Wall clock time and date at job start Tue Mar 31 2020 14:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00129 * 2 1 4 4 C 1.50701 * 109.47157 * 66.04298 * 3 2 1 5 5 O 1.21277 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99457 * 180.02562 * 4 3 2 7 7 C 1.46929 * 120.62760 * 180.02562 * 6 4 3 8 8 C 1.53195 * 108.77400 * 233.58752 * 7 6 4 9 9 C 1.53041 * 109.30941 * 305.36071 * 8 7 6 10 10 C 1.53003 * 109.45725 * 181.38849 * 9 8 7 11 11 C 1.50700 * 109.46922 * 175.00176 * 10 9 8 12 12 H 1.07995 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99946 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99975 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00065 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47429 * 270.00455 * 15 13 11 17 17 H 1.48509 * 109.47231 * 30.00405 * 15 13 11 18 18 H 1.48506 * 109.47253 * 150.00027 * 15 13 11 19 19 C 1.53042 * 109.53653 * 61.36920 * 9 8 7 20 20 C 1.46928 * 120.63340 * 359.97436 * 6 4 3 21 21 C 1.46897 * 111.00142 * 236.04132 * 2 1 3 22 22 H 1.08994 * 108.83164 * 67.63623 * 21 2 1 23 23 C 1.52336 * 108.86640 * 186.16856 * 21 2 1 24 24 C 1.54260 * 112.58613 * 120.81974 * 23 21 2 25 25 S 1.83959 * 102.58221 * 24.52952 * 24 23 21 26 26 C 1.54266 * 108.86825 * 309.10631 * 21 2 1 27 27 H 1.08998 * 109.47034 * 55.78144 * 1 2 3 28 28 H 1.09001 * 109.47714 * 175.78215 * 1 2 3 29 29 H 1.09000 * 109.47442 * 295.78353 * 1 2 3 30 30 H 1.08994 * 109.46646 * 306.04280 * 3 2 1 31 31 H 1.09000 * 109.46762 * 186.04323 * 3 2 1 32 32 H 1.09003 * 109.58943 * 113.79695 * 7 6 4 33 33 H 1.09003 * 109.70409 * 353.43799 * 7 6 4 34 34 H 1.09002 * 109.49622 * 185.41162 * 8 7 6 35 35 H 1.08996 * 109.50309 * 65.31477 * 8 7 6 36 36 H 1.08998 * 109.46459 * 301.35930 * 9 8 7 37 37 H 1.09000 * 109.47312 * 55.00307 * 10 9 8 38 38 H 1.09002 * 109.46925 * 295.00220 * 10 9 8 39 39 H 0.97008 * 119.99774 * 359.97438 * 14 13 11 40 40 H 1.08998 * 109.49484 * 58.58323 * 19 9 8 41 41 H 1.09004 * 109.49681 * 178.68084 * 19 9 8 42 42 H 1.09003 * 109.58450 * 246.19991 * 20 6 4 43 43 H 1.08991 * 109.58635 * 6.62951 * 20 6 4 44 44 H 1.09001 * 108.86592 * 241.63560 * 23 21 2 45 45 H 1.08994 * 108.87228 * 0.02562 * 23 21 2 46 46 H 1.09003 * 110.78402 * 142.79920 * 24 23 21 47 47 H 1.09001 * 110.79017 * 266.05887 * 24 23 21 48 48 H 1.09002 * 110.78675 * 332.92171 * 26 21 2 49 49 H 1.08998 * 110.78526 * 96.38061 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0046 1.4457 2.1406 6 7 2.0180 3.3202 1.5231 7 6 1.6764 3.9923 2.7843 8 6 0.9670 5.3116 2.4634 9 6 1.8450 6.1434 1.5257 10 6 1.1551 7.4768 1.2306 11 6 2.0717 8.3454 0.4082 12 1 3.0484 7.9826 0.1240 13 6 1.6629 9.6030 0.0176 14 7 0.4734 10.0447 0.3632 15 14 2.7993 10.6800 -1.0012 16 1 3.6408 11.5053 -0.0979 17 1 3.6713 9.8220 -1.8432 18 1 1.9894 11.5688 -1.8727 19 6 2.0616 5.3807 0.2167 20 6 2.7839 4.0620 0.5122 21 6 1.9954 -0.7661 -1.1375 22 1 1.7551 -0.2368 -2.0595 23 6 3.5099 -0.8645 -1.0064 24 6 4.0047 -2.3238 -0.9338 25 16 2.6557 -3.2468 -1.7777 26 6 1.3146 -2.1501 -1.1648 27 1 -0.3633 0.5779 -0.8498 28 1 -0.3634 -1.0248 -0.0756 29 1 -0.3634 0.4470 0.9253 30 1 1.5611 1.9272 -0.8309 31 1 3.0797 1.3443 -0.1082 32 1 2.5867 4.1947 3.3487 33 1 1.0155 3.3558 3.3727 34 1 0.7938 5.8654 3.3862 35 1 0.0129 5.1034 1.9792 36 1 2.8082 6.3302 2.0005 37 1 0.9219 7.9807 2.1686 38 1 0.2338 7.2945 0.6772 39 1 -0.1166 9.4855 0.8926 40 1 1.0972 5.1717 -0.2464 41 1 2.6675 5.9836 -0.4597 42 1 3.7843 4.2701 0.8918 43 1 2.8528 3.4704 -0.4006 44 1 3.9705 -0.3785 -1.8665 45 1 3.8201 -0.3421 -0.1015 46 1 4.9468 -2.4399 -1.4696 47 1 4.1086 -2.6460 0.1024 48 1 0.9994 -2.4460 -0.1641 49 1 0.4702 -2.1523 -1.8540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516573288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:56 Heat of formation + Delta-G solvation = -56.858886 kcal Electronic energy + Delta-G solvation = -26334.392554 eV Core-core repulsion = 22807.255199 eV Total energy + Delta-G solvation = -3527.137355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42988 -39.62118 -38.45395 -35.96209 -34.55814 -34.05934 -32.31229 -30.94414 -29.63934 -28.61535 -27.07145 -25.81563 -24.36305 -24.13008 -23.43358 -21.51706 -20.67009 -19.88646 -18.83016 -18.50536 -17.69301 -17.42784 -16.98164 -16.48391 -15.76428 -15.66724 -15.59028 -15.41447 -15.28119 -15.13644 -14.75144 -14.59857 -14.47014 -14.05491 -13.95292 -13.70017 -13.28254 -13.25098 -13.12830 -12.95502 -12.83931 -12.69328 -12.46488 -12.44116 -12.28798 -12.18437 -11.92482 -11.88570 -11.59923 -11.49934 -11.28510 -11.00908 -10.66876 -10.55064 -10.49809 -9.64144 -9.37598 -8.78043 -8.63519 -6.33516 0.87566 1.29126 1.54331 1.60263 1.63081 1.79434 1.91081 2.59456 2.82949 3.20531 3.41008 3.48147 3.83210 3.87280 3.92605 3.94495 4.00638 4.09048 4.14229 4.19780 4.21263 4.30061 4.34848 4.45514 4.48089 4.49259 4.58092 4.60376 4.68729 4.75032 4.79507 4.81247 4.85866 4.95692 4.98062 5.01688 5.10022 5.12231 5.18448 5.30391 5.36054 5.56053 5.65910 5.80428 5.97350 6.05763 6.24140 6.43977 6.62294 7.18407 7.48798 8.76700 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002381 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.119487 B =11755.062384 C =12457.389401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.529 5.529 3 C 0.036 3.964 4 C 0.512 3.488 5 O -0.567 6.567 6 N -0.610 5.610 7 C 0.122 3.878 8 C -0.122 4.122 9 C -0.067 4.067 10 C 0.016 3.984 11 C -0.600 4.600 12 H 0.061 0.939 13 C -0.046 4.046 14 N -0.946 5.946 15 Si 1.117 2.883 16 H -0.276 1.276 17 H -0.261 1.261 18 H -0.289 1.289 19 C -0.113 4.113 20 C 0.113 3.887 21 C 0.085 3.915 22 H 0.064 0.936 23 C -0.125 4.125 24 C -0.049 4.049 25 S -0.342 6.342 26 C -0.051 4.051 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.062 0.938 37 H -0.020 1.020 38 H -0.021 1.021 39 H 0.253 0.747 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -23.819 -4.086 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.094 4.094 4 C 0.301 3.699 5 O -0.445 6.445 6 N -0.343 5.343 7 C -0.001 4.001 8 C -0.160 4.160 9 C -0.086 4.086 10 C -0.021 4.021 11 C -0.638 4.638 12 H 0.079 0.921 13 C -0.242 4.242 14 N -0.584 5.584 15 Si 0.939 3.061 16 H -0.202 1.202 17 H -0.186 1.186 18 H -0.215 1.215 19 C -0.152 4.152 20 C -0.009 4.009 21 C -0.024 4.024 22 H 0.082 0.918 23 C -0.164 4.164 24 C -0.197 4.197 25 S -0.117 6.117 26 C -0.199 4.199 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.081 0.919 37 H -0.002 1.002 38 H -0.002 1.002 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.016 -23.931 -4.673 25.667 hybrid contribution -1.238 0.409 1.120 1.719 sum 6.778 -23.522 -3.553 24.735 Atomic orbital electron populations 1.22570 0.86650 1.02754 1.01245 1.61907 1.08809 1.11989 1.42778 1.22156 1.03838 0.89438 0.93994 1.20966 0.78492 0.80958 0.89448 1.90633 1.41206 1.64601 1.48108 1.48257 1.55195 1.12355 1.18523 1.21475 1.00298 0.92515 0.85811 1.21915 0.98434 0.95834 0.99836 1.20928 0.98169 0.93803 0.95689 1.19207 0.94980 0.93858 0.94099 1.22465 1.03323 1.02442 1.35549 0.92100 1.27410 0.99012 0.99151 0.98656 1.70899 1.09435 1.40299 1.37766 0.82938 0.73489 0.74489 0.75196 1.20173 1.18560 1.21548 1.21786 1.00383 0.95674 0.97326 1.21967 0.94817 0.92185 0.91916 1.22327 0.94634 0.93203 0.92276 0.91829 1.22137 0.93157 0.96177 1.04914 1.24160 0.98160 0.94433 1.02909 1.88197 1.07906 1.46580 1.68994 1.24250 0.97874 0.93143 1.04613 0.95237 0.89864 0.91753 0.90342 0.85068 0.90206 0.90190 0.91353 0.93707 0.91913 1.00206 1.00239 0.93804 0.93782 0.90639 0.89488 0.87168 0.88613 0.89177 0.86135 0.88990 0.88574 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.89 127.69 1.13 1.44 16 2 N -0.53 -9.41 4.23 -900.41 -3.81 -13.22 16 3 C 0.04 0.62 3.51 85.56 0.30 0.92 16 4 C 0.51 12.85 7.45 87.66 0.65 13.50 16 5 O -0.57 -18.32 13.72 -3.02 -0.04 -18.36 16 6 N -0.61 -15.08 2.97 -818.81 -2.43 -17.51 16 7 C 0.12 3.31 6.43 86.36 0.56 3.86 16 8 C -0.12 -3.96 5.36 30.67 0.16 -3.79 16 9 C -0.07 -2.49 2.10 -10.76 -0.02 -2.51 16 10 C 0.02 0.78 3.76 29.85 0.11 0.89 16 11 C -0.60 -32.24 8.39 25.60 0.21 -32.02 16 12 H 0.06 3.08 7.05 -2.91 -0.02 3.06 16 13 C -0.05 -2.59 5.46 84.66 0.46 -2.12 16 14 N -0.95 -58.44 13.65 21.45 0.29 -58.15 16 15 Si 1.12 48.60 29.90 68.60 2.05 50.66 16 16 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 19 C -0.11 -3.53 5.19 30.69 0.16 -3.37 16 20 C 0.11 2.41 6.34 86.38 0.55 2.96 16 21 C 0.09 1.14 2.46 45.13 0.11 1.25 16 22 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 23 C -0.12 -1.32 5.32 30.80 0.16 -1.16 16 24 C -0.05 -0.56 7.46 72.41 0.54 -0.02 16 25 S -0.34 -5.68 23.26 -56.49 -1.31 -6.99 16 26 C -0.05 -0.72 5.42 72.41 0.39 -0.33 16 27 H 0.03 0.52 8.09 -2.39 -0.02 0.50 16 28 H 0.08 1.33 6.08 -2.39 -0.01 1.32 16 29 H 0.06 1.65 5.96 -2.39 -0.01 1.63 16 30 H 0.08 1.19 7.63 -2.39 -0.02 1.18 16 31 H 0.13 1.55 5.97 -2.39 -0.01 1.54 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 2.31 7.01 -2.39 -0.02 2.30 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H -0.02 -1.11 8.01 -2.39 -0.02 -1.13 16 38 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 39 H 0.25 15.92 7.22 -92.70 -0.67 15.25 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 2.52 6.91 -2.38 -0.02 2.51 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.11 1.62 5.93 -2.39 -0.01 1.61 16 44 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.09 0.99 6.38 -2.39 -0.02 0.98 16 46 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.10 1.53 7.31 -2.39 -0.02 1.51 16 49 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.51 379.71 1.26 -69.25 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.02 Total: 14.83 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 5.49 Total: -20.51 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -5.95 Total: -88.88 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.66 kcal Atomic # 16 Polarization: -5.68 SS G_CDS: -1.31 Total: -6.99 kcal Total: -70.51 1.26 -69.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516573288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.391 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds