Wall clock time and date at job start Tue Mar 31 2020 14:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00232 * 2 1 4 4 H 1.48503 * 109.47121 * 270.00264 * 3 2 1 5 5 H 1.48500 * 109.47063 * 29.99869 * 3 2 1 6 6 H 1.48500 * 109.47119 * 150.00081 * 3 2 1 7 7 C 1.37882 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00332 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99489 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46743 * 180.02562 * 9 7 2 11 11 C 1.53113 * 109.52319 * 174.99901 * 10 9 7 12 12 C 1.53036 * 109.27835 * 177.55892 * 11 10 9 13 13 N 1.46853 * 109.52452 * 300.82202 * 12 11 10 14 14 C 1.46901 * 111.00145 * 185.84036 * 13 12 11 15 15 C 1.50704 * 109.47156 * 169.99630 * 14 13 12 16 16 N 1.29664 * 118.31444 * 274.97742 * 15 14 13 17 17 C 1.35885 * 122.15853 * 179.97438 * 16 15 14 18 18 C 1.39581 * 121.41989 * 180.02562 * 17 16 15 19 19 C 1.37769 * 119.72139 * 180.02562 * 18 17 16 20 20 C 1.38755 * 120.77286 * 359.97438 * 19 18 17 21 21 C 1.37940 * 120.49079 * 359.97438 * 20 19 18 22 22 C 1.39054 * 119.54310 * 0.02562 * 21 20 19 23 23 C 1.47624 * 121.84368 * 179.97438 * 22 21 20 24 24 N 1.30713 * 121.44421 * 0.02562 * 23 22 21 25 25 N 1.36056 * 118.30666 * 94.99962 * 15 14 13 26 26 H 0.96992 * 119.95866 * 0.02562 * 25 15 14 27 27 C 1.46843 * 111.19696 * 61.74060 * 13 12 11 28 28 C 1.53038 * 109.52466 * 298.25837 * 27 13 12 29 29 H 0.97002 * 119.99600 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47382 * 60.00516 * 9 7 2 31 31 H 1.09003 * 109.47032 * 299.99674 * 9 7 2 32 32 H 1.08999 * 109.52241 * 54.87188 * 10 9 7 33 33 H 1.08998 * 109.50393 * 57.61801 * 11 10 9 34 34 H 1.08999 * 109.53824 * 297.51619 * 11 10 9 35 35 H 1.09005 * 109.46389 * 180.80961 * 12 11 10 36 36 H 1.08993 * 109.45696 * 60.82927 * 12 11 10 37 37 H 1.09002 * 109.46694 * 49.99835 * 14 13 12 38 38 H 1.09002 * 109.47126 * 289.99921 * 14 13 12 39 39 H 1.07992 * 120.13865 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.61394 * 179.97438 * 19 18 17 41 41 H 1.08002 * 119.75384 * 179.72877 * 20 19 18 42 42 H 1.07999 * 120.22736 * 179.97438 * 21 20 19 43 43 H 0.97003 * 120.00108 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.46445 * 58.27570 * 27 13 12 45 45 H 1.09001 * 109.46184 * 178.24606 * 27 13 12 46 46 H 1.08996 * 109.50418 * 299.23894 * 28 27 13 47 47 H 1.08999 * 109.53702 * 179.14073 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5474 -2.6398 -0.1287 12 6 6.0564 -4.0817 -0.0680 13 7 5.6515 -4.6920 1.2048 14 6 6.2396 -6.0294 1.3582 15 6 6.0096 -6.5212 2.7640 16 7 6.8515 -6.1680 3.6846 17 6 6.7189 -6.5658 4.9772 18 6 7.6343 -6.1759 5.9561 19 6 7.4665 -6.6001 7.2560 20 6 6.3964 -7.4115 7.6054 21 6 5.4791 -7.8081 6.6546 22 6 5.6324 -7.3896 5.3374 23 6 4.6816 -7.7841 4.2792 24 7 3.6514 -8.5460 4.5376 25 7 4.9293 -7.3134 3.0016 26 1 4.3312 -7.5478 2.2749 27 6 4.1891 -4.7430 1.3277 28 6 3.6243 -3.3208 1.3087 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.5852 -3.1765 -0.8427 33 1 5.9815 -2.0659 0.6900 34 1 5.8353 -2.1920 -1.0798 35 1 7.1438 -4.0865 -0.1433 36 1 5.6326 -4.6514 -0.8949 37 1 7.3106 -5.9800 1.1612 38 1 5.7716 -6.7153 0.6520 39 1 8.4711 -5.5449 5.6954 40 1 8.1760 -6.2977 8.0120 41 1 6.2831 -7.7381 8.6286 42 1 4.6481 -8.4400 6.9312 43 1 3.0396 -8.7921 3.8262 44 1 3.7741 -5.3097 0.4942 45 1 3.9202 -5.2280 2.2661 46 1 4.0282 -2.7576 2.1500 47 1 2.5376 -3.3591 1.3846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515379564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:40 Heat of formation + Delta-G solvation = 42.515554 kcal Electronic energy + Delta-G solvation = -27219.391725 eV Core-core repulsion = 23593.412368 eV Total energy + Delta-G solvation = -3625.979356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08511 -40.17174 -38.82654 -36.85727 -35.99067 -34.39449 -33.46819 -31.84305 -31.72962 -31.24551 -30.07129 -27.76274 -25.35540 -25.19595 -24.19755 -23.23595 -22.45613 -21.95399 -20.52128 -20.21112 -19.57797 -18.88482 -18.54169 -17.23823 -16.70797 -16.37977 -16.13046 -15.89742 -15.76221 -15.63065 -15.21648 -15.11383 -14.77841 -14.62236 -14.49972 -14.13248 -13.68322 -13.56203 -13.47023 -13.22190 -13.01925 -12.79711 -12.66292 -12.49799 -12.44370 -12.26199 -12.08195 -11.94008 -11.68189 -11.29101 -11.23906 -11.02139 -10.83103 -10.78946 -10.71489 -10.66705 -9.85312 -9.31680 -8.73358 -8.27929 -6.29823 -0.37032 -0.06353 1.19600 1.34043 1.36721 1.48379 1.68801 1.81552 2.36439 2.79439 2.94953 3.07728 3.11508 3.16868 3.66265 3.90741 3.95652 3.97015 4.07726 4.08690 4.23374 4.26366 4.33868 4.41042 4.47662 4.56634 4.60166 4.70709 4.74333 4.75636 4.80451 4.93453 4.99013 5.02298 5.09415 5.18817 5.26191 5.29229 5.31993 5.36967 5.45693 5.50444 5.51607 5.70820 5.73433 5.87494 6.01499 6.04562 6.11277 6.32163 6.77670 6.94093 7.09155 7.34191 8.88751 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.002726 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.075615 B =10268.624122 C =10523.407005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.518 4.518 8 H 0.034 0.966 9 C -0.007 4.007 10 C -0.069 4.069 11 C -0.109 4.109 12 C 0.068 3.932 13 N -0.538 5.538 14 C 0.104 3.896 15 C 0.409 3.591 16 N -0.535 5.535 17 C 0.124 3.876 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.138 4.138 21 C -0.059 4.059 22 C -0.150 4.150 23 C 0.432 3.568 24 N -0.747 5.747 25 N -0.672 5.672 26 H 0.421 0.579 27 C 0.063 3.937 28 C -0.095 4.095 29 H 0.264 0.736 30 H 0.011 0.989 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.137 0.863 43 H 0.345 0.655 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.575 -17.635 8.307 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.556 4.556 8 H 0.053 0.947 9 C -0.044 4.044 10 C -0.088 4.088 11 C -0.147 4.147 12 C -0.059 4.059 13 N -0.264 5.264 14 C -0.025 4.025 15 C 0.137 3.863 16 N -0.257 5.257 17 C 0.015 3.985 18 C -0.141 4.141 19 C -0.094 4.094 20 C -0.156 4.156 21 C -0.079 4.079 22 C -0.155 4.155 23 C 0.156 3.844 24 N -0.379 5.379 25 N -0.307 5.307 26 H 0.261 0.739 27 C -0.065 4.065 28 C -0.133 4.133 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.163 0.837 40 H 0.182 0.818 41 H 0.176 0.824 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.013 -17.204 9.633 28.094 hybrid contribution -2.195 0.075 -1.759 2.814 sum 17.818 -17.129 7.874 25.940 Atomic orbital electron populations 1.70073 1.08244 1.27896 1.53363 1.26002 0.95558 1.03423 0.94574 0.85707 0.79455 0.78626 0.79164 1.19021 1.21370 1.17307 1.21483 0.92084 0.92831 1.49181 0.94747 1.19581 0.93849 0.95039 0.95980 1.20968 0.95495 0.95814 0.96508 1.21654 0.94006 0.96895 1.02153 1.22106 1.01548 0.94093 0.88140 1.61771 1.08719 1.19594 1.36328 1.21238 1.04162 0.90064 0.87008 1.22950 0.81751 0.84539 0.97014 1.68382 1.29320 1.27631 1.00336 1.19016 0.93768 0.94365 0.91319 1.21092 0.99324 1.01617 0.92050 1.21632 0.97415 0.94534 0.95797 1.21560 0.94517 0.98961 1.00612 1.21174 0.98957 0.97150 0.90639 1.19292 0.96638 1.05190 0.94404 1.21234 0.91736 0.88692 0.82716 1.70150 1.07471 1.21446 1.38819 1.44591 1.27350 1.47826 1.10905 0.73919 1.22079 0.87459 0.96801 1.00130 1.21379 0.98968 0.95184 0.97798 0.92740 0.97076 0.96429 0.92972 0.92223 0.90423 0.87956 0.93442 0.85135 0.89879 0.83725 0.81816 0.82351 0.84541 0.83733 0.93566 0.92141 0.93544 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 7 C -0.52 -29.70 9.00 25.60 0.23 -29.47 16 8 H 0.03 2.16 7.33 -2.91 -0.02 2.14 16 9 C -0.01 -0.33 3.52 29.85 0.11 -0.23 16 10 C -0.07 -2.56 2.20 -10.71 -0.02 -2.58 16 11 C -0.11 -3.05 5.38 30.64 0.16 -2.89 16 12 C 0.07 1.40 5.46 86.32 0.47 1.87 16 13 N -0.54 -12.18 4.65 -900.91 -4.19 -16.37 16 14 C 0.10 1.71 5.29 85.56 0.45 2.16 16 15 C 0.41 8.68 6.32 138.04 0.87 9.55 16 16 N -0.54 -13.47 10.20 -179.85 -1.83 -15.31 16 17 C 0.12 3.10 6.63 39.53 0.26 3.37 16 18 C -0.12 -2.42 10.03 22.48 0.23 -2.20 16 19 C -0.07 -1.10 10.00 22.28 0.22 -0.88 16 20 C -0.14 -2.15 10.03 22.32 0.22 -1.92 16 21 C -0.06 -1.24 9.66 22.40 0.22 -1.03 16 22 C -0.15 -3.75 5.90 -19.92 -0.12 -3.87 16 23 C 0.43 10.47 8.05 136.03 1.09 11.56 16 24 N -0.75 -18.05 13.51 -50.74 -0.69 -18.74 16 25 N -0.67 -13.30 4.52 -178.85 -0.81 -14.11 16 26 H 0.42 6.16 8.66 -92.71 -0.80 5.36 16 27 C 0.06 1.70 5.29 86.33 0.46 2.15 16 28 C -0.10 -3.50 5.15 30.65 0.16 -3.34 16 29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 31 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.10 1.61 8.02 -2.38 -0.02 1.59 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 1.76 7.99 -2.39 -0.02 1.74 16 38 H 0.08 0.91 8.02 -2.39 -0.02 0.89 16 39 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.14 2.82 7.76 -2.91 -0.02 2.79 16 43 H 0.35 7.04 8.89 -92.71 -0.82 6.22 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.63 6.41 -2.39 -0.02 1.62 16 46 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.84 7.05 -2.39 -0.02 1.82 16 Total: -1.00 -74.28 374.64 -0.54 -74.82 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.69 Total: 20.34 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 5.48 Total: -17.24 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -7.21 Total: -124.83 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -74.28 -0.54 -74.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515379564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.332 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds