Wall clock time and date at job start Tue Mar 31 2020 14:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99793 * 2 1 4 4 C 1.53002 * 112.85030 * 305.21001 * 3 2 1 5 5 N 1.46505 * 109.46939 * 282.96396 * 4 3 2 6 6 C 1.34769 * 119.99872 * 175.38263 * 5 4 3 7 7 O 1.21591 * 120.00184 * 5.36497 * 6 5 4 8 8 N 1.34774 * 120.00053 * 185.37086 * 6 5 4 9 9 C 1.46921 * 120.63060 * 354.58154 * 8 6 5 10 10 C 1.53621 * 108.54499 * 126.37018 * 9 8 6 11 11 C 1.53035 * 109.24400 * 54.85547 * 10 9 8 12 12 C 1.53000 * 109.46195 * 178.49041 * 11 10 9 13 13 C 1.50696 * 109.47176 * 295.06768 * 12 11 10 14 14 H 1.08006 * 120.00288 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00199 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00419 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46658 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47065 * 119.99689 * 17 15 13 20 20 H 1.48500 * 109.47226 * 240.00343 * 17 15 13 21 21 C 1.53039 * 109.53839 * 298.51409 * 11 10 9 22 22 C 1.46931 * 120.63045 * 174.86012 * 8 6 5 23 23 C 1.53785 * 113.69138 * 76.47949 * 3 2 1 24 24 C 1.53780 * 87.08170 * 139.98956 * 23 3 2 25 25 C 1.53779 * 87.08279 * 334.56818 * 24 23 3 26 26 H 1.09002 * 109.47210 * 305.52639 * 1 2 3 27 27 H 1.08997 * 109.47460 * 65.52062 * 1 2 3 28 28 H 1.09005 * 109.47228 * 185.52330 * 1 2 3 29 29 H 1.08999 * 109.46973 * 162.96703 * 4 3 2 30 30 H 1.08998 * 109.47036 * 42.96411 * 4 3 2 31 31 H 0.97001 * 119.99835 * 355.38384 * 5 4 3 32 32 H 1.09008 * 109.58648 * 246.20131 * 9 8 6 33 33 H 1.08998 * 109.58817 * 6.62556 * 9 8 6 34 34 H 1.08997 * 109.63628 * 294.86418 * 10 9 8 35 35 H 1.09003 * 109.46000 * 174.74339 * 10 9 8 36 36 H 1.09005 * 109.44954 * 58.52720 * 11 10 9 37 37 H 1.08999 * 109.47202 * 55.06957 * 12 11 10 38 38 H 1.08999 * 109.47256 * 175.07011 * 12 11 10 39 39 H 0.97000 * 119.99555 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.49737 * 301.40845 * 21 11 10 41 41 H 1.09004 * 109.52549 * 181.33182 * 21 11 10 42 42 H 1.08994 * 109.58888 * 353.37267 * 22 8 6 43 43 H 1.09006 * 109.58638 * 113.65527 * 22 8 6 44 44 H 1.08997 * 113.61237 * 254.53846 * 23 3 2 45 45 H 1.09001 * 113.61352 * 25.43882 * 23 3 2 46 46 H 1.08997 * 113.61460 * 220.01251 * 24 23 3 47 47 H 1.09004 * 113.61030 * 89.11408 * 24 23 3 48 48 H 1.09000 * 113.61331 * 270.88171 * 25 24 23 49 49 H 1.09002 * 113.61911 * 139.98029 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.5635 2.5293 -1.1520 5 7 2.2931 2.2625 -2.3941 6 6 1.8371 2.7552 -3.5626 7 8 0.8769 3.5011 -3.5746 8 7 2.4453 2.4212 -4.7180 9 6 3.6756 1.6182 -4.7114 10 6 3.4694 0.4008 -5.6253 11 6 3.0392 0.8795 -7.0138 12 6 2.8687 -0.3272 -7.9389 13 6 4.2034 -0.9968 -8.1421 14 1 5.0851 -0.6011 -7.6601 15 6 4.2989 -2.1147 -8.9435 16 7 3.2253 -2.5963 -9.5310 17 14 5.9531 -2.9452 -9.1949 18 1 6.9955 -2.2135 -8.4311 19 1 5.8805 -4.3486 -8.7148 20 1 6.2986 -2.9333 -10.6392 21 6 1.7107 1.6318 -6.9070 22 6 1.8940 2.8584 -6.0079 23 6 2.0402 2.4437 1.3692 24 6 3.3348 3.2181 1.0708 25 6 3.7260 2.0526 0.1470 26 1 -0.3634 0.5972 0.8364 27 1 -0.3634 0.4258 -0.9352 28 1 -0.3634 -1.0229 0.0989 29 1 1.5855 3.5983 -0.9402 30 1 0.5296 2.2016 -1.2603 31 1 3.1044 1.7311 -2.3754 32 1 4.5064 2.2194 -5.0810 33 1 3.8878 1.2830 -3.6962 34 1 2.6965 -0.2443 -5.2074 35 1 4.4033 -0.1555 -5.7055 36 1 3.8012 1.5442 -7.4207 37 1 2.1721 -1.0345 -7.4889 38 1 2.4786 0.0048 -8.9010 39 1 3.2925 -3.3830 -10.0944 40 1 0.9544 0.9752 -6.4769 41 1 1.3927 1.9522 -7.8991 42 1 0.9302 3.3418 -5.8483 43 1 2.5812 3.5607 -6.4799 44 1 1.1558 3.0781 1.4289 45 1 2.1266 1.7562 2.2106 46 1 3.9878 3.3271 1.9367 47 1 3.1699 4.1573 0.5428 48 1 4.2735 1.2582 0.6542 49 1 4.2027 2.3712 -0.7801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516647036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:00 Heat of formation + Delta-G solvation = -35.808522 kcal Electronic energy + Delta-G solvation = -26419.546707 eV Core-core repulsion = 22893.322164 eV Total energy + Delta-G solvation = -3526.224543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60266 -40.15916 -38.73217 -35.72300 -35.42790 -33.90193 -31.99801 -30.34161 -29.79630 -28.59456 -26.73376 -26.23093 -24.80918 -24.17454 -23.35119 -21.44666 -20.62646 -19.98285 -19.15192 -18.39376 -17.93004 -17.32800 -16.64877 -16.53633 -16.34915 -15.73698 -15.50268 -15.25303 -15.09979 -14.80653 -14.70586 -14.43266 -14.35026 -14.19758 -13.91964 -13.79325 -13.49332 -13.33157 -13.26612 -13.18106 -12.96187 -12.72537 -12.51797 -12.30209 -12.14972 -11.88984 -11.72368 -11.56510 -11.42912 -11.34476 -11.25396 -10.98658 -10.83091 -10.74609 -10.51693 -10.21746 -9.44753 -8.67562 -8.15132 -6.24525 0.74202 1.41972 1.42804 1.53604 1.55062 1.62685 2.11029 2.43898 2.82531 3.18902 3.40364 3.42321 3.53734 3.82656 3.92330 4.00976 4.08195 4.20371 4.22933 4.28156 4.34954 4.39270 4.41321 4.51581 4.54626 4.68310 4.77020 4.79530 4.81099 4.85995 4.90456 4.96348 4.97870 5.05744 5.09541 5.11250 5.31260 5.33701 5.38965 5.40331 5.42733 5.56027 5.60210 5.82761 5.90962 5.95341 6.30575 6.90192 6.92807 7.44345 7.49607 8.97138 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002921 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.984142 B = 9584.782769 C =10331.630164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.281 6.281 3 C -0.066 4.066 4 C 0.165 3.835 5 N -0.730 5.730 6 C 0.705 3.295 7 O -0.635 6.635 8 N -0.624 5.624 9 C 0.119 3.881 10 C -0.111 4.111 11 C -0.071 4.071 12 C 0.032 3.968 13 C -0.524 4.524 14 H 0.069 0.931 15 C -0.005 4.005 16 N -0.938 5.938 17 Si 0.960 3.040 18 H -0.256 1.256 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.122 4.122 22 C 0.138 3.862 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.109 4.109 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.406 0.594 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.065 0.935 37 H -0.018 1.018 38 H -0.014 1.014 39 H 0.260 0.740 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 11.858 24.185 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.052 6.052 3 C -0.176 4.176 4 C 0.039 3.961 5 N -0.389 5.389 6 C 0.407 3.593 7 O -0.517 6.517 8 N -0.360 5.360 9 C -0.003 4.003 10 C -0.150 4.150 11 C -0.090 4.090 12 C -0.005 4.005 13 C -0.562 4.562 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.580 5.580 17 Si 0.785 3.215 18 H -0.179 1.179 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.160 4.160 22 C 0.015 3.985 23 C -0.151 4.151 24 C -0.166 4.166 25 C -0.148 4.148 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.000 1.000 38 H 0.004 0.996 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.122 0.878 46 H 0.110 0.890 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.343 11.317 24.068 26.598 hybrid contribution -0.321 -0.424 -0.944 1.084 sum 0.022 10.892 23.123 25.560 Atomic orbital electron populations 1.23390 0.92952 1.07036 1.05064 1.86988 1.09208 1.11334 1.97627 1.24576 1.01948 0.92159 0.98894 1.21040 0.94525 0.99495 0.81067 1.45092 1.30879 1.57728 1.05173 1.15921 0.81985 0.80326 0.81069 1.90852 1.31705 1.42408 1.86741 1.47352 1.28113 1.55745 1.04778 1.21880 0.85954 0.91894 1.00579 1.21834 1.01798 0.96746 0.94587 1.21017 0.96002 0.96513 0.95462 1.19020 0.95466 0.92730 0.93242 1.21705 0.95372 1.11171 1.27933 0.91335 1.25980 1.00142 0.98269 0.95786 1.70126 1.30587 1.24237 1.33012 0.85468 0.79954 0.78213 0.77849 1.17922 1.20934 1.20934 1.21926 0.97770 0.96751 0.99556 1.21432 0.99817 0.95688 0.81530 1.23221 0.99636 0.98894 0.93377 1.22807 0.97016 0.96767 1.00052 1.22864 0.91147 0.99414 1.01383 0.88776 0.91609 0.87584 0.90376 0.92705 0.75451 0.89441 0.89040 0.93969 0.90597 0.91623 0.99962 0.99557 0.93114 0.93891 0.90861 0.90248 0.90063 0.90069 0.87804 0.89020 0.89552 0.88419 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 10.12 113.37 1.15 -0.73 16 2 S -0.28 -5.33 21.82 -56.49 -1.23 -6.56 16 3 C -0.07 -0.97 0.93 -10.26 -0.01 -0.98 16 4 C 0.17 3.21 5.00 86.38 0.43 3.64 16 5 N -0.73 -16.50 5.12 -478.53 -2.45 -18.95 16 6 C 0.71 21.05 8.29 179.06 1.48 22.53 16 7 O -0.63 -23.32 15.79 -4.00 -0.06 -23.39 16 8 N -0.62 -17.77 2.97 -836.07 -2.48 -20.25 16 9 C 0.12 2.99 6.46 86.51 0.56 3.55 16 10 C -0.11 -3.76 5.21 30.81 0.16 -3.60 16 11 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 12 C 0.03 1.67 4.45 29.85 0.13 1.80 16 13 C -0.52 -28.52 8.39 25.60 0.21 -28.30 16 14 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 15 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 16 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 17 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 22 C 0.14 4.08 6.42 86.36 0.55 4.63 16 23 C -0.11 -1.15 7.20 31.12 0.22 -0.93 16 24 C -0.13 -1.16 7.73 31.12 0.24 -0.92 16 25 C -0.11 -1.32 6.93 31.12 0.22 -1.10 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.24 7.05 -2.39 -0.02 1.22 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.48 7.40 -2.39 -0.02 1.47 16 30 H 0.05 1.24 6.34 -2.39 -0.02 1.23 16 31 H 0.41 7.96 4.79 -92.71 -0.44 7.52 16 32 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.09 1.84 5.57 -2.39 -0.01 1.83 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 2.69 6.91 -2.39 -0.02 2.67 16 36 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 37 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.08 2.47 7.04 -2.39 -0.02 2.46 16 43 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 45 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 46 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.82 7.73 -2.39 -0.02 0.80 16 48 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 49 H 0.08 0.96 6.93 -2.39 -0.02 0.94 16 Total: -1.00 -70.08 388.87 2.53 -67.55 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.48 Total: 20.01 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.96 Total: -6.99 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -4.65 Total: -96.20 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.23 Total: -6.56 kcal Total: -70.08 2.53 -67.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516647036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.746 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds