Wall clock time and date at job start Tue Mar 31 2020 15:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46929 * 2 1 4 4 C 1.53508 * 114.17023 * 174.99909 * 3 2 1 5 5 N 1.47482 * 87.93677 * 139.86029 * 4 3 2 6 6 C 1.46898 * 111.00177 * 221.29753 * 5 4 3 7 7 C 1.50700 * 109.46992 * 169.99520 * 6 5 4 8 8 C 1.35068 * 126.07471 * 260.00005 * 7 6 5 9 9 N 1.35058 * 107.98520 * 179.97438 * 8 7 6 10 10 C 1.46502 * 125.92975 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46855 * 125.00135 * 10 9 8 12 12 H 1.07992 * 120.00229 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99501 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99818 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00276 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47150 * 90.00329 * 15 13 11 17 17 H 1.48504 * 109.47221 * 210.00451 * 15 13 11 18 18 H 1.48506 * 109.47124 * 330.00464 * 15 13 11 19 19 N 1.40068 * 108.14279 * 359.75463 * 9 8 7 20 20 C 1.31654 * 108.10207 * 0.41679 * 19 9 8 21 21 C 1.48369 * 126.04348 * 179.85433 * 20 19 9 22 22 C 1.39765 * 120.90260 * 324.69155 * 21 20 19 23 23 C 1.37965 * 119.02119 * 179.97438 * 22 21 20 24 24 N 1.31927 * 120.87852 * 0.02562 * 23 22 21 25 25 C 1.31939 * 122.00954 * 359.97438 * 24 23 22 26 26 C 1.37959 * 120.87633 * 0.02562 * 25 24 23 27 27 C 1.47488 * 87.82990 * 332.99039 * 5 4 3 28 28 H 1.09007 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47145 * 299.99965 * 1 2 3 30 30 H 1.09001 * 109.47133 * 60.00482 * 1 2 3 31 31 H 1.08997 * 109.47145 * 240.00035 * 2 1 3 32 32 H 1.09001 * 109.47133 * 119.99518 * 2 1 3 33 33 H 1.08994 * 113.25922 * 42.04709 * 3 2 1 34 34 H 1.09004 * 113.48001 * 25.09270 * 4 3 2 35 35 H 1.08998 * 113.53429 * 254.63458 * 4 3 2 36 36 H 1.09001 * 109.47120 * 50.00275 * 6 5 4 37 37 H 1.08992 * 109.47402 * 289.99628 * 6 5 4 38 38 H 1.08002 * 126.01078 * 0.02562 * 8 7 6 39 39 H 1.08993 * 109.47304 * 245.00281 * 10 9 8 40 40 H 1.09000 * 109.46787 * 5.00189 * 10 9 8 41 41 H 0.96998 * 119.99827 * 180.02562 * 14 13 11 42 42 H 1.08002 * 120.48777 * 0.24814 * 22 21 20 43 43 H 1.08001 * 119.55813 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.56199 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.49168 * 180.02562 * 26 25 24 46 46 H 1.09003 * 113.47461 * 141.77826 * 27 5 4 47 47 H 1.08997 * 113.47255 * 272.24048 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.5701 0.1221 5 7 3.4995 2.6604 -0.8689 6 6 4.6025 2.5615 -1.8340 7 6 4.3695 3.5308 -2.9642 8 6 3.8684 3.2278 -4.1813 9 7 3.8147 4.3666 -4.9054 10 6 3.3326 4.4870 -6.2836 11 6 2.2449 5.5282 -6.3461 12 1 1.9432 6.0484 -5.4491 13 6 1.6349 5.8165 -7.5485 14 7 0.6860 6.7255 -7.6031 15 14 2.1572 4.9171 -9.1002 16 1 1.3359 3.6905 -9.2615 17 1 1.9603 5.8029 -10.2758 18 1 3.5906 4.5430 -8.9967 19 7 4.2940 5.4136 -4.1080 20 6 4.6352 4.9140 -2.9387 21 6 5.1946 5.6745 -1.7941 22 6 6.0613 6.7510 -2.0024 23 6 6.5582 7.4313 -0.9099 24 7 6.2258 7.0773 0.3168 25 6 5.4111 6.0676 0.5568 26 6 4.8692 5.3338 -0.4781 27 6 2.2757 2.0303 -1.3984 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4823 2.0962 0.6707 34 1 4.1040 0.6920 -0.2334 35 1 3.8967 1.8980 1.1072 36 1 4.6493 1.5469 -2.2295 37 1 5.5425 2.8016 -1.3374 38 1 3.5634 2.2474 -4.5163 39 1 4.1568 4.7833 -6.9323 40 1 2.9363 3.5272 -6.6150 41 1 0.2566 6.9280 -8.4490 42 1 6.3344 7.0487 -3.0040 43 1 7.2289 8.2643 -1.0608 44 1 5.1659 5.8117 1.5769 45 1 4.2026 4.5087 -0.2745 46 1 1.5138 2.7485 -1.7016 47 1 2.4707 1.2750 -2.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520735963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:50 Heat of formation + Delta-G solvation = 126.121552 kcal Electronic energy + Delta-G solvation = -27333.729680 eV Core-core repulsion = 23711.375752 eV Total energy + Delta-G solvation = -3622.353928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33496 -40.91352 -40.68695 -36.01180 -34.86442 -34.39694 -32.86051 -32.33504 -31.83868 -30.00486 -28.51642 -26.75838 -25.66569 -25.42593 -24.27891 -23.53781 -22.51991 -21.54228 -20.70362 -20.42951 -19.14825 -18.06943 -17.22567 -17.02466 -16.88466 -16.51489 -16.27091 -16.18092 -15.81647 -15.51324 -15.04247 -14.84149 -14.75637 -14.58075 -14.35051 -14.21970 -14.00573 -13.66592 -13.61552 -13.39398 -13.22846 -12.93066 -12.60587 -12.55118 -12.24083 -12.12127 -12.07115 -11.85819 -11.74787 -11.52693 -11.39126 -11.04592 -11.00887 -10.91781 -10.46655 -10.05354 -9.92987 -9.70497 -9.19689 -8.42321 -6.53649 0.01088 0.27592 1.10725 1.31254 1.34675 1.44279 1.75081 1.85727 2.24085 2.89446 2.96498 3.25202 3.45072 3.53816 3.63721 3.73850 3.87212 4.06571 4.08257 4.19144 4.23992 4.30990 4.36586 4.42554 4.46293 4.53849 4.59391 4.60806 4.66508 4.72342 4.78957 4.88183 4.91120 4.95483 4.98585 5.02796 5.07433 5.09777 5.20248 5.22265 5.26235 5.40561 5.47590 5.52739 5.58051 5.71207 5.83075 5.92128 6.21440 6.33898 6.51895 6.86282 7.04009 7.09520 8.75047 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.004347 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.397513 B = 6439.883361 C = 9229.036156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.106 4.106 4 C 0.007 3.993 5 N -0.486 5.486 6 C 0.112 3.888 7 C -0.228 4.228 8 C 0.054 3.946 9 N -0.344 5.344 10 C 0.239 3.761 11 C -0.548 4.548 12 H 0.022 0.978 13 C 0.016 3.984 14 N -0.941 5.941 15 Si 0.956 3.044 16 H -0.251 1.251 17 H -0.280 1.280 18 H -0.240 1.240 19 N -0.314 5.314 20 C 0.084 3.916 21 C 0.022 3.978 22 C -0.166 4.166 23 C 0.093 3.907 24 N -0.502 5.502 25 C 0.093 3.907 26 C -0.153 4.153 27 C 0.005 3.995 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.202 0.798 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.273 0.727 42 H 0.126 0.874 43 H 0.180 0.820 44 H 0.187 0.813 45 H 0.176 0.824 46 H 0.049 0.951 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -16.528 15.781 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.125 4.125 4 C -0.121 4.121 5 N -0.208 5.208 6 C -0.016 4.016 7 C -0.240 4.240 8 C -0.094 4.094 9 N -0.124 5.124 10 C 0.119 3.881 11 C -0.586 4.586 12 H 0.040 0.960 13 C -0.183 4.183 14 N -0.580 5.580 15 Si 0.777 3.223 16 H -0.175 1.175 17 H -0.206 1.206 18 H -0.164 1.164 19 N -0.138 5.138 20 C -0.080 4.080 21 C 0.012 3.988 22 C -0.187 4.187 23 C -0.063 4.063 24 N -0.212 5.212 25 C -0.063 4.063 26 C -0.173 4.173 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.219 0.781 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.197 0.803 44 H 0.204 0.796 45 H 0.193 0.807 46 H 0.068 0.932 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.124 -14.198 15.633 22.627 hybrid contribution -0.688 -1.249 -1.932 2.402 sum 7.435 -15.447 13.701 21.945 Atomic orbital electron populations 1.21763 0.96026 1.01783 1.01496 1.21441 0.95802 0.94525 1.02720 1.22737 0.96202 0.97405 0.96158 1.23925 0.96176 0.93769 0.98231 1.68741 1.03157 1.38497 1.10397 1.20787 0.95561 0.95469 0.89817 1.19959 1.13676 0.93527 0.96845 1.22879 1.00922 0.93240 0.92366 1.48780 1.46347 1.04519 1.12783 1.19862 0.94422 0.98914 0.74913 1.21180 1.19511 1.22384 0.95572 0.95966 1.25935 0.93988 0.95581 1.02820 1.70056 1.26104 1.33710 1.28122 0.85609 0.80645 0.79018 0.77052 1.17482 1.20562 1.16354 1.77632 1.19279 1.13421 1.03511 1.20848 1.01067 0.93604 0.92472 1.18404 0.94988 0.93934 0.91480 1.22328 0.98791 0.96284 1.01307 1.22945 0.97819 0.98766 0.86787 1.67675 1.13715 1.15723 1.24121 1.23156 0.92226 0.90331 1.00574 1.23035 1.00911 1.02498 0.90900 1.23844 0.93745 0.97233 0.97562 0.92103 0.92623 0.93879 0.91683 0.90270 0.88747 0.89796 0.88686 0.91405 0.89903 0.78118 0.93814 0.90219 0.91807 0.85619 0.80295 0.79595 0.80674 0.93186 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.90 71.98 0.71 -1.36 16 2 C -0.11 -1.30 5.85 30.59 0.18 -1.12 16 3 C -0.11 -1.63 3.98 -10.45 -0.04 -1.67 16 4 C 0.01 0.10 7.29 83.57 0.61 0.71 16 5 N -0.49 -10.32 4.01 -932.50 -3.74 -14.06 16 6 C 0.11 2.54 4.25 85.56 0.36 2.90 16 7 C -0.23 -7.33 5.23 -19.95 -0.10 -7.44 16 8 C 0.05 1.81 11.33 83.47 0.95 2.76 16 9 N -0.34 -15.10 3.67 -351.91 -1.29 -16.39 16 10 C 0.24 11.00 5.33 85.63 0.46 11.46 16 11 C -0.55 -31.92 9.78 25.60 0.25 -31.67 16 12 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 13 C 0.02 0.90 5.47 84.65 0.46 1.36 16 14 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 15 Si 0.96 40.62 27.47 68.60 1.88 42.50 16 16 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 19 N -0.31 -14.86 12.42 -48.16 -0.60 -15.46 16 20 C 0.08 3.27 6.78 42.52 0.29 3.56 16 21 C 0.02 0.75 5.83 -19.84 -0.12 0.64 16 22 C -0.17 -5.35 9.87 22.57 0.22 -5.13 16 23 C 0.09 2.55 11.17 84.61 0.95 3.50 16 24 N -0.50 -14.00 10.35 -196.14 -2.03 -16.03 16 25 C 0.09 2.34 11.17 84.61 0.95 3.28 16 26 C -0.15 -4.32 8.89 22.58 0.20 -4.12 16 27 C 0.01 0.11 6.88 83.57 0.58 0.68 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.77 7.82 -2.39 -0.02 0.75 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 1.58 8.12 -2.39 -0.02 1.56 16 34 H 0.08 0.95 7.73 -2.38 -0.02 0.93 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.22 7.56 -2.39 -0.02 1.20 16 37 H 0.08 1.83 7.79 -2.39 -0.02 1.81 16 38 H 0.20 4.97 8.06 -2.91 -0.02 4.95 16 39 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16 40 H 0.08 3.13 7.50 -2.39 -0.02 3.11 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 45 H 0.18 4.66 4.86 -2.91 -0.01 4.64 16 46 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.47 7.45 -2.39 -0.02 1.45 16 Total: -1.00 -75.30 385.10 2.32 -72.98 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.90 Total: 26.29 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 6.89 Total: -21.66 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -7.36 Total: -120.11 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.88 Total: 42.50 kcal Total: -75.30 2.32 -72.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520735963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.099 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds