Wall clock time and date at job start Tue Mar 31 2020 14:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 116.99969 * 2 1 4 4 C 1.38658 * 120.06263 * 359.72210 * 3 2 1 5 5 C 1.38181 * 119.97294 * 180.27949 * 4 3 2 6 6 C 1.38262 * 120.09201 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.93720 * 180.02562 * 6 5 4 8 8 N 1.46908 * 109.47220 * 270.01948 * 7 6 5 9 9 C 1.46895 * 111.00295 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47448 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47268 * 305.00393 * 10 9 8 12 12 O 1.42901 * 109.46846 * 65.00162 * 10 9 8 13 13 C 1.53002 * 109.47474 * 184.99937 * 10 9 8 14 14 N 1.46897 * 109.47198 * 178.50814 * 13 10 9 15 15 C 1.46905 * 110.99927 * 164.01156 * 14 13 10 16 16 C 1.46895 * 111.00495 * 287.96819 * 14 13 10 17 17 C 1.50703 * 109.47509 * 169.99927 * 16 14 13 18 18 H 1.07998 * 119.99934 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00063 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99941 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00140 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47175 * 90.00070 * 21 19 17 23 23 H 1.48492 * 109.47097 * 210.00514 * 21 19 17 24 24 H 1.48500 * 109.46818 * 330.00250 * 21 19 17 25 25 C 1.38256 * 120.12931 * 0.04503 * 6 5 4 26 26 C 1.38337 * 120.02569 * 359.95402 * 25 6 5 27 27 F 1.35099 * 120.04529 * 179.97438 * 26 25 6 28 28 H 1.08998 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47233 * 300.00308 * 1 2 3 30 30 H 1.08995 * 109.47383 * 59.99853 * 1 2 3 31 31 H 1.08004 * 120.01935 * 0.25545 * 4 3 2 32 32 H 1.07998 * 119.95504 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47230 * 30.01678 * 7 6 5 34 34 H 1.08997 * 109.47546 * 150.02462 * 7 6 5 35 35 H 1.00900 * 110.99853 * 303.95629 * 8 7 6 36 36 H 1.09004 * 109.47220 * 300.00424 * 9 8 7 37 37 H 1.09004 * 109.46798 * 60.00065 * 9 8 7 38 38 H 0.96704 * 114.00480 * 60.00351 * 12 10 9 39 39 H 1.08991 * 109.47136 * 298.51096 * 13 10 9 40 40 H 1.09003 * 109.47015 * 58.51144 * 13 10 9 41 41 H 1.09000 * 109.46854 * 65.48907 * 15 14 13 42 42 H 1.09002 * 109.46831 * 185.48588 * 15 14 13 43 43 H 1.08993 * 109.46914 * 305.48466 * 15 14 13 44 44 H 1.09002 * 109.47166 * 290.00097 * 16 14 13 45 45 H 1.09003 * 109.47039 * 50.00059 * 16 14 13 46 46 H 0.97000 * 119.99915 * 179.97438 * 20 19 17 47 47 H 1.07993 * 119.98842 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9216 3.6053 -0.0116 6 6 3.3023 3.6777 -0.0112 7 6 3.9849 5.0212 -0.0169 8 7 4.2072 5.4516 -1.4039 9 6 4.8718 6.7608 -1.4487 10 6 5.0852 7.1748 -2.9061 11 1 5.6326 6.3913 -3.4299 12 8 3.8176 7.3726 -3.5355 13 6 5.8872 8.4769 -2.9542 14 7 6.1227 8.8554 -4.3539 15 6 6.5438 10.2592 -4.4559 16 6 7.1067 7.9638 -4.9821 17 6 7.1417 8.2206 -6.4667 18 1 6.4977 8.9714 -6.9001 19 6 7.9958 7.4969 -7.2715 20 7 8.0267 7.7214 -8.5670 21 14 9.1102 6.1987 -6.5217 22 1 8.4091 4.8897 -6.5129 23 1 10.3534 6.0890 -7.3262 24 1 9.4539 6.5855 -5.1298 25 6 4.0579 2.5199 -0.0058 26 6 3.4333 1.2856 0.0001 27 9 4.1713 0.1540 0.0049 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2137 2.3201 -0.0062 32 1 1.3341 4.5115 -0.0166 33 1 3.3559 5.7505 0.4934 34 1 4.9428 4.9443 0.4974 35 1 4.7338 4.7606 -1.9169 36 1 4.2486 7.5020 -0.9483 37 1 5.8358 6.6963 -0.9441 38 1 3.2751 8.0574 -3.1209 39 1 5.3278 9.2669 -2.4534 40 1 6.8433 8.3336 -2.4508 41 1 7.5155 10.3826 -3.9779 42 1 6.6171 10.5410 -5.5063 43 1 5.8111 10.8952 -3.9594 44 1 8.0924 8.1535 -4.5572 45 1 6.8258 6.9265 -4.7993 46 1 8.6279 7.2126 -9.1332 47 1 5.1363 2.5791 -0.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560870740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:53 Heat of formation + Delta-G solvation = -93.353329 kcal Electronic energy + Delta-G solvation = -27105.493043 eV Core-core repulsion = 23010.559994 eV Total energy + Delta-G solvation = -4094.933049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.00498 -40.40173 -38.58286 -37.96050 -36.00553 -34.89354 -32.41606 -31.45118 -31.05625 -29.52564 -28.11870 -27.81840 -26.15599 -24.38292 -23.13311 -22.97351 -21.76674 -21.41010 -19.94096 -18.67341 -17.32768 -17.24216 -16.91731 -16.48495 -16.28467 -15.70534 -15.36263 -15.29130 -15.08005 -14.82638 -14.74916 -14.58646 -14.44681 -14.15628 -13.71807 -13.28987 -13.06645 -12.97041 -12.67505 -12.50748 -12.36686 -12.27744 -11.88558 -11.71085 -11.54696 -11.48086 -11.42298 -11.27988 -11.07632 -10.77780 -10.49929 -10.18136 -9.87815 -9.56872 -9.28175 -9.19470 -8.62213 -8.53492 -8.39701 -7.33475 -6.01966 -3.98564 0.80364 0.86712 2.75272 3.15730 3.29627 3.36721 3.36799 3.87581 4.03469 4.30993 4.40408 4.43847 4.55670 4.67872 4.72671 4.80572 4.84247 4.88674 5.03642 5.10389 5.11612 5.15749 5.28126 5.34084 5.38101 5.49341 5.54910 5.58984 5.61362 5.72738 5.79375 5.90752 6.02985 6.17244 6.24028 6.27471 6.35304 6.65699 6.79044 6.85499 6.89928 6.97819 7.18245 7.61558 7.89106 8.04602 8.18723 8.69129 9.07413 9.59686 11.11382 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002367 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.046687 B =11824.445319 C =12879.731567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.094 3.906 4 C -0.182 4.182 5 C -0.064 4.064 6 C -0.089 4.089 7 C 0.101 3.899 8 N -0.675 5.675 9 C 0.027 3.973 10 C 0.117 3.883 11 H 0.097 0.903 12 O -0.529 6.529 13 C 0.023 3.977 14 N -0.521 5.521 15 C 0.039 3.961 16 C 0.162 3.838 17 C -0.505 4.505 18 H 0.081 0.919 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.270 1.270 25 C -0.110 4.110 26 C 0.068 3.932 27 F -0.133 7.133 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.346 0.654 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.362 0.638 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.010 0.990 42 H 0.079 0.921 43 H 0.046 0.954 44 H -0.015 1.015 45 H 0.024 0.976 46 H 0.263 0.737 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.912 -9.290 23.803 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.048 3.952 4 C -0.201 4.201 5 C -0.082 4.082 6 C -0.090 4.090 7 C -0.027 4.027 8 N -0.306 5.306 9 C -0.102 4.102 10 C 0.056 3.944 11 H 0.115 0.885 12 O -0.331 6.331 13 C -0.107 4.107 14 N -0.244 5.244 15 C -0.109 4.109 16 C 0.036 3.964 17 C -0.543 4.543 18 H 0.099 0.901 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.701 3.299 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.195 1.195 25 C -0.129 4.129 26 C 0.048 3.952 27 F -0.112 7.112 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.164 0.836 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.207 0.793 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.003 0.997 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.552 -9.839 22.906 28.866 hybrid contribution 2.119 -0.591 1.369 2.591 sum -12.433 -10.430 24.275 29.200 Atomic orbital electron populations 1.23126 0.77833 1.04310 1.01602 1.86135 1.21811 1.25857 1.88693 1.19024 0.90814 0.85694 0.99700 1.21155 1.00346 0.91429 1.07173 1.20904 0.93834 0.97289 0.96211 1.19528 0.93576 0.94173 1.01677 1.20842 0.98601 0.92566 0.90738 1.60411 1.54067 1.04412 1.11724 1.22753 0.97068 0.91734 0.98688 1.21860 0.85595 0.96738 0.90179 0.88492 1.86708 1.28009 1.60392 1.58003 1.22744 0.98508 0.97397 0.92058 1.61849 1.47778 1.03008 1.11814 1.22232 0.96537 0.89186 1.02967 1.20224 0.87908 0.92190 0.96114 1.21017 1.22163 1.21779 0.89375 0.90105 1.24900 0.96868 0.96898 0.94727 1.69892 1.38633 1.41666 1.03790 0.86894 0.80740 0.82824 0.79489 1.20044 1.21201 1.19465 1.20927 1.00946 0.89914 1.01136 1.16907 0.85963 0.82949 1.09347 1.91504 1.76391 1.48999 1.94307 0.87949 0.92440 0.92232 0.84405 0.84706 0.89866 0.94303 0.83590 0.90652 0.94583 0.79277 0.91614 0.95315 0.97134 0.90197 0.93523 0.99716 0.95827 0.92706 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.19 10.36 -19.60 -0.20 -3.39 16 3 C 0.09 0.99 6.69 -39.18 -0.26 0.72 16 4 C -0.18 -1.53 9.04 -39.45 -0.36 -1.89 16 5 C -0.06 -0.54 9.69 -39.59 -0.38 -0.92 16 6 C -0.09 -0.81 5.39 -104.61 -0.56 -1.38 16 7 C 0.10 0.87 5.81 -4.97 -0.03 0.84 16 8 N -0.67 -7.34 6.44 -115.06 -0.74 -8.08 16 9 C 0.03 0.30 5.32 -3.83 -0.02 0.28 16 10 C 0.12 1.74 3.17 -26.73 -0.08 1.66 16 11 H 0.10 1.70 6.55 -51.93 -0.34 1.36 16 12 O -0.53 -8.65 13.18 -35.23 -0.46 -9.12 16 13 C 0.02 0.36 4.63 -3.82 -0.02 0.34 16 14 N -0.52 -10.83 4.60 -244.37 -1.12 -11.95 16 15 C 0.04 0.74 9.33 60.07 0.56 1.30 16 16 C 0.16 3.96 3.64 -4.98 -0.02 3.94 16 17 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 16 18 H 0.08 2.55 7.34 -52.49 -0.39 2.16 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 21 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 25 C -0.11 -1.08 9.67 -39.54 -0.38 -1.47 16 26 C 0.07 0.78 7.31 -39.30 -0.29 0.49 16 27 F -0.13 -1.71 17.11 2.25 0.04 -1.68 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 31 H 0.14 0.81 6.30 -52.48 -0.33 0.48 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.35 4.01 8.72 -39.29 -0.34 3.67 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.36 4.50 9.05 45.56 0.41 4.91 16 39 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 40 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 41 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 42 H 0.08 1.69 6.90 -51.93 -0.36 1.34 16 43 H 0.05 0.73 7.97 -51.93 -0.41 0.32 16 44 H -0.01 -0.36 7.17 -51.93 -0.37 -0.74 16 45 H 0.02 0.58 5.81 -51.93 -0.30 0.28 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -34.45 388.15 -8.40 -42.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.60 Total: 3.59 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.26 Total: -7.96 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -1.09 Total: -47.24 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.67 Total: -12.51 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.45 -8.40 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560870740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.496 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds