Wall clock time and date at job start Tue Mar 31 2020 14:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 110.99840 * 2 1 4 4 C 1.50702 * 109.47027 * 66.04299 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72353 * 4 3 2 7 7 C 1.46931 * 120.63086 * 0.02562 * 6 4 3 8 8 C 1.52760 * 109.00543 * 233.58109 * 7 6 4 9 9 C 1.53039 * 109.38459 * 305.58756 * 8 7 6 10 10 C 1.53007 * 109.46049 * 181.26411 * 9 8 7 11 11 C 1.50697 * 109.47113 * 64.93086 * 10 9 8 12 12 H 1.07999 * 120.00100 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00325 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47058 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47190 * 119.99798 * 15 13 11 18 18 H 1.48501 * 109.47075 * 239.99932 * 15 13 11 19 19 C 1.53042 * 109.54031 * 61.24177 * 9 8 7 20 20 C 1.46925 * 120.62933 * 180.27723 * 6 4 3 21 21 C 1.46892 * 111.00308 * 236.04719 * 2 1 3 22 22 H 1.08999 * 109.59946 * 64.27439 * 21 2 1 23 23 C 1.52939 * 109.60540 * 303.94914 * 21 2 1 24 24 C 1.53705 * 112.49695 * 209.96770 * 23 21 2 25 25 S 1.83398 * 104.96509 * 2.82919 * 24 23 21 26 26 C 1.55154 * 109.60526 * 184.41340 * 21 2 1 27 27 H 1.09001 * 109.47753 * 60.00231 * 1 2 3 28 28 H 1.09011 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47664 * 300.00084 * 1 2 3 30 30 H 1.09004 * 109.47131 * 306.04543 * 3 2 1 31 31 H 1.08994 * 109.47471 * 186.04293 * 3 2 1 32 32 H 1.08997 * 109.58191 * 353.41302 * 7 6 4 33 33 H 1.09000 * 109.58404 * 113.84014 * 7 6 4 34 34 H 1.09004 * 109.56227 * 185.55021 * 8 7 6 35 35 H 1.09000 * 109.38786 * 65.51167 * 8 7 6 36 36 H 1.09001 * 109.44620 * 301.22706 * 9 8 7 37 37 H 1.08999 * 109.46781 * 184.93065 * 10 9 8 38 38 H 1.09002 * 109.46610 * 304.93054 * 10 9 8 39 39 H 0.97001 * 120.00220 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.49700 * 178.68705 * 19 9 8 41 41 H 1.08998 * 109.49757 * 58.58603 * 19 9 8 42 42 H 1.09005 * 109.58470 * 246.15337 * 20 6 4 43 43 H 1.08991 * 109.58721 * 6.58154 * 20 6 4 44 44 H 1.08996 * 108.88801 * 330.76555 * 23 21 2 45 45 H 1.08999 * 108.88690 * 89.31237 * 23 21 2 46 46 H 1.09000 * 110.33917 * 121.69618 * 24 23 21 47 47 H 1.08999 * 110.34433 * 243.85003 * 24 23 21 48 48 H 1.08996 * 111.13327 * 279.28070 * 26 21 2 49 49 H 1.09002 * 111.12900 * 43.45694 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2984 5 8 1.0052 1.4454 2.1411 6 7 2.0230 3.3182 1.5258 7 6 2.7936 4.0582 0.5172 8 6 4.0631 4.6076 1.1655 9 6 3.6876 5.4316 2.3993 10 6 4.9555 6.0088 3.0319 11 6 5.5934 6.9851 2.0776 12 1 5.1402 7.1747 1.1158 13 6 6.7563 7.6356 2.4318 14 7 7.3086 7.4044 3.6028 15 14 7.5475 8.8453 1.2486 16 1 6.7363 8.9262 0.0074 17 1 7.6164 10.1859 1.8837 18 1 8.9192 8.3851 0.9138 19 6 2.9732 4.5365 3.4145 20 6 1.6862 3.9883 2.7892 21 6 1.9954 -0.7659 -1.1375 22 1 1.7104 -0.2784 -2.0698 23 6 1.4282 -2.1859 -1.1066 24 6 2.3900 -3.2168 -1.7187 25 16 3.8916 -2.2605 -2.1593 26 6 3.5424 -0.8389 -1.0446 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.5610 1.9274 -0.8309 31 1 3.0796 1.3445 -0.1082 32 1 3.0626 3.3893 -0.3003 33 1 2.1951 4.8847 0.1340 34 1 4.5925 5.2401 0.4529 35 1 4.7052 3.7787 1.4633 36 1 3.0259 6.2459 2.1042 37 1 4.6980 6.5219 3.9585 38 1 5.6548 5.2006 3.2464 39 1 8.1265 7.8623 3.8522 40 1 2.7269 5.1185 4.3026 41 1 3.6251 3.7079 3.6912 42 1 0.9958 4.8092 2.5947 43 1 1.2246 3.2734 3.4702 44 1 1.2261 -2.4627 -0.0719 45 1 0.4924 -2.2043 -1.6652 46 1 2.6331 -3.9885 -0.9883 47 1 1.9490 -3.6644 -2.6094 48 1 4.0022 0.0758 -1.4185 49 1 3.8653 -1.0504 -0.0252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516573289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:00 Heat of formation + Delta-G solvation = -38.050333 kcal Electronic energy + Delta-G solvation = -26285.650066 eV Core-core repulsion = 22759.328311 eV Total energy + Delta-G solvation = -3526.321755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32444 -38.61988 -37.19439 -34.05084 -33.99122 -32.21719 -30.97968 -29.98253 -28.84738 -27.70705 -25.32575 -24.79827 -23.72622 -22.81327 -21.68026 -20.31283 -19.80672 -18.65658 -17.57761 -16.68184 -16.66215 -16.31570 -15.70182 -15.53881 -15.26372 -14.58590 -14.52369 -14.34713 -14.00156 -13.72616 -13.63904 -13.23939 -13.19966 -12.83792 -12.79040 -12.47479 -12.42164 -12.27280 -12.01950 -11.94520 -11.72964 -11.46122 -11.26208 -11.22210 -11.01768 -10.82832 -10.73725 -10.48914 -10.31146 -10.14774 -9.76806 -9.60212 -9.31138 -8.99614 -8.65764 -8.39991 -8.36965 -8.03855 -6.03247 -4.05519 1.48009 1.94699 2.66854 2.93027 3.27466 3.35708 3.37931 3.62515 4.05862 4.37338 4.42084 4.47695 4.51904 4.66282 4.77786 4.92318 4.97832 5.07542 5.12996 5.21928 5.27443 5.31521 5.33506 5.35242 5.36760 5.43399 5.48419 5.49210 5.59911 5.64202 5.70648 5.87896 5.94679 6.03759 6.33258 6.33864 6.45289 6.53986 6.65868 6.69232 6.91855 6.94771 7.06699 7.53003 7.63599 7.77812 7.96397 8.27042 8.38343 9.01289 9.58600 11.08011 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.002644 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.592759 B =10586.182588 C =11895.055668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.033 3.967 4 C 0.516 3.484 5 O -0.533 6.533 6 N -0.606 5.606 7 C 0.104 3.896 8 C -0.120 4.120 9 C -0.080 4.080 10 C 0.027 3.973 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.129 4.129 20 C 0.114 3.886 21 C 0.083 3.917 22 H 0.058 0.942 23 C -0.125 4.125 24 C -0.067 4.067 25 S -0.292 6.292 26 C -0.064 4.064 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 -16.996 -10.874 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.240 5.240 3 C -0.097 4.097 4 C 0.303 3.697 5 O -0.410 6.410 6 N -0.340 5.340 7 C -0.019 4.019 8 C -0.158 4.158 9 C -0.099 4.099 10 C -0.010 4.010 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.168 4.168 20 C -0.008 4.008 21 C -0.027 4.027 22 H 0.076 0.924 23 C -0.164 4.164 24 C -0.215 4.215 25 S -0.067 6.067 26 C -0.212 4.212 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.117 0.883 48 H 0.125 0.875 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.845 -17.742 -10.660 24.360 hybrid contribution -0.446 1.474 -0.608 1.655 sum -13.291 -16.268 -11.268 23.839 Atomic orbital electron populations 1.22635 0.86102 1.02551 1.01918 1.61781 1.08979 1.11924 1.41307 1.22090 1.02301 0.89472 0.95885 1.20297 0.79564 0.81114 0.88684 1.90635 1.40252 1.63540 1.46594 1.48181 1.54519 1.12684 1.18615 1.21857 0.93906 0.95910 0.90234 1.21834 0.94993 0.99925 0.99061 1.21184 0.99193 0.95647 0.93847 1.19129 0.90575 0.95501 0.95783 1.21260 1.08201 1.23800 1.02187 0.92568 1.25028 0.97276 0.97013 0.95174 1.69972 1.20079 1.42946 1.20408 0.86597 0.79320 0.81193 0.81244 1.19764 1.21084 1.21081 1.22033 0.95734 0.99865 0.99122 1.21663 0.97640 0.96566 0.84973 1.22590 0.92755 0.94600 0.92779 0.92377 1.21970 0.98900 0.92202 1.03297 1.23866 0.94106 0.99578 1.03961 1.87964 1.35528 1.24421 1.58745 1.24489 0.96738 0.98062 1.01953 0.96050 0.91175 0.88896 0.91773 0.87586 0.90812 0.91453 0.89615 0.92223 0.92368 0.96586 0.96621 0.93068 0.91138 0.92040 0.91899 0.89657 0.89290 0.90380 0.88918 0.88328 0.87522 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.92 60.06 0.54 0.69 16 2 N -0.52 -5.22 4.30 -235.00 -1.01 -6.23 16 3 C 0.03 0.34 3.65 -4.97 -0.02 0.33 16 4 C 0.52 7.06 7.42 -10.98 -0.08 6.97 16 5 O -0.53 -8.85 13.72 5.55 0.08 -8.78 16 6 N -0.61 -8.25 2.98 -173.00 -0.52 -8.76 16 7 C 0.10 1.29 6.32 -3.93 -0.02 1.26 16 8 C -0.12 -1.94 5.17 -26.83 -0.14 -2.08 16 9 C -0.08 -1.49 2.10 -90.57 -0.19 -1.68 16 10 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 11 C -0.52 -13.70 8.39 -34.44 -0.29 -13.99 16 12 H 0.06 1.43 7.05 -52.49 -0.37 1.06 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 15 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.13 -2.11 5.36 -26.59 -0.14 -2.25 16 20 C 0.11 1.62 6.44 -3.69 -0.02 1.60 16 21 C 0.08 0.69 2.30 -66.61 -0.15 0.53 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 C -0.12 -0.87 4.56 -26.40 -0.12 -0.99 16 24 C -0.07 -0.46 7.38 37.52 0.28 -0.18 16 25 S -0.29 -2.81 23.23 -107.50 -2.50 -5.31 16 26 C -0.06 -0.57 5.92 38.30 0.23 -0.34 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.57 6.50 -51.92 -0.34 0.23 16 29 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 30 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 31 H 0.11 1.00 5.92 -51.93 -0.31 0.70 16 32 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 44 H 0.09 0.69 7.64 -51.93 -0.40 0.29 16 45 H 0.08 0.45 7.96 -51.93 -0.41 0.04 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.11 0.86 7.46 -51.93 -0.39 0.47 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -30.96 382.57 -11.42 -42.39 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.59 Total: -1.32 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.36 Total: -8.14 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.79 Total: -40.55 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.50 Total: -5.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.96 -11.42 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516573289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.335 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds