Wall clock time and date at job start Tue Mar 31 2020 14:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 110.99840 * 2 1 4 4 C 1.50702 * 109.47027 * 66.04299 * 3 2 1 5 5 O 1.21283 * 120.00262 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99928 * 179.72353 * 4 3 2 7 7 C 1.46931 * 120.63086 * 0.02562 * 6 4 3 8 8 C 1.52760 * 109.00543 * 233.58109 * 7 6 4 9 9 C 1.53039 * 109.38459 * 305.58756 * 8 7 6 10 10 C 1.53007 * 109.46049 * 181.26411 * 9 8 7 11 11 C 1.50697 * 109.47113 * 64.93086 * 10 9 8 12 12 H 1.07999 * 120.00100 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00325 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47058 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47190 * 119.99798 * 15 13 11 18 18 H 1.48501 * 109.47075 * 239.99932 * 15 13 11 19 19 C 1.53042 * 109.54031 * 61.24177 * 9 8 7 20 20 C 1.46925 * 120.62933 * 180.27723 * 6 4 3 21 21 C 1.46892 * 111.00308 * 236.04719 * 2 1 3 22 22 H 1.08999 * 109.59946 * 64.27439 * 21 2 1 23 23 C 1.52939 * 109.60540 * 303.94914 * 21 2 1 24 24 C 1.53705 * 112.49695 * 209.96770 * 23 21 2 25 25 S 1.83398 * 104.96509 * 2.82919 * 24 23 21 26 26 C 1.55154 * 109.60526 * 184.41340 * 21 2 1 27 27 H 1.09001 * 109.47753 * 60.00231 * 1 2 3 28 28 H 1.09011 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47664 * 300.00084 * 1 2 3 30 30 H 1.09004 * 109.47131 * 306.04543 * 3 2 1 31 31 H 1.08994 * 109.47471 * 186.04293 * 3 2 1 32 32 H 1.08997 * 109.58191 * 353.41302 * 7 6 4 33 33 H 1.09000 * 109.58404 * 113.84014 * 7 6 4 34 34 H 1.09004 * 109.56227 * 185.55021 * 8 7 6 35 35 H 1.09000 * 109.38786 * 65.51167 * 8 7 6 36 36 H 1.09001 * 109.44620 * 301.22706 * 9 8 7 37 37 H 1.08999 * 109.46781 * 184.93065 * 10 9 8 38 38 H 1.09002 * 109.46610 * 304.93054 * 10 9 8 39 39 H 0.97001 * 120.00220 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.49700 * 178.68705 * 19 9 8 41 41 H 1.08998 * 109.49757 * 58.58603 * 19 9 8 42 42 H 1.09005 * 109.58470 * 246.15337 * 20 6 4 43 43 H 1.08991 * 109.58721 * 6.58154 * 20 6 4 44 44 H 1.08996 * 108.88801 * 330.76555 * 23 21 2 45 45 H 1.08999 * 108.88690 * 89.31237 * 23 21 2 46 46 H 1.09000 * 110.33917 * 121.69618 * 24 23 21 47 47 H 1.08999 * 110.34433 * 243.85003 * 24 23 21 48 48 H 1.08996 * 111.13327 * 279.28070 * 26 21 2 49 49 H 1.09002 * 111.12900 * 43.45694 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2984 5 8 1.0052 1.4454 2.1411 6 7 2.0230 3.3182 1.5258 7 6 2.7936 4.0582 0.5172 8 6 4.0631 4.6076 1.1655 9 6 3.6876 5.4316 2.3993 10 6 4.9555 6.0088 3.0319 11 6 5.5934 6.9851 2.0776 12 1 5.1402 7.1747 1.1158 13 6 6.7563 7.6356 2.4318 14 7 7.3086 7.4044 3.6028 15 14 7.5475 8.8453 1.2486 16 1 6.7363 8.9262 0.0074 17 1 7.6164 10.1859 1.8837 18 1 8.9192 8.3851 0.9138 19 6 2.9732 4.5365 3.4145 20 6 1.6862 3.9883 2.7892 21 6 1.9954 -0.7659 -1.1375 22 1 1.7104 -0.2784 -2.0698 23 6 1.4282 -2.1859 -1.1066 24 6 2.3900 -3.2168 -1.7187 25 16 3.8916 -2.2605 -2.1593 26 6 3.5424 -0.8389 -1.0446 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.5610 1.9274 -0.8309 31 1 3.0796 1.3445 -0.1082 32 1 3.0626 3.3893 -0.3003 33 1 2.1951 4.8847 0.1340 34 1 4.5925 5.2401 0.4529 35 1 4.7052 3.7787 1.4633 36 1 3.0259 6.2459 2.1042 37 1 4.6980 6.5219 3.9585 38 1 5.6548 5.2006 3.2464 39 1 8.1265 7.8623 3.8522 40 1 2.7269 5.1185 4.3026 41 1 3.6251 3.7079 3.6912 42 1 0.9958 4.8092 2.5947 43 1 1.2246 3.2734 3.4702 44 1 1.2261 -2.4627 -0.0719 45 1 0.4924 -2.2043 -1.6652 46 1 2.6331 -3.9885 -0.9883 47 1 1.9490 -3.6644 -2.6094 48 1 4.0022 0.0758 -1.4185 49 1 3.8653 -1.0504 -0.0252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516573289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:59 Heat of formation + Delta-G solvation = -56.031591 kcal Electronic energy + Delta-G solvation = -26286.429792 eV Core-core repulsion = 22759.328311 eV Total energy + Delta-G solvation = -3527.101481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36149 -39.50685 -38.36565 -35.67562 -34.68124 -33.98870 -32.20117 -30.63613 -30.11613 -29.01741 -26.35514 -25.95417 -24.70275 -24.04720 -23.13601 -21.27959 -20.85875 -19.81872 -18.49986 -18.36658 -17.54352 -17.38396 -16.67813 -16.52797 -16.41128 -16.06624 -15.36085 -15.28195 -15.09648 -14.90276 -14.71679 -14.46062 -14.25577 -14.20256 -13.83504 -13.60460 -13.41015 -13.15832 -13.08878 -12.96750 -12.73123 -12.68221 -12.58925 -12.47620 -12.29691 -12.17167 -12.05777 -11.81763 -11.72114 -11.33429 -11.10131 -10.98506 -10.82662 -10.65007 -10.51990 -9.58220 -9.34834 -8.76784 -8.15600 -6.25105 0.83115 1.32440 1.41771 1.42854 1.54795 1.63741 1.95750 2.43474 2.86393 3.18544 3.41468 3.56897 3.78311 3.91401 3.99597 4.04790 4.07813 4.14323 4.17535 4.22858 4.24238 4.28876 4.43295 4.50641 4.53645 4.57362 4.60204 4.69910 4.72730 4.81259 4.83145 4.90396 4.93184 4.97780 5.01649 5.11759 5.17052 5.32961 5.34327 5.42405 5.56179 5.61735 5.81829 5.86240 5.91010 5.99682 6.29705 6.49115 6.92530 7.22531 7.43965 8.96673 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.002644 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.592759 B =10586.182588 C =11895.055668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.531 5.531 3 C 0.037 3.963 4 C 0.513 3.487 5 O -0.567 6.567 6 N -0.609 5.609 7 C 0.112 3.888 8 C -0.115 4.115 9 C -0.073 4.073 10 C 0.031 3.969 11 C -0.523 4.523 12 H 0.069 0.931 13 C -0.005 4.005 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.255 1.255 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.122 4.122 20 C 0.121 3.879 21 C 0.089 3.911 22 H 0.068 0.932 23 C -0.122 4.122 24 C -0.054 4.054 25 S -0.340 6.340 26 C -0.057 4.057 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.063 0.937 37 H -0.016 1.016 38 H -0.017 1.017 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.167 -17.240 -13.818 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.257 5.257 3 C -0.093 4.093 4 C 0.302 3.698 5 O -0.446 6.446 6 N -0.343 5.343 7 C -0.010 4.010 8 C -0.154 4.154 9 C -0.091 4.091 10 C -0.006 4.006 11 C -0.561 4.561 12 H 0.087 0.913 13 C -0.202 4.202 14 N -0.580 5.580 15 Si 0.785 3.215 16 H -0.178 1.178 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.160 4.160 20 C -0.001 4.001 21 C -0.021 4.021 22 H 0.086 0.914 23 C -0.161 4.161 24 C -0.202 4.202 25 S -0.114 6.114 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.306 -17.992 -13.629 26.723 hybrid contribution 0.013 1.508 0.396 1.559 sum -14.294 -16.484 -13.233 25.518 Atomic orbital electron populations 1.22549 0.85802 1.03183 1.01203 1.61724 1.09389 1.11998 1.42566 1.22100 1.03015 0.89763 0.94442 1.20927 0.78682 0.80704 0.89525 1.90628 1.41744 1.64166 1.48038 1.48266 1.54556 1.12997 1.18438 1.21871 0.91850 0.97080 0.90157 1.21723 0.96927 0.98947 0.97755 1.21030 0.96460 0.96453 0.95169 1.19033 0.92653 0.94143 0.94741 1.21699 1.08137 1.23492 1.02762 0.91267 1.25982 0.98197 0.99176 0.96860 1.70124 1.20728 1.44522 1.22637 0.85471 0.78282 0.78321 0.79427 1.17849 1.21039 1.20946 1.21910 0.96490 0.98831 0.98774 1.21508 0.96247 0.96900 0.85459 1.22593 0.92044 0.95069 0.92394 0.91380 1.21959 0.99531 0.91428 1.03150 1.23942 0.92293 0.99199 1.04762 1.88132 1.38054 1.26007 1.59255 1.24457 0.97415 0.97815 1.00844 0.94623 0.89958 0.91587 0.89259 0.86610 0.87424 0.89652 0.90454 0.93593 0.91839 0.99785 0.99830 0.93113 0.91335 0.93766 0.90154 0.90293 0.90053 0.88532 0.88501 0.86660 0.86766 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.92 127.69 1.14 1.48 16 2 N -0.53 -9.54 4.30 -897.40 -3.86 -13.40 16 3 C 0.04 0.66 3.65 85.56 0.31 0.98 16 4 C 0.51 13.09 7.42 87.66 0.65 13.75 16 5 O -0.57 -18.43 13.72 -3.04 -0.04 -18.48 16 6 N -0.61 -15.36 2.98 -819.65 -2.44 -17.80 16 7 C 0.11 2.45 6.32 86.22 0.54 3.00 16 8 C -0.12 -3.61 5.17 30.53 0.16 -3.45 16 9 C -0.07 -2.70 2.10 -10.76 -0.02 -2.72 16 10 C 0.03 1.58 4.45 29.85 0.13 1.72 16 11 C -0.52 -27.97 8.39 25.60 0.21 -27.76 16 12 H 0.07 3.45 7.05 -2.91 -0.02 3.43 16 13 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 14 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 15 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 16 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C -0.12 -4.03 5.36 30.69 0.16 -3.86 16 20 C 0.12 3.34 6.44 86.38 0.56 3.90 16 21 C 0.09 1.24 2.30 45.63 0.11 1.34 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 23 C -0.12 -1.39 4.56 30.81 0.14 -1.25 16 24 C -0.05 -0.63 7.38 72.22 0.53 -0.09 16 25 S -0.34 -6.09 23.23 -56.49 -1.31 -7.40 16 26 C -0.06 -0.91 5.92 72.72 0.43 -0.48 16 27 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 1.14 6.50 -2.38 -0.02 1.13 16 29 H 0.07 1.51 5.88 -2.39 -0.01 1.50 16 30 H 0.09 1.17 7.93 -2.38 -0.02 1.15 16 31 H 0.12 1.84 5.92 -2.39 -0.01 1.83 16 32 H 0.11 1.67 5.93 -2.39 -0.01 1.65 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.56 6.91 -2.38 -0.02 2.54 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.08 2.31 7.00 -2.39 -0.02 2.30 16 44 H 0.08 1.09 7.64 -2.39 -0.02 1.07 16 45 H 0.10 0.77 7.96 -2.39 -0.02 0.75 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.11 1.61 7.46 -2.39 -0.02 1.59 16 49 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -69.33 382.57 1.09 -68.24 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.91 Total: 13.65 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.52 Total: -13.28 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -6.02 Total: -87.72 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.04 Total: -18.48 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -1.31 Total: -7.40 kcal Total: -69.33 1.09 -68.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516573289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.204 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds