Wall clock time and date at job start Tue Mar 31 2020 14:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35959 * 117.00256 * 2 1 4 4 C 1.38660 * 120.06028 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.96707 * 179.70570 * 4 3 2 6 6 C 1.38269 * 120.09665 * 0.55132 * 5 4 3 7 7 C 1.50692 * 119.93784 * 179.72400 * 6 5 4 8 8 N 1.46898 * 109.47322 * 269.72421 * 7 6 5 9 9 C 1.46900 * 110.99985 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46945 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47076 * 60.00021 * 10 9 8 12 12 O 1.42901 * 109.46988 * 300.00078 * 10 9 8 13 13 C 1.53001 * 109.47020 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47094 * 180.46532 * 13 10 9 15 15 C 1.46897 * 111.00257 * 199.84917 * 14 13 10 16 16 C 1.46903 * 111.00263 * 75.89387 * 14 13 10 17 17 C 1.50698 * 109.47127 * 190.00388 * 16 14 13 18 18 H 1.08006 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00036 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47085 * 90.00257 * 21 19 17 23 23 H 1.48503 * 109.47165 * 210.00334 * 21 19 17 24 24 H 1.48503 * 109.47302 * 330.00281 * 21 19 17 25 25 C 1.38263 * 120.12140 * 359.44676 * 6 5 4 26 26 C 1.38332 * 120.02960 * 0.28095 * 25 6 5 27 27 F 1.35103 * 120.04550 * 179.97438 * 26 25 6 28 28 H 1.08994 * 109.47139 * 300.00489 * 1 2 3 29 29 H 1.09006 * 109.46708 * 60.00424 * 1 2 3 30 30 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.01909 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.95545 * 180.29642 * 5 4 3 33 33 H 1.09001 * 109.47271 * 149.72400 * 7 6 5 34 34 H 1.09003 * 109.47521 * 29.73084 * 7 6 5 35 35 H 1.00903 * 110.99864 * 56.04502 * 8 7 6 36 36 H 1.08998 * 109.47445 * 299.99997 * 9 8 7 37 37 H 1.09001 * 109.47216 * 60.00183 * 9 8 7 38 38 H 0.96701 * 114.00160 * 299.99950 * 12 10 9 39 39 H 1.09001 * 109.47110 * 300.46064 * 13 10 9 40 40 H 1.08994 * 109.47309 * 60.45921 * 13 10 9 41 41 H 1.08998 * 109.47057 * 64.81426 * 15 14 13 42 42 H 1.08998 * 109.47318 * 184.81746 * 15 14 13 43 43 H 1.09005 * 109.46716 * 304.82181 * 15 14 13 44 44 H 1.09007 * 109.46775 * 310.00046 * 16 14 13 45 45 H 1.08996 * 109.47473 * 69.99941 * 16 14 13 46 46 H 0.96999 * 119.99906 * 179.97438 * 20 19 17 47 47 H 1.08004 * 119.98154 * 180.25026 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3025 3.6777 0.0008 7 6 3.9851 5.0211 0.0012 8 7 4.2068 5.4582 -1.3836 9 6 4.8725 6.7671 -1.4223 10 6 5.0853 7.1882 -2.8778 11 1 4.1208 7.2561 -3.3811 12 8 5.9008 6.2192 -3.5396 13 6 5.7792 8.5512 -2.9181 14 7 5.9735 8.9606 -4.3154 15 6 7.0183 9.9877 -4.4228 16 6 4.7129 9.4282 -4.9072 17 6 4.8906 9.6050 -6.3932 18 1 5.8448 9.3917 -6.8521 19 6 3.8351 10.0389 -7.1670 20 7 2.6731 10.2981 -6.6082 21 14 4.0556 10.2587 -9.0088 22 1 3.7190 8.9896 -9.7025 23 1 3.1572 11.3390 -9.4895 24 1 5.4660 10.6222 -9.2986 25 6 4.0580 2.5197 0.0003 26 6 3.4334 1.2855 -0.0002 27 9 4.1713 0.1538 -0.0012 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2138 2.3201 0.0005 32 1 1.3344 4.5114 0.0119 33 1 4.9432 4.9417 0.5149 34 1 3.3564 5.7480 0.5155 35 1 3.3400 5.4776 -1.8998 36 1 4.2503 7.5064 -0.9178 37 1 5.8368 6.6994 -0.9186 38 1 6.7761 6.1059 -3.1445 39 1 5.1614 9.2888 -2.4060 40 1 6.7472 8.4809 -2.4221 41 1 7.9763 9.5642 -4.1213 42 1 7.0825 10.3342 -5.4542 43 1 6.7711 10.8267 -3.7722 44 1 3.9292 8.6941 -4.7198 45 1 4.4325 10.3813 -4.4589 46 1 1.9307 10.6038 -7.1525 47 1 5.1365 2.5789 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560870741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:56 Heat of formation + Delta-G solvation = -98.461596 kcal Electronic energy + Delta-G solvation = -26973.437173 eV Core-core repulsion = 22878.282613 eV Total energy + Delta-G solvation = -4095.154560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.95050 -40.36115 -38.49308 -37.84531 -35.87698 -34.77924 -32.46841 -31.37768 -31.01148 -29.40865 -27.93254 -27.27053 -26.08536 -24.38660 -23.15564 -23.03508 -21.66537 -21.36718 -20.00980 -18.63539 -17.33497 -17.04718 -16.49944 -16.43644 -16.32603 -15.53947 -15.30598 -15.24506 -15.06872 -14.74190 -14.66996 -14.52940 -14.24404 -14.10787 -13.57031 -13.31796 -13.25031 -12.71556 -12.59954 -12.41838 -12.23011 -11.96325 -11.77505 -11.72095 -11.40668 -11.38644 -11.35186 -11.11092 -10.88821 -10.67770 -10.60183 -10.33824 -9.75080 -9.49575 -9.20804 -9.10970 -8.57951 -8.40741 -8.32506 -7.18220 -6.00912 -4.00969 0.85544 0.90968 2.79169 3.20325 3.34722 3.40274 3.44032 3.93530 4.10707 4.34521 4.44138 4.46674 4.63768 4.75539 4.81095 4.84111 4.92994 4.97544 5.07600 5.16034 5.22360 5.29336 5.34712 5.38262 5.47606 5.59694 5.63879 5.71908 5.74293 5.77060 5.84079 6.04452 6.15153 6.20630 6.33054 6.33196 6.50214 6.74164 6.87203 6.93952 7.27478 7.29437 7.32553 7.82542 8.10395 8.20022 8.29842 8.57952 9.06430 9.62855 11.10281 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002138 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.938108 B =13096.138272 C =14059.438447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.093 3.907 4 C -0.181 4.181 5 C -0.082 4.082 6 C -0.088 4.088 7 C 0.101 3.899 8 N -0.674 5.674 9 C 0.027 3.973 10 C 0.119 3.881 11 H 0.099 0.901 12 O -0.530 6.530 13 C 0.026 3.974 14 N -0.530 5.530 15 C 0.038 3.962 16 C 0.193 3.807 17 C -0.503 4.503 18 H 0.064 0.936 19 C 0.054 3.946 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.091 4.091 26 C 0.068 3.932 27 F -0.133 7.133 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.346 0.654 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.361 0.639 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.007 0.993 44 H 0.030 0.970 45 H -0.012 1.012 46 H 0.260 0.740 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -15.036 19.206 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.047 3.953 4 C -0.200 4.200 5 C -0.101 4.101 6 C -0.088 4.088 7 C -0.028 4.028 8 N -0.305 5.305 9 C -0.103 4.103 10 C 0.058 3.942 11 H 0.117 0.883 12 O -0.332 6.332 13 C -0.104 4.104 14 N -0.254 5.254 15 C -0.111 4.111 16 C 0.068 3.932 17 C -0.542 4.542 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.111 4.111 26 C 0.048 3.952 27 F -0.112 7.112 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.165 0.835 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.206 0.794 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.025 0.975 44 H 0.048 0.952 45 H 0.005 0.995 46 H 0.070 0.930 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.058 -16.009 18.436 24.503 hybrid contribution -0.800 1.527 0.141 1.730 sum -2.858 -14.482 18.577 23.728 Atomic orbital electron populations 1.23121 0.77887 1.04282 1.01581 1.86133 1.21760 1.25878 1.88733 1.19024 0.90860 0.85628 0.99826 1.21094 1.00278 0.91389 1.07240 1.20943 0.93976 0.97379 0.97812 1.19539 0.92996 0.94772 1.01526 1.20841 0.99559 0.91501 0.90896 1.60394 1.29910 1.28654 1.11558 1.22747 0.99325 0.89291 0.98897 1.21846 0.95595 0.87087 0.89627 0.88344 1.86690 1.28757 1.60191 1.57555 1.22673 0.99133 0.96429 0.92149 1.62008 1.10748 1.39621 1.13066 1.22227 0.93950 0.92666 1.02247 1.19760 0.85316 0.93446 0.94701 1.21166 0.97600 1.43326 0.92063 0.91832 1.24987 0.95174 0.95695 0.98861 1.69956 1.01900 1.46551 1.35714 0.86493 0.77932 0.77723 0.85235 1.20577 1.21406 1.19873 1.20898 1.01208 0.89428 0.99526 1.16963 0.85895 0.83059 1.09298 1.91501 1.76394 1.49002 1.94310 0.92462 0.92276 0.87962 0.84477 0.85110 0.90042 0.94199 0.83534 0.94557 0.90865 0.79429 0.95184 0.92158 0.93725 0.90464 0.97472 0.95210 0.99472 0.93013 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.25 10.36 -19.61 -0.20 -3.46 16 3 C 0.09 1.00 6.69 -39.18 -0.26 0.74 16 4 C -0.18 -1.58 9.04 -39.45 -0.36 -1.94 16 5 C -0.08 -0.72 9.69 -39.59 -0.38 -1.10 16 6 C -0.09 -0.84 5.39 -104.61 -0.56 -1.40 16 7 C 0.10 0.92 5.81 -4.98 -0.03 0.89 16 8 N -0.67 -7.75 6.36 -115.06 -0.73 -8.48 16 9 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 10 C 0.12 1.89 3.24 -26.73 -0.09 1.80 16 11 H 0.10 1.85 6.78 -51.93 -0.35 1.50 16 12 O -0.53 -9.08 13.08 -35.23 -0.46 -9.54 16 13 C 0.03 0.44 4.66 -3.82 -0.02 0.42 16 14 N -0.53 -11.43 4.56 -244.37 -1.11 -12.55 16 15 C 0.04 0.73 9.37 60.06 0.56 1.30 16 16 C 0.19 5.04 4.55 -4.98 -0.02 5.01 16 17 C -0.50 -14.33 8.39 -34.44 -0.29 -14.62 16 18 H 0.06 1.81 7.17 -52.48 -0.38 1.43 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 21 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.09 -0.94 9.67 -39.54 -0.38 -1.33 16 26 C 0.07 0.79 7.31 -39.30 -0.29 0.50 16 27 F -0.13 -1.73 17.11 2.25 0.04 -1.69 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.14 0.86 6.30 -52.49 -0.33 0.53 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.35 4.18 8.72 -39.29 -0.34 3.84 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.36 4.83 9.04 45.56 0.41 5.25 16 39 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 40 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.64 6.66 -51.93 -0.35 1.29 16 43 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 44 H 0.03 0.83 6.63 -51.92 -0.34 0.48 16 45 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 392.02 15.07 5.91 5.91 Total: -1.00 -33.41 392.02 -8.75 -42.16 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.66 Total: 3.69 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.24 Total: -6.84 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -1.11 Total: -47.17 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.66 Total: -12.99 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.41 -8.75 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560870741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.303 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds