Wall clock time and date at job start Tue Mar 31 2020 14:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 116.99969 * 2 1 4 4 C 1.38658 * 120.06263 * 359.72210 * 3 2 1 5 5 C 1.38181 * 119.97294 * 180.27949 * 4 3 2 6 6 C 1.38262 * 120.09201 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.93720 * 180.02562 * 6 5 4 8 8 N 1.46908 * 109.47220 * 270.01948 * 7 6 5 9 9 C 1.46895 * 111.00295 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47448 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47268 * 305.00393 * 10 9 8 12 12 O 1.42901 * 109.46846 * 65.00162 * 10 9 8 13 13 C 1.53002 * 109.47474 * 184.99937 * 10 9 8 14 14 N 1.46897 * 109.47198 * 178.50814 * 13 10 9 15 15 C 1.46905 * 110.99927 * 164.01156 * 14 13 10 16 16 C 1.46895 * 111.00495 * 287.96819 * 14 13 10 17 17 C 1.50703 * 109.47509 * 169.99927 * 16 14 13 18 18 H 1.07998 * 119.99934 * 0.02562 * 17 16 14 19 19 C 1.37873 * 120.00063 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99941 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00140 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47175 * 90.00070 * 21 19 17 23 23 H 1.48492 * 109.47097 * 210.00514 * 21 19 17 24 24 H 1.48500 * 109.46818 * 330.00250 * 21 19 17 25 25 C 1.38256 * 120.12931 * 0.04503 * 6 5 4 26 26 C 1.38337 * 120.02569 * 359.95402 * 25 6 5 27 27 F 1.35099 * 120.04529 * 179.97438 * 26 25 6 28 28 H 1.08998 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47233 * 300.00308 * 1 2 3 30 30 H 1.08995 * 109.47383 * 59.99853 * 1 2 3 31 31 H 1.08004 * 120.01935 * 0.25545 * 4 3 2 32 32 H 1.07998 * 119.95504 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47230 * 30.01678 * 7 6 5 34 34 H 1.08997 * 109.47546 * 150.02462 * 7 6 5 35 35 H 1.00900 * 110.99853 * 303.95629 * 8 7 6 36 36 H 1.09004 * 109.47220 * 300.00424 * 9 8 7 37 37 H 1.09004 * 109.46798 * 60.00065 * 9 8 7 38 38 H 0.96704 * 114.00480 * 60.00351 * 12 10 9 39 39 H 1.08991 * 109.47136 * 298.51096 * 13 10 9 40 40 H 1.09003 * 109.47015 * 58.51144 * 13 10 9 41 41 H 1.09000 * 109.46854 * 65.48907 * 15 14 13 42 42 H 1.09002 * 109.46831 * 185.48588 * 15 14 13 43 43 H 1.08993 * 109.46914 * 305.48466 * 15 14 13 44 44 H 1.09002 * 109.47166 * 290.00097 * 16 14 13 45 45 H 1.09003 * 109.47039 * 50.00059 * 16 14 13 46 46 H 0.97000 * 119.99915 * 179.97438 * 20 19 17 47 47 H 1.07993 * 119.98842 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9216 3.6053 -0.0116 6 6 3.3023 3.6777 -0.0112 7 6 3.9849 5.0212 -0.0169 8 7 4.2072 5.4516 -1.4039 9 6 4.8718 6.7608 -1.4487 10 6 5.0852 7.1748 -2.9061 11 1 5.6326 6.3913 -3.4299 12 8 3.8176 7.3726 -3.5355 13 6 5.8872 8.4769 -2.9542 14 7 6.1227 8.8554 -4.3539 15 6 6.5438 10.2592 -4.4559 16 6 7.1067 7.9638 -4.9821 17 6 7.1417 8.2206 -6.4667 18 1 6.4977 8.9714 -6.9001 19 6 7.9958 7.4969 -7.2715 20 7 8.0267 7.7214 -8.5670 21 14 9.1102 6.1987 -6.5217 22 1 8.4091 4.8897 -6.5129 23 1 10.3534 6.0890 -7.3262 24 1 9.4539 6.5855 -5.1298 25 6 4.0579 2.5199 -0.0058 26 6 3.4333 1.2856 0.0001 27 9 4.1713 0.1540 0.0049 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2137 2.3201 -0.0062 32 1 1.3341 4.5115 -0.0166 33 1 3.3559 5.7505 0.4934 34 1 4.9428 4.9443 0.4974 35 1 4.7338 4.7606 -1.9169 36 1 4.2486 7.5020 -0.9483 37 1 5.8358 6.6963 -0.9441 38 1 3.2751 8.0574 -3.1209 39 1 5.3278 9.2669 -2.4534 40 1 6.8433 8.3336 -2.4508 41 1 7.5155 10.3826 -3.9779 42 1 6.6171 10.5410 -5.5063 43 1 5.8111 10.8952 -3.9594 44 1 8.0924 8.1535 -4.5572 45 1 6.8258 6.9265 -4.7993 46 1 8.6279 7.2126 -9.1332 47 1 5.1363 2.5791 -0.0058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560870740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:52 Heat of formation + Delta-G solvation = -121.551389 kcal Electronic energy + Delta-G solvation = -27106.715802 eV Core-core repulsion = 23010.559994 eV Total energy + Delta-G solvation = -4096.155808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.87238 -41.06406 -39.60478 -38.87082 -37.31613 -35.89930 -34.58399 -32.29121 -31.73878 -30.70639 -29.83447 -28.54301 -27.16925 -25.61162 -24.39412 -23.80831 -22.79659 -22.27990 -21.52722 -19.34004 -19.05274 -18.10803 -17.96185 -17.36603 -17.19071 -16.90067 -16.52397 -16.24729 -16.08451 -15.91460 -15.79047 -15.59751 -15.35124 -15.16342 -15.10036 -14.67771 -14.42352 -14.19250 -13.93105 -13.44215 -13.26531 -13.15372 -13.03640 -12.93606 -12.62187 -12.57048 -12.42121 -12.32913 -12.24577 -12.07541 -12.00739 -11.86978 -11.63081 -11.41889 -10.77639 -10.65442 -9.97281 -9.37528 -9.12863 -8.93059 -8.28319 -6.30857 0.10949 0.16320 1.32098 1.33965 1.43535 2.18096 2.33053 2.45597 3.02331 3.06606 3.19329 3.48391 3.67681 3.74371 3.83610 3.95830 4.03432 4.21950 4.22592 4.35243 4.37174 4.37809 4.45494 4.48672 4.52394 4.58383 4.63994 4.69825 4.72379 4.76532 4.80436 4.89848 4.91608 5.01614 5.04442 5.14611 5.20491 5.24360 5.50097 5.55872 5.63323 5.97835 6.06548 6.26730 6.33398 6.40525 6.68223 6.75628 7.19317 7.32199 8.88610 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.002367 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.046687 B =11824.445319 C =12879.731567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.083 3.917 4 C -0.179 4.179 5 C -0.062 4.062 6 C -0.094 4.094 7 C 0.106 3.894 8 N -0.687 5.687 9 C 0.042 3.958 10 C 0.119 3.881 11 H 0.064 0.936 12 O -0.555 6.555 13 C 0.024 3.976 14 N -0.543 5.543 15 C 0.042 3.958 16 C 0.174 3.826 17 C -0.514 4.514 18 H 0.036 0.964 19 C 0.005 3.995 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.249 1.249 25 C -0.113 4.113 26 C 0.033 3.967 27 F -0.151 7.151 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.338 0.662 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.379 0.621 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.017 0.983 42 H 0.042 0.958 43 H 0.084 0.916 44 H -0.015 1.015 45 H 0.024 0.976 46 H 0.266 0.734 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 -9.103 26.793 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.036 3.964 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.095 4.095 7 C -0.022 4.022 8 N -0.318 5.318 9 C -0.088 4.088 10 C 0.059 3.941 11 H 0.082 0.918 12 O -0.361 6.361 13 C -0.105 4.105 14 N -0.266 5.266 15 C -0.106 4.106 16 C 0.047 3.953 17 C -0.552 4.552 18 H 0.054 0.946 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.173 1.173 25 C -0.132 4.132 26 C 0.013 3.987 27 F -0.130 7.130 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.174 0.826 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.155 0.845 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.226 0.774 39 H 0.118 0.882 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.003 0.997 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.400 -9.630 25.935 31.663 hybrid contribution 2.216 -0.568 0.409 2.323 sum -13.185 -10.197 26.344 31.174 Atomic orbital electron populations 1.23430 0.75654 1.05846 1.02798 1.86102 1.24194 1.26172 1.88724 1.19247 0.90741 0.86562 0.99803 1.21453 1.01588 0.90648 1.06099 1.21231 0.93799 0.98087 0.94941 1.19677 0.94021 0.94156 1.01645 1.20871 0.99329 0.92426 0.89564 1.60422 1.53990 1.04266 1.13081 1.22566 0.98241 0.92279 0.95710 1.21770 0.84703 0.95344 0.92284 0.91810 1.86661 1.28756 1.61357 1.59285 1.22872 0.99555 0.98969 0.89101 1.61715 1.46536 1.03123 1.15257 1.22192 0.98204 0.88975 1.01210 1.19931 0.88938 0.93102 0.93354 1.21289 1.21177 1.20547 0.92176 0.94578 1.25870 0.98734 0.99528 0.95084 1.70055 1.40029 1.43347 1.05573 0.85741 0.78387 0.79506 0.79475 1.19221 1.20609 1.17311 1.21066 1.01489 0.89769 1.00888 1.17320 0.86770 0.83015 1.11575 1.91445 1.76872 1.49949 1.94696 0.86436 0.90789 0.91357 0.81807 0.82606 0.88147 0.93424 0.84479 0.88340 0.93501 0.77361 0.88248 0.94409 0.96424 0.93857 0.89771 0.99738 0.95767 0.92495 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.79 10.36 -93.06 -0.96 -7.76 16 3 C 0.08 1.69 6.69 22.53 0.15 1.85 16 4 C -0.18 -2.66 9.04 22.36 0.20 -2.45 16 5 C -0.06 -0.89 9.69 22.26 0.22 -0.68 16 6 C -0.09 -1.54 5.39 -19.86 -0.11 -1.64 16 7 C 0.11 1.49 5.81 85.55 0.50 1.99 16 8 N -0.69 -13.13 6.44 -517.94 -3.33 -16.46 16 9 C 0.04 0.77 5.32 86.30 0.46 1.23 16 10 C 0.12 3.30 3.17 30.59 0.10 3.40 16 11 H 0.06 2.19 6.55 -2.39 -0.02 2.17 16 12 O -0.56 -17.19 13.18 -148.98 -1.96 -19.15 16 13 C 0.02 0.68 4.63 86.30 0.40 1.08 16 14 N -0.54 -21.96 4.60 -927.06 -4.27 -26.22 16 15 C 0.04 1.56 9.33 127.69 1.19 2.75 16 16 C 0.17 8.45 3.64 85.56 0.31 8.76 16 17 C -0.51 -30.56 9.09 25.60 0.23 -30.33 16 18 H 0.04 2.40 7.34 -2.91 -0.02 2.38 16 19 C 0.00 0.28 5.47 84.65 0.46 0.75 16 20 N -0.95 -60.81 13.96 21.45 0.30 -60.52 16 21 Si 0.95 45.05 27.47 68.60 1.88 46.94 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 25 C -0.11 -2.16 9.67 22.30 0.22 -1.95 16 26 C 0.03 0.76 7.31 22.45 0.16 0.92 16 27 F -0.15 -4.06 17.11 44.97 0.77 -3.29 16 28 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.45 7.67 -2.39 -0.02 0.43 16 30 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 31 H 0.16 1.43 6.30 -2.91 -0.02 1.42 16 32 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.05 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.34 7.33 8.72 -89.69 -0.78 6.55 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.38 8.41 9.05 -74.05 -0.67 7.74 16 39 H 0.10 2.20 7.87 -2.39 -0.02 2.18 16 40 H 0.04 1.05 8.05 -2.39 -0.02 1.03 16 41 H 0.02 0.61 8.13 -2.39 -0.02 0.59 16 42 H 0.04 1.88 6.90 -2.39 -0.02 1.87 16 43 H 0.08 2.43 7.97 -2.39 -0.02 2.41 16 44 H -0.01 -0.72 7.17 -2.39 -0.02 -0.74 16 45 H 0.02 1.18 5.81 -2.39 -0.01 1.17 16 46 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 47 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -78.06 388.15 -2.49 -80.55 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.52 Total: 18.96 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 5.60 Total: -13.05 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -7.30 Total: -103.20 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -2.93 Total: -26.91 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.77 Total: -3.29 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Total: -78.06 -2.49 -80.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560870740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.003 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds