Wall clock time and date at job start Tue Mar 31 2020 14:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00129 * 2 1 4 4 C 1.50701 * 109.47157 * 66.04298 * 3 2 1 5 5 O 1.21277 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99457 * 180.02562 * 4 3 2 7 7 C 1.46929 * 120.62760 * 180.02562 * 6 4 3 8 8 C 1.53195 * 108.77400 * 233.58752 * 7 6 4 9 9 C 1.53041 * 109.30941 * 305.36071 * 8 7 6 10 10 C 1.53003 * 109.45725 * 181.38849 * 9 8 7 11 11 C 1.50700 * 109.46922 * 175.00176 * 10 9 8 12 12 H 1.07995 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99946 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47429 * 270.00455 * 15 13 11 17 17 H 1.48509 * 109.47231 * 30.00405 * 15 13 11 18 18 H 1.48506 * 109.47253 * 150.00027 * 15 13 11 19 19 C 1.53042 * 109.53653 * 61.36920 * 9 8 7 20 20 C 1.46928 * 120.63340 * 359.97436 * 6 4 3 21 21 C 1.46897 * 111.00142 * 236.04132 * 2 1 3 22 22 H 1.08994 * 108.83164 * 67.63623 * 21 2 1 23 23 C 1.52336 * 108.86640 * 186.16856 * 21 2 1 24 24 C 1.54260 * 112.58613 * 120.81974 * 23 21 2 25 25 S 1.83959 * 102.58221 * 24.52952 * 24 23 21 26 26 C 1.54266 * 108.86825 * 309.10631 * 21 2 1 27 27 H 1.08998 * 109.47034 * 55.78144 * 1 2 3 28 28 H 1.09001 * 109.47714 * 175.78215 * 1 2 3 29 29 H 1.09000 * 109.47442 * 295.78353 * 1 2 3 30 30 H 1.08994 * 109.46646 * 306.04280 * 3 2 1 31 31 H 1.09000 * 109.46762 * 186.04323 * 3 2 1 32 32 H 1.09003 * 109.58943 * 113.79695 * 7 6 4 33 33 H 1.09003 * 109.70409 * 353.43799 * 7 6 4 34 34 H 1.09002 * 109.49622 * 185.41162 * 8 7 6 35 35 H 1.08996 * 109.50309 * 65.31477 * 8 7 6 36 36 H 1.08998 * 109.46459 * 301.35930 * 9 8 7 37 37 H 1.09000 * 109.47312 * 55.00307 * 10 9 8 38 38 H 1.09002 * 109.46925 * 295.00220 * 10 9 8 39 39 H 0.97008 * 119.99774 * 359.97438 * 14 13 11 40 40 H 1.08998 * 109.49484 * 58.58323 * 19 9 8 41 41 H 1.09004 * 109.49681 * 178.68084 * 19 9 8 42 42 H 1.09003 * 109.58450 * 246.19991 * 20 6 4 43 43 H 1.08991 * 109.58635 * 6.62951 * 20 6 4 44 44 H 1.09001 * 108.86592 * 241.63560 * 23 21 2 45 45 H 1.08994 * 108.87228 * 0.02562 * 23 21 2 46 46 H 1.09003 * 110.78402 * 142.79920 * 24 23 21 47 47 H 1.09001 * 110.79017 * 266.05887 * 24 23 21 48 48 H 1.09002 * 110.78675 * 332.92171 * 26 21 2 49 49 H 1.08998 * 110.78526 * 96.38061 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0046 1.4457 2.1406 6 7 2.0180 3.3202 1.5231 7 6 1.6764 3.9923 2.7843 8 6 0.9670 5.3116 2.4634 9 6 1.8450 6.1434 1.5257 10 6 1.1551 7.4768 1.2306 11 6 2.0717 8.3454 0.4082 12 1 3.0484 7.9826 0.1240 13 6 1.6629 9.6030 0.0176 14 7 0.4734 10.0447 0.3632 15 14 2.7993 10.6800 -1.0012 16 1 3.6408 11.5053 -0.0979 17 1 3.6713 9.8220 -1.8432 18 1 1.9894 11.5688 -1.8727 19 6 2.0616 5.3807 0.2167 20 6 2.7839 4.0620 0.5122 21 6 1.9954 -0.7661 -1.1375 22 1 1.7551 -0.2368 -2.0595 23 6 3.5099 -0.8645 -1.0064 24 6 4.0047 -2.3238 -0.9338 25 16 2.6557 -3.2468 -1.7777 26 6 1.3146 -2.1501 -1.1648 27 1 -0.3633 0.5779 -0.8498 28 1 -0.3634 -1.0248 -0.0756 29 1 -0.3634 0.4470 0.9253 30 1 1.5611 1.9272 -0.8309 31 1 3.0797 1.3443 -0.1082 32 1 2.5867 4.1947 3.3487 33 1 1.0155 3.3558 3.3727 34 1 0.7938 5.8654 3.3862 35 1 0.0129 5.1034 1.9792 36 1 2.8082 6.3302 2.0005 37 1 0.9219 7.9807 2.1686 38 1 0.2338 7.2945 0.6772 39 1 -0.1166 9.4855 0.8926 40 1 1.0972 5.1717 -0.2464 41 1 2.6675 5.9836 -0.4597 42 1 3.7843 4.2701 0.8918 43 1 2.8528 3.4704 -0.4006 44 1 3.9705 -0.3785 -1.8665 45 1 3.8201 -0.3421 -0.1015 46 1 4.9468 -2.4399 -1.4696 47 1 4.1086 -2.6460 0.1024 48 1 0.9994 -2.4460 -0.1641 49 1 0.4702 -2.1523 -1.8540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516573288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:57 Heat of formation + Delta-G solvation = -38.479148 kcal Electronic energy + Delta-G solvation = -26333.595549 eV Core-core repulsion = 22807.255199 eV Total energy + Delta-G solvation = -3526.340350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40375 -38.72814 -37.27356 -34.28958 -33.88340 -32.36351 -31.13536 -30.16295 -28.32511 -27.56600 -26.15510 -24.23288 -23.51969 -22.93724 -21.92617 -20.34488 -19.82036 -18.74563 -17.67773 -16.86907 -16.78273 -16.70493 -15.99401 -15.53116 -14.89106 -14.74553 -14.36863 -14.00482 -13.89691 -13.78087 -13.72899 -13.50100 -13.34333 -13.14332 -12.89946 -12.62195 -12.35573 -12.16961 -12.03164 -11.75385 -11.71900 -11.57279 -11.35535 -11.32152 -11.23855 -10.95553 -10.72375 -10.34626 -10.20567 -10.09366 -9.89565 -9.72360 -9.58240 -8.69822 -8.59546 -8.39000 -8.36539 -8.09695 -6.39422 -4.08881 1.48435 1.88020 2.62362 2.88144 3.39155 3.41897 3.57407 3.59284 3.99812 4.38449 4.44354 4.48275 4.49935 4.67328 4.75885 4.88510 4.96348 5.03344 5.06494 5.20319 5.22669 5.26946 5.30427 5.32426 5.34135 5.37926 5.40323 5.49901 5.53182 5.54785 5.60997 5.85130 5.88675 5.96771 6.21673 6.22601 6.34683 6.47539 6.60308 6.67705 6.77175 6.81537 6.90308 7.33513 7.45675 7.50058 8.16938 8.21859 8.42065 8.84598 9.63351 11.00829 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002381 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.119487 B =11755.062384 C =12457.389401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.518 5.518 3 C 0.032 3.968 4 C 0.516 3.484 5 O -0.532 6.532 6 N -0.607 5.607 7 C 0.114 3.886 8 C -0.130 4.130 9 C -0.073 4.073 10 C 0.014 3.986 11 C -0.598 4.598 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.914 5.914 15 Si 1.069 2.931 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.285 1.285 19 C -0.118 4.118 20 C 0.104 3.896 21 C 0.082 3.918 22 H 0.056 0.944 23 C -0.127 4.127 24 C -0.059 4.059 25 S -0.299 6.299 26 C -0.059 4.059 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.007 0.993 38 H 0.006 0.994 39 H 0.269 0.731 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -22.680 -2.721 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.243 5.243 3 C -0.099 4.099 4 C 0.303 3.697 5 O -0.409 6.409 6 N -0.341 5.341 7 C -0.008 4.008 8 C -0.169 4.169 9 C -0.092 4.092 10 C -0.023 4.023 11 C -0.636 4.636 12 H 0.068 0.932 13 C -0.191 4.191 14 N -0.550 5.550 15 Si 0.898 3.102 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.211 1.211 19 C -0.156 4.156 20 C -0.019 4.019 21 C -0.028 4.028 22 H 0.074 0.926 23 C -0.166 4.166 24 C -0.207 4.207 25 S -0.073 6.073 26 C -0.208 4.208 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.343 -22.763 -3.308 23.614 hybrid contribution -0.353 0.076 0.638 0.733 sum 4.989 -22.687 -2.670 23.382 Atomic orbital electron populations 1.22675 0.86120 1.02156 1.02638 1.61941 1.09101 1.11792 1.41512 1.22120 1.02217 0.89564 0.96002 1.20318 0.79483 0.81228 0.88640 1.90636 1.39814 1.63815 1.46641 1.48175 1.55115 1.12102 1.18711 1.21626 1.00013 0.94105 0.85029 1.22044 0.99323 0.94841 1.00649 1.21049 0.98543 0.96019 0.93592 1.19254 0.95806 0.91080 0.96152 1.22047 1.02810 1.02334 1.36402 0.93203 1.25824 0.98508 0.96905 0.97821 1.70752 1.08162 1.40069 1.36054 0.83543 0.74883 0.75634 0.76185 1.21510 1.21513 1.21069 1.21895 1.00631 0.93787 0.99312 1.21950 0.95166 0.94188 0.90603 1.22267 0.93942 0.93718 0.92833 0.92582 1.22129 0.94044 0.96246 1.04159 1.24089 0.98555 0.94979 1.03094 1.88026 1.05861 1.45054 1.68381 1.24285 0.98039 0.93474 1.04971 0.95763 0.91086 0.88826 0.91550 0.87712 0.91805 0.89584 0.91189 0.92209 0.92166 0.97523 0.97621 0.92077 0.92465 0.89540 0.91294 0.90688 0.90318 0.89224 0.87715 0.88919 0.87766 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.89 60.06 0.53 0.65 16 2 N -0.52 -5.21 4.23 -235.95 -1.00 -6.21 16 3 C 0.03 0.32 3.51 -4.97 -0.02 0.31 16 4 C 0.52 7.00 7.45 -10.99 -0.08 6.92 16 5 O -0.53 -8.80 13.72 5.56 0.08 -8.73 16 6 N -0.61 -8.20 2.97 -172.74 -0.51 -8.71 16 7 C 0.11 1.63 6.43 -3.71 -0.02 1.60 16 8 C -0.13 -2.11 5.36 -26.61 -0.14 -2.25 16 9 C -0.07 -1.37 2.10 -90.57 -0.19 -1.56 16 10 C 0.01 0.34 3.76 -27.88 -0.10 0.23 16 11 C -0.60 -16.00 8.39 -34.44 -0.29 -16.29 16 12 H 0.05 1.29 7.05 -52.49 -0.37 0.92 16 13 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 14 N -0.91 -27.47 13.65 55.43 0.76 -26.71 16 15 Si 1.07 24.54 29.90 -169.99 -5.08 19.45 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.12 -1.93 5.19 -26.59 -0.14 -2.06 16 20 C 0.10 1.28 6.34 -3.69 -0.02 1.26 16 21 C 0.08 0.67 2.46 -67.39 -0.17 0.50 16 22 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 23 C -0.13 -0.89 5.32 -26.41 -0.14 -1.03 16 24 C -0.06 -0.41 7.46 37.82 0.28 -0.13 16 25 S -0.30 -2.71 23.26 -107.50 -2.50 -5.21 16 26 C -0.06 -0.47 5.42 37.82 0.20 -0.27 16 27 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 28 H 0.07 0.61 6.08 -51.93 -0.32 0.29 16 29 H 0.09 1.20 5.96 -51.93 -0.31 0.89 16 30 H 0.07 0.63 7.63 -51.93 -0.40 0.24 16 31 H 0.10 0.87 5.97 -51.93 -0.31 0.56 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.27 7.01 -51.93 -0.36 0.90 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 38 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 39 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.52 6.91 -51.93 -0.36 1.17 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.73 5.93 -51.93 -0.31 0.43 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.67 6.38 -51.93 -0.33 0.34 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.89 7.31 -51.93 -0.38 0.51 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -31.46 379.71 -11.37 -42.83 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.44 Total: -0.59 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.39 Total: -11.84 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.75 Total: -41.63 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.50 Total: -5.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.46 -11.37 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516573288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.349 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds