.09005 * 109.46389 * 180.80961 * 12 11 10 36 36 H 1.08993 * 109.45696 * 60.82927 * 12 11 10 37 37 H 1.09002 * 109.46694 * 49.99835 * 14 13 12 38 38 H 1.09002 * 109.47126 * 289.99921 * 14 13 12 39 39 H 1.07992 * 120.13865 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.61394 * 179.97438 * 19 18 17 41 41 H 1.08002 * 119.75384 * 179.72877 * 20 19 18 42 42 H 1.07999 * 120.22736 * 179.97438 * 21 20 19 43 43 H 0.97003 * 120.00108 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.46445 * 58.27570 * 27 13 12 45 45 H 1.09001 * 109.46184 * 178.24606 * 27 13 12 46 46 H 1.08996 * 109.50418 * 299.23894 * 28 27 13 47 47 H 1.08999 * 109.53702 * 179.14073 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5474 -2.6398 -0.1287 12 6 6.0564 -4.0817 -0.0680 13 7 5.6515 -4.6920 1.2048 14 6 6.2396 -6.0294 1.3582 15 6 6.0096 -6.5212 2.7640 16 7 6.8515 -6.1680 3.6846 17 6 6.7189 -6.5658 4.9772 18 6 7.6343 -6.1759 5.9561 19 6 7.4665 -6.6001 7.2560 20 6 6.3964 -7.4115 7.6054 21 6 5.4791 -7.8081 6.6546 22 6 5.6324 -7.3896 5.3374 23 6 4.6816 -7.7841 4.2792 24 7 3.6514 -8.5460 4.5376 25 7 4.9293 -7.3134 3.0016 26 1 4.3312 -7.5478 2.2749 27 6 4.1891 -4.7430 1.3277 28 6 3.6243 -3.3208 1.3087 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.5852 -3.1765 -0.8427 33 1 5.9815 -2.0659 0.6900 34 1 5.8353 -2.1920 -1.0798 35 1 7.1438 -4.0865 -0.1433 36 1 5.6326 -4.6514 -0.8949 37 1 7.3106 -5.9800 1.1612 38 1 5.7716 -6.7153 0.6520 39 1 8.4711 -5.5449 5.6954 40 1 8.1760 -6.2977 8.0120 41 1 6.2831 -7.7381 8.6286 42 1 4.6481 -8.4400 6.9312 43 1 3.0396 -8.7921 3.8262 44 1 3.7741 -5.3097 0.4942 45 1 3.9202 -5.2280 2.2661 46 1 4.0282 -2.7576 2.1500 47 1 2.5376 -3.3591 1.3846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515379564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:41 Heat of formation + Delta-G solvation = 63.250587 kcal Electronic energy + Delta-G solvation = -27218.492586 eV Core-core repulsion = 23593.412368 eV Total energy + Delta-G solvation = -3625.080218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26403 -39.10860 -37.96284 -35.88916 -34.65410 -32.84382 -32.18744 -31.04871 -30.55797 -30.12581 -28.76536 -26.55026 -24.55224 -23.72769 -23.00516 -22.27180 -21.50049 -20.55745 -19.44081 -19.14082 -18.72846 -17.70929 -16.78503 -16.20363 -15.96432 -15.19316 -15.08683 -14.82582 -14.77332 -14.32937 -14.24339 -13.76144 -13.72537 -13.39414 -13.11284 -12.78372 -12.66714 -12.44901 -12.14208 -11.96281 -11.94927 -11.76845 -11.69249 -11.41573 -10.96000 -10.83001 -10.60765 -10.41734 -10.25489 -10.02175 -9.83139 -9.74727 -9.65480 -9.34559 -9.06592 -9.03866 -8.53013 -8.38475 -7.90174 -6.04021 -4.01238 0.42879 0.73296 2.05314 2.48348 2.59352 3.30940 3.38963 3.43208 3.61369 3.78701 3.92121 4.02911 4.44156 4.46066 4.72521 4.75962 4.86201 4.95315 5.09253 5.12057 5.16122 5.27074 5.30132 5.35752 5.45319 5.51123 5.52911 5.66357 5.75480 5.76688 5.92228 5.94476 6.04040 6.04916 6.22275 6.22779 6.23900 6.37330 6.47813 6.59945 6.77635 6.78748 6.87174 6.96167 7.01351 7.12095 7.27134 7.47727 7.77447 7.80935 7.92321 8.54117 9.00448 9.59289 11.09370 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.002726 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.075615 B =10268.624122 C =10523.407005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.115 4.115 12 C 0.063 3.937 13 N -0.524 5.524 14 C 0.100 3.900 15 C 0.416 3.584 16 N -0.516 5.516 17 C 0.150 3.850 18 C -0.110 4.110 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.045 4.045 22 C -0.123 4.123 23 C 0.440 3.560 24 N -0.732 5.732 25 N -0.680 5.680 26 H 0.411 0.589 27 C 0.049 3.951 28 C -0.099 4.099 29 H 0.262 0.738 30 H 0.017 0.983 31 H 0.010 0.990 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.339 0.661 44 H 0.033 0.967 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.476 -17.273 8.149 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.153 4.153 12 C -0.064 4.064 13 N -0.250 5.250 14 C -0.030 4.030 15 C 0.144 3.856 16 N -0.237 5.237 17 C 0.041 3.959 18 C -0.129 4.129 19 C -0.102 4.102 20 C -0.163 4.163 21 C -0.065 4.065 22 C -0.129 4.129 23 C 0.164 3.836 24 N -0.362 5.362 25 N -0.314 5.314 26 H 0.249 0.751 27 C -0.079 4.079 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.051 0.949 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.897 -16.822 9.493 25.663 hybrid contribution -1.192 0.024 -1.795 2.155 sum 15.706 -16.798 7.698 24.251 Atomic orbital electron populations 1.69915 1.06310 1.26818 1.51422 1.25037 0.94702 0.99169 0.94679 0.86798 0.80459 0.83734 0.78421 1.20410 1.21495 1.18937 1.21138 0.89516 0.94243 1.50432 0.91065 1.19605 0.97068 0.91703 0.96227 1.21054 0.92523 0.98949 0.96594 1.21736 0.97480 0.94275 1.01793 1.22123 0.99906 0.96353 0.88062 1.61897 1.10114 1.17367 1.35624 1.21132 1.03137 0.91194 0.87545 1.22626 0.81838 0.84598 0.96491 1.68395 1.28409 1.26981 0.99884 1.18701 0.92907 0.93444 0.90800 1.20811 0.99346 1.01328 0.91447 1.21233 0.97266 0.95833 0.95890 1.21175 0.95455 1.00032 0.99681 1.21008 0.98205 0.96676 0.90611 1.19030 0.96087 1.04226 0.93515 1.21124 0.91750 0.88706 0.82010 1.70154 1.07052 1.20850 1.38170 1.44691 1.27353 1.48213 1.11095 0.75124 1.22351 0.86050 0.99923 0.99537 1.21528 1.01080 0.92367 0.98697 0.92822 0.96510 0.97127 0.92362 0.91341 0.91740 0.90840 0.94826 0.86829 0.92829 0.84502 0.85202 0.85319 0.84389 0.84416 0.94914 0.92053 0.91774 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.30 9.00 -34.44 -0.31 -14.61 16 8 H 0.07 2.11 7.33 -52.49 -0.38 1.73 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 10 C -0.07 -1.35 2.20 -90.50 -0.20 -1.55 16 11 C -0.12 -1.74 5.38 -26.65 -0.14 -1.88 16 12 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 13 N -0.52 -6.57 4.65 -236.11 -1.10 -7.67 16 14 C 0.10 0.97 5.29 -4.97 -0.03 0.94 16 15 C 0.42 4.70 6.32 -155.17 -0.98 3.72 16 16 N -0.52 -6.73 10.20 -8.20 -0.08 -6.81 16 17 C 0.15 1.92 6.63 -84.51 -0.56 1.36 16 18 C -0.11 -1.16 10.03 -39.25 -0.39 -1.56 16 19 C -0.08 -0.71 10.00 -39.56 -0.40 -1.11 16 20 C -0.14 -1.27 10.03 -39.50 -0.40 -1.67 16 21 C -0.04 -0.48 9.66 -39.39 -0.38 -0.86 16 22 C -0.12 -1.55 5.90 -104.71 -0.62 -2.16 16 23 C 0.44 5.33 8.05 -153.54 -1.24 4.09 16 24 N -0.73 -8.77 13.51 32.61 0.44 -8.33 16 25 N -0.68 -6.98 4.52 -7.88 -0.04 -7.01 16 26 H 0.41 3.23 8.66 -40.82 -0.35 2.88 16 27 C 0.05 0.68 5.29 -3.84 -0.02 0.66 16 28 C -0.10 -1.77 5.15 -26.65 -0.14 -1.91 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.75 8.02 -51.93 -0.42 0.34 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.11 0.98 7.99 -51.93 -0.41 0.57 16 38 H 0.05 0.40 8.02 -51.93 -0.42 -0.02 16 39 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 1.42 7.76 -52.49 -0.41 1.02 16 43 H 0.34 3.43 8.89 -40.82 -0.36 3.07 16 44 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.84 6.41 -51.93 -0.33 0.51 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.58 7.05 -51.93 -0.37 1.22 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -32.70 374.64 -12.23 -44.93 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.19 Total: 3.53 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -6.01 Total: -14.32 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.00 Total: -56.86 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.70 -12.23 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515379564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.183 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds