Wall clock time and date at job start Tue Mar 31 2020 15:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46929 * 2 1 4 4 C 1.53508 * 114.17023 * 174.99909 * 3 2 1 5 5 N 1.47482 * 87.93677 * 139.86029 * 4 3 2 6 6 C 1.46898 * 111.00177 * 221.29753 * 5 4 3 7 7 C 1.50700 * 109.46992 * 169.99520 * 6 5 4 8 8 C 1.35068 * 126.07471 * 260.00005 * 7 6 5 9 9 N 1.35058 * 107.98520 * 179.97438 * 8 7 6 10 10 C 1.46502 * 125.92975 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46855 * 125.00135 * 10 9 8 12 12 H 1.07992 * 120.00229 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99501 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99818 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47150 * 90.00329 * 15 13 11 17 17 H 1.48504 * 109.47221 * 210.00451 * 15 13 11 18 18 H 1.48506 * 109.47124 * 330.00464 * 15 13 11 19 19 N 1.40068 * 108.14279 * 359.75463 * 9 8 7 20 20 C 1.31654 * 108.10207 * 0.41679 * 19 9 8 21 21 C 1.48369 * 126.04348 * 179.85433 * 20 19 9 22 22 C 1.39765 * 120.90260 * 324.69155 * 21 20 19 23 23 C 1.37965 * 119.02119 * 179.97438 * 22 21 20 24 24 N 1.31927 * 120.87852 * 0.02562 * 23 22 21 25 25 C 1.31939 * 122.00954 * 359.97438 * 24 23 22 26 26 C 1.37959 * 120.87633 * 0.02562 * 25 24 23 27 27 C 1.47488 * 87.82990 * 332.99039 * 5 4 3 28 28 H 1.09007 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47145 * 299.99965 * 1 2 3 30 30 H 1.09001 * 109.47133 * 60.00482 * 1 2 3 31 31 H 1.08997 * 109.47145 * 240.00035 * 2 1 3 32 32 H 1.09001 * 109.47133 * 119.99518 * 2 1 3 33 33 H 1.08994 * 113.25922 * 42.04709 * 3 2 1 34 34 H 1.09004 * 113.48001 * 25.09270 * 4 3 2 35 35 H 1.08998 * 113.53429 * 254.63458 * 4 3 2 36 36 H 1.09001 * 109.47120 * 50.00275 * 6 5 4 37 37 H 1.08992 * 109.47402 * 289.99628 * 6 5 4 38 38 H 1.08002 * 126.01078 * 0.02562 * 8 7 6 39 39 H 1.08993 * 109.47304 * 245.00281 * 10 9 8 40 40 H 1.09000 * 109.46787 * 5.00189 * 10 9 8 41 41 H 0.96998 * 119.99827 * 180.02562 * 14 13 11 42 42 H 1.08002 * 120.48777 * 0.24814 * 22 21 20 43 43 H 1.08001 * 119.55813 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.56199 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.49168 * 180.02562 * 26 25 24 46 46 H 1.09003 * 113.47461 * 141.77826 * 27 5 4 47 47 H 1.08997 * 113.47255 * 272.24048 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.5701 0.1221 5 7 3.4995 2.6604 -0.8689 6 6 4.6025 2.5615 -1.8340 7 6 4.3695 3.5308 -2.9642 8 6 3.8684 3.2278 -4.1813 9 7 3.8147 4.3666 -4.9054 10 6 3.3326 4.4870 -6.2836 11 6 2.2449 5.5282 -6.3461 12 1 1.9432 6.0484 -5.4491 13 6 1.6349 5.8165 -7.5485 14 7 0.6860 6.7255 -7.6031 15 14 2.1572 4.9171 -9.1002 16 1 1.3359 3.6905 -9.2615 17 1 1.9603 5.8029 -10.2758 18 1 3.5906 4.5430 -8.9967 19 7 4.2940 5.4136 -4.1080 20 6 4.6352 4.9140 -2.9387 21 6 5.1946 5.6745 -1.7941 22 6 6.0613 6.7510 -2.0024 23 6 6.5582 7.4313 -0.9099 24 7 6.2258 7.0773 0.3168 25 6 5.4111 6.0676 0.5568 26 6 4.8692 5.3338 -0.4781 27 6 2.2757 2.0303 -1.3984 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4823 2.0962 0.6707 34 1 4.1040 0.6920 -0.2334 35 1 3.8967 1.8980 1.1072 36 1 4.6493 1.5469 -2.2295 37 1 5.5425 2.8016 -1.3374 38 1 3.5634 2.2474 -4.5163 39 1 4.1568 4.7833 -6.9323 40 1 2.9363 3.5272 -6.6150 41 1 0.2566 6.9280 -8.4490 42 1 6.3344 7.0487 -3.0040 43 1 7.2289 8.2643 -1.0608 44 1 5.1659 5.8117 1.5769 45 1 4.2026 4.5087 -0.2745 46 1 1.5138 2.7485 -1.7016 47 1 2.4707 1.2750 -2.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520735963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:51 Heat of formation + Delta-G solvation = 145.775959 kcal Electronic energy + Delta-G solvation = -27332.877401 eV Core-core repulsion = 23711.375752 eV Total energy + Delta-G solvation = -3621.501649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03190 -40.00300 -39.49087 -34.54294 -33.75215 -32.82090 -31.55344 -31.03091 -30.62204 -28.56366 -27.19277 -25.97633 -24.48128 -24.10653 -23.12033 -22.17081 -21.53971 -20.21940 -19.64198 -19.34975 -17.15391 -16.69643 -16.10285 -15.81067 -15.71132 -15.52236 -15.19299 -14.90599 -14.55834 -14.14564 -13.97640 -13.65909 -13.53005 -13.22735 -13.15227 -13.11298 -12.71486 -12.55256 -12.41751 -12.32104 -12.15028 -11.57609 -11.44851 -11.28671 -11.11745 -11.03149 -10.81064 -10.67350 -10.39606 -10.32070 -10.11946 -9.85280 -9.50788 -9.30806 -8.90986 -8.86346 -8.83494 -8.45685 -7.79291 -6.29962 -4.33450 1.27057 1.41818 2.51098 3.07858 3.13665 3.15534 3.16853 3.28932 4.05455 4.15923 4.18665 4.26223 4.56983 4.66929 4.73129 4.92367 4.99034 5.02927 5.06286 5.15795 5.19391 5.22442 5.27513 5.38986 5.41402 5.44638 5.49566 5.59982 5.64002 5.68565 5.78790 5.80906 5.88149 5.92073 5.95033 6.02403 6.09895 6.17445 6.18671 6.27122 6.35555 6.47074 6.52857 6.74134 6.95026 7.03999 7.06846 7.23981 7.61498 8.18027 8.22516 8.34141 8.79409 9.23914 10.82600 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.004347 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.397513 B = 6439.883361 C = 9229.036156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.117 4.117 4 C -0.002 4.002 5 N -0.467 5.467 6 C 0.106 3.894 7 C -0.235 4.235 8 C 0.054 3.946 9 N -0.317 5.317 10 C 0.230 3.770 11 C -0.537 4.537 12 H 0.086 0.914 13 C 0.079 3.921 14 N -0.884 5.884 15 Si 0.872 3.128 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 N -0.250 5.250 20 C 0.086 3.914 21 C 0.048 3.952 22 C -0.151 4.151 23 C 0.089 3.911 24 N -0.493 5.493 25 C 0.087 3.913 26 C -0.156 4.156 27 C 0.011 3.989 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.164 0.836 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.269 0.731 42 H 0.135 0.865 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.169 0.831 46 H 0.083 0.917 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 -13.278 14.701 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.136 4.136 4 C -0.131 4.131 5 N -0.189 5.189 6 C -0.023 4.023 7 C -0.248 4.248 8 C -0.095 4.095 9 N -0.096 5.096 10 C 0.111 3.889 11 C -0.575 4.575 12 H 0.104 0.896 13 C -0.126 4.126 14 N -0.521 5.521 15 Si 0.698 3.302 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.189 1.189 19 N -0.074 5.074 20 C -0.077 4.077 21 C 0.038 3.962 22 C -0.173 4.173 23 C -0.068 4.068 24 N -0.203 5.203 25 C -0.069 4.069 26 C -0.177 4.177 27 C -0.118 4.118 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.182 0.818 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.153 0.847 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.186 0.814 46 H 0.102 0.898 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.596 -10.928 14.511 19.326 hybrid contribution -0.187 -2.344 -1.802 2.962 sum 6.409 -13.273 12.710 19.462 Atomic orbital electron populations 1.21751 0.95612 1.01403 1.02147 1.21470 0.96217 0.95541 1.01820 1.22821 0.95788 0.96757 0.98233 1.23888 0.96387 0.94259 0.98574 1.68801 1.03468 1.36684 1.09930 1.20763 0.95125 0.95570 0.90860 1.19481 1.15392 0.93954 0.95931 1.22182 1.01842 0.92947 0.92526 1.48950 1.44431 1.03394 1.12868 1.20097 0.96193 0.99301 0.73311 1.21061 1.17719 1.21263 0.97488 0.89589 1.24818 0.94459 0.94808 0.98486 1.69868 1.24179 1.31314 1.26736 0.86926 0.79604 0.80221 0.83452 1.19699 1.20395 1.18927 1.77727 1.16598 1.11523 1.01557 1.20310 1.02404 0.92041 0.92965 1.18176 0.93848 0.93055 0.91080 1.22277 0.98073 0.95890 1.01013 1.22558 0.98126 0.98618 0.87463 1.67560 1.13304 1.15276 1.24152 1.22609 0.93560 0.91437 0.99325 1.22931 1.00923 1.02139 0.91690 1.23815 0.94497 0.97700 0.95801 0.92997 0.92709 0.92432 0.92033 0.91834 0.88145 0.91503 0.89883 0.93765 0.90325 0.81846 0.93852 0.93480 0.92072 0.84689 0.83025 0.83078 0.81398 0.89828 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 37.16 0.37 -0.78 16 2 C -0.11 -0.84 5.85 -26.73 -0.16 -0.99 16 3 C -0.12 -1.02 3.98 -90.09 -0.36 -1.38 16 4 C 0.00 -0.02 7.29 -7.55 -0.06 -0.07 16 5 N -0.47 -5.40 4.01 -246.09 -0.99 -6.39 16 6 C 0.11 1.31 4.25 -4.98 -0.02 1.29 16 7 C -0.23 -3.84 5.23 -104.75 -0.55 -4.39 16 8 C 0.05 0.94 11.33 -17.26 -0.20 0.75 16 9 N -0.32 -6.78 3.67 -62.58 -0.23 -7.01 16 10 C 0.23 5.25 5.33 -5.19 -0.03 5.23 16 11 C -0.54 -14.88 9.78 -34.44 -0.34 -15.21 16 12 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.88 -26.23 13.96 55.43 0.77 -25.45 16 15 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 19 N -0.25 -5.59 12.42 33.43 0.42 -5.17 16 20 C 0.09 1.63 6.78 -82.78 -0.56 1.07 16 21 C 0.05 0.82 5.83 -104.58 -0.61 0.21 16 22 C -0.15 -2.38 9.87 -39.11 -0.39 -2.77 16 23 C 0.09 1.25 11.17 -17.61 -0.20 1.06 16 24 N -0.49 -7.29 10.35 -13.35 -0.14 -7.43 16 25 C 0.09 1.18 11.17 -17.61 -0.20 0.98 16 26 C -0.16 -2.28 8.89 -39.11 -0.35 -2.63 16 27 C 0.01 0.12 6.88 -7.55 -0.05 0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.07 0.53 7.73 -51.93 -0.40 0.12 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.48 7.56 -51.93 -0.39 0.09 16 37 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 38 H 0.16 2.24 8.06 -52.49 -0.42 1.81 16 39 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 40 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 43 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.17 2.34 4.86 -52.49 -0.26 2.08 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.07 0.72 7.45 -51.93 -0.39 0.33 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -31.68 385.10 -10.06 -41.74 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.25 Total: 4.36 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.78 Total: -15.50 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.17 Total: -51.45 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.68 -10.06 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520735963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.518 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds