Wall clock time and date at job start Tue Mar 31 2020 14:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99793 * 2 1 4 4 C 1.53002 * 112.85030 * 305.21001 * 3 2 1 5 5 N 1.46505 * 109.46939 * 282.96396 * 4 3 2 6 6 C 1.34769 * 119.99872 * 175.38263 * 5 4 3 7 7 O 1.21591 * 120.00184 * 5.36497 * 6 5 4 8 8 N 1.34774 * 120.00053 * 185.37086 * 6 5 4 9 9 C 1.46921 * 120.63060 * 354.58154 * 8 6 5 10 10 C 1.53621 * 108.54499 * 126.37018 * 9 8 6 11 11 C 1.53035 * 109.24400 * 54.85547 * 10 9 8 12 12 C 1.53000 * 109.46195 * 178.49041 * 11 10 9 13 13 C 1.50696 * 109.47176 * 295.06768 * 12 11 10 14 14 H 1.08006 * 120.00288 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00199 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00419 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46658 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47065 * 119.99689 * 17 15 13 20 20 H 1.48500 * 109.47226 * 240.00343 * 17 15 13 21 21 C 1.53039 * 109.53839 * 298.51409 * 11 10 9 22 22 C 1.46931 * 120.63045 * 174.86012 * 8 6 5 23 23 C 1.53785 * 113.69138 * 76.47949 * 3 2 1 24 24 C 1.53780 * 87.08170 * 139.98956 * 23 3 2 25 25 C 1.53779 * 87.08279 * 334.56818 * 24 23 3 26 26 H 1.09002 * 109.47210 * 305.52639 * 1 2 3 27 27 H 1.08997 * 109.47460 * 65.52062 * 1 2 3 28 28 H 1.09005 * 109.47228 * 185.52330 * 1 2 3 29 29 H 1.08999 * 109.46973 * 162.96703 * 4 3 2 30 30 H 1.08998 * 109.47036 * 42.96411 * 4 3 2 31 31 H 0.97001 * 119.99835 * 355.38384 * 5 4 3 32 32 H 1.09008 * 109.58648 * 246.20131 * 9 8 6 33 33 H 1.08998 * 109.58817 * 6.62556 * 9 8 6 34 34 H 1.08997 * 109.63628 * 294.86418 * 10 9 8 35 35 H 1.09003 * 109.46000 * 174.74339 * 10 9 8 36 36 H 1.09005 * 109.44954 * 58.52720 * 11 10 9 37 37 H 1.08999 * 109.47202 * 55.06957 * 12 11 10 38 38 H 1.08999 * 109.47256 * 175.07011 * 12 11 10 39 39 H 0.97000 * 119.99555 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.49737 * 301.40845 * 21 11 10 41 41 H 1.09004 * 109.52549 * 181.33182 * 21 11 10 42 42 H 1.08994 * 109.58888 * 353.37267 * 22 8 6 43 43 H 1.09006 * 109.58638 * 113.65527 * 22 8 6 44 44 H 1.08997 * 113.61237 * 254.53846 * 23 3 2 45 45 H 1.09001 * 113.61352 * 25.43882 * 23 3 2 46 46 H 1.08997 * 113.61460 * 220.01251 * 24 23 3 47 47 H 1.09004 * 113.61030 * 89.11408 * 24 23 3 48 48 H 1.09000 * 113.61331 * 270.88171 * 25 24 23 49 49 H 1.09002 * 113.61911 * 139.98029 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.5635 2.5293 -1.1520 5 7 2.2931 2.2625 -2.3941 6 6 1.8371 2.7552 -3.5626 7 8 0.8769 3.5011 -3.5746 8 7 2.4453 2.4212 -4.7180 9 6 3.6756 1.6182 -4.7114 10 6 3.4694 0.4008 -5.6253 11 6 3.0392 0.8795 -7.0138 12 6 2.8687 -0.3272 -7.9389 13 6 4.2034 -0.9968 -8.1421 14 1 5.0851 -0.6011 -7.6601 15 6 4.2989 -2.1147 -8.9435 16 7 3.2253 -2.5963 -9.5310 17 14 5.9531 -2.9452 -9.1949 18 1 6.9955 -2.2135 -8.4311 19 1 5.8805 -4.3486 -8.7148 20 1 6.2986 -2.9333 -10.6392 21 6 1.7107 1.6318 -6.9070 22 6 1.8940 2.8584 -6.0079 23 6 2.0402 2.4437 1.3692 24 6 3.3348 3.2181 1.0708 25 6 3.7260 2.0526 0.1470 26 1 -0.3634 0.5972 0.8364 27 1 -0.3634 0.4258 -0.9352 28 1 -0.3634 -1.0229 0.0989 29 1 1.5855 3.5983 -0.9402 30 1 0.5296 2.2016 -1.2603 31 1 3.1044 1.7311 -2.3754 32 1 4.5064 2.2194 -5.0810 33 1 3.8878 1.2830 -3.6962 34 1 2.6965 -0.2443 -5.2074 35 1 4.4033 -0.1555 -5.7055 36 1 3.8012 1.5442 -7.4207 37 1 2.1721 -1.0345 -7.4889 38 1 2.4786 0.0048 -8.9010 39 1 3.2925 -3.3830 -10.0944 40 1 0.9544 0.9752 -6.4769 41 1 1.3927 1.9522 -7.8991 42 1 0.9302 3.3418 -5.8483 43 1 2.5812 3.5607 -6.4799 44 1 1.1558 3.0781 1.4289 45 1 2.1266 1.7562 2.2106 46 1 3.9878 3.3271 1.9367 47 1 3.1699 4.1573 0.5428 48 1 4.2735 1.2582 0.6542 49 1 4.2027 2.3712 -0.7801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516647036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:01 Heat of formation + Delta-G solvation = -18.613035 kcal Electronic energy + Delta-G solvation = -26418.801055 eV Core-core repulsion = 22893.322164 eV Total energy + Delta-G solvation = -3525.478890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50770 -39.36931 -37.36921 -34.45449 -33.90513 -32.08396 -30.70093 -29.50898 -28.39525 -27.47535 -26.16005 -24.71649 -23.89898 -22.83178 -21.78765 -20.03146 -19.60040 -19.03530 -18.03935 -17.16951 -16.35479 -16.18187 -15.69219 -15.46161 -14.87231 -14.53692 -14.44478 -14.07127 -13.99393 -13.69759 -13.56490 -13.43561 -13.18402 -12.92862 -12.79490 -12.73239 -12.62484 -12.46311 -12.15075 -11.78642 -11.30862 -11.18465 -11.03293 -10.95576 -10.81514 -10.77402 -10.69034 -10.46375 -10.09786 -10.03317 -9.96838 -9.62760 -9.28258 -9.11320 -8.94053 -8.35503 -8.21652 -7.90253 -5.99700 -4.01588 1.42944 2.25195 2.70014 3.30155 3.31870 3.38155 3.40841 3.81548 4.01872 4.11420 4.20334 4.33533 4.45384 4.87163 4.90397 4.94742 5.12789 5.14206 5.25149 5.30133 5.33453 5.35315 5.40591 5.47094 5.49127 5.50076 5.54683 5.57235 5.67476 5.70275 5.76693 5.90200 6.02285 6.11763 6.37808 6.40671 6.41796 6.52416 6.67087 6.98009 7.02024 7.09551 7.12738 7.67813 7.82506 8.00295 8.02965 8.42663 8.68355 9.05204 9.62270 11.11607 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002921 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.984142 B = 9584.782769 C =10331.630164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.240 6.240 3 C -0.073 4.073 4 C 0.165 3.835 5 N -0.743 5.743 6 C 0.709 3.291 7 O -0.601 6.601 8 N -0.621 5.621 9 C 0.110 3.890 10 C -0.117 4.117 11 C -0.079 4.079 12 C 0.027 3.973 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.130 4.130 22 C 0.131 3.869 23 C -0.118 4.118 24 C -0.136 4.136 25 C -0.109 4.109 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 10.707 22.253 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.010 6.010 3 C -0.183 4.183 4 C 0.038 3.962 5 N -0.402 5.402 6 C 0.411 3.589 7 O -0.481 6.481 8 N -0.357 5.357 9 C -0.013 4.013 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.010 4.010 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.168 4.168 22 C 0.008 3.992 23 C -0.158 4.158 24 C -0.175 4.175 25 C -0.148 4.148 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.237 0.763 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.716 10.169 22.103 24.391 hybrid contribution 0.382 -0.043 -0.328 0.506 sum -1.333 10.126 21.775 24.051 Atomic orbital electron populations 1.23401 0.94293 1.06426 1.05105 1.86868 1.07537 1.09023 1.97556 1.24542 1.01155 0.94005 0.98633 1.20966 0.95120 0.98949 0.81154 1.45154 1.30848 1.58639 1.05560 1.15768 0.82376 0.80439 0.80355 1.90875 1.30236 1.40781 1.86198 1.47318 1.27762 1.55723 1.04933 1.21891 0.86029 0.93479 0.99937 1.21962 1.03001 0.95378 0.95209 1.21171 0.94540 0.98677 0.95414 1.19126 0.96997 0.91209 0.93635 1.21275 0.94377 1.11190 1.28487 0.92556 1.25027 0.96263 0.97291 0.95922 1.69976 1.28026 1.23530 1.31938 0.86598 0.84450 0.79439 0.77876 1.19750 1.21099 1.21121 1.22045 0.99563 0.96358 0.98849 1.21539 0.99327 0.96693 0.81623 1.23214 0.98978 0.99000 0.94625 1.22830 0.97297 0.97417 0.99912 1.22807 0.92169 0.98777 1.01005 0.90444 0.90271 0.88099 0.90843 0.91330 0.76279 0.91528 0.91592 0.92189 0.89820 0.92377 0.96659 0.96605 0.93121 0.92138 0.91125 0.89721 0.92083 0.90704 0.88413 0.90491 0.89595 0.88691 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.12 101.05 1.02 -0.02 16 2 S -0.24 -2.38 21.82 -107.50 -2.35 -4.73 16 3 C -0.07 -0.60 0.93 -89.80 -0.08 -0.68 16 4 C 0.16 1.71 5.00 -4.04 -0.02 1.69 16 5 N -0.74 -8.97 5.12 -65.22 -0.33 -9.30 16 6 C 0.71 11.03 8.29 -86.93 -0.72 10.31 16 7 O -0.60 -11.25 15.79 5.29 0.08 -11.16 16 8 N -0.62 -9.35 2.97 -178.23 -0.53 -9.88 16 9 C 0.11 1.51 6.46 -3.49 -0.02 1.48 16 10 C -0.12 -2.02 5.21 -26.39 -0.14 -2.16 16 11 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 12 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 13 C -0.51 -13.92 8.39 -34.44 -0.29 -14.21 16 14 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.13 -2.21 5.36 -26.61 -0.14 -2.36 16 22 C 0.13 2.01 6.42 -3.71 -0.02 1.99 16 23 C -0.12 -0.75 7.20 -25.92 -0.19 -0.94 16 24 C -0.14 -0.81 7.73 -25.92 -0.20 -1.01 16 25 C -0.11 -0.78 6.93 -25.92 -0.18 -0.96 16 26 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.08 0.74 7.05 -51.93 -0.37 0.38 16 28 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.07 0.76 7.40 -51.93 -0.38 0.38 16 30 H 0.07 0.79 6.34 -51.93 -0.33 0.47 16 31 H 0.40 4.34 4.79 -40.82 -0.20 4.15 16 32 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.07 0.76 5.57 -51.93 -0.29 0.47 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.53 6.91 -51.93 -0.36 1.17 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.35 7.04 -51.93 -0.37 0.98 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 45 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.53 7.73 -51.93 -0.40 0.13 16 48 H 0.09 0.68 8.10 -51.93 -0.42 0.25 16 49 H 0.08 0.59 6.93 -51.93 -0.36 0.23 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -31.84 388.87 -11.41 -43.25 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.47 Total: 2.18 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.39 Total: -6.57 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.13 Total: -45.07 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -2.35 Total: -4.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.84 -11.41 -43.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516647036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.638 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds