Wall clock time and date at job start Tue Mar 31 2020 14:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35959 * 117.00256 * 2 1 4 4 C 1.38660 * 120.06028 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.96707 * 179.70570 * 4 3 2 6 6 C 1.38269 * 120.09665 * 0.55132 * 5 4 3 7 7 C 1.50692 * 119.93784 * 179.72400 * 6 5 4 8 8 N 1.46898 * 109.47322 * 269.72421 * 7 6 5 9 9 C 1.46900 * 110.99985 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46945 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47076 * 60.00021 * 10 9 8 12 12 O 1.42901 * 109.46988 * 300.00078 * 10 9 8 13 13 C 1.53001 * 109.47020 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47094 * 180.46532 * 13 10 9 15 15 C 1.46897 * 111.00257 * 199.84917 * 14 13 10 16 16 C 1.46903 * 111.00263 * 75.89387 * 14 13 10 17 17 C 1.50698 * 109.47127 * 190.00388 * 16 14 13 18 18 H 1.08006 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.37879 * 120.00036 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47085 * 90.00257 * 21 19 17 23 23 H 1.48503 * 109.47165 * 210.00334 * 21 19 17 24 24 H 1.48503 * 109.47302 * 330.00281 * 21 19 17 25 25 C 1.38263 * 120.12140 * 359.44676 * 6 5 4 26 26 C 1.38332 * 120.02960 * 0.28095 * 25 6 5 27 27 F 1.35103 * 120.04550 * 179.97438 * 26 25 6 28 28 H 1.08994 * 109.47139 * 300.00489 * 1 2 3 29 29 H 1.09006 * 109.46708 * 60.00424 * 1 2 3 30 30 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.01909 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.95545 * 180.29642 * 5 4 3 33 33 H 1.09001 * 109.47271 * 149.72400 * 7 6 5 34 34 H 1.09003 * 109.47521 * 29.73084 * 7 6 5 35 35 H 1.00903 * 110.99864 * 56.04502 * 8 7 6 36 36 H 1.08998 * 109.47445 * 299.99997 * 9 8 7 37 37 H 1.09001 * 109.47216 * 60.00183 * 9 8 7 38 38 H 0.96701 * 114.00160 * 299.99950 * 12 10 9 39 39 H 1.09001 * 109.47110 * 300.46064 * 13 10 9 40 40 H 1.08994 * 109.47309 * 60.45921 * 13 10 9 41 41 H 1.08998 * 109.47057 * 64.81426 * 15 14 13 42 42 H 1.08998 * 109.47318 * 184.81746 * 15 14 13 43 43 H 1.09005 * 109.46716 * 304.82181 * 15 14 13 44 44 H 1.09007 * 109.46775 * 310.00046 * 16 14 13 45 45 H 1.08996 * 109.47473 * 69.99941 * 16 14 13 46 46 H 0.96999 * 119.99906 * 179.97438 * 20 19 17 47 47 H 1.08004 * 119.98154 * 180.25026 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3025 3.6777 0.0008 7 6 3.9851 5.0211 0.0012 8 7 4.2068 5.4582 -1.3836 9 6 4.8725 6.7671 -1.4223 10 6 5.0853 7.1882 -2.8778 11 1 4.1208 7.2561 -3.3811 12 8 5.9008 6.2192 -3.5396 13 6 5.7792 8.5512 -2.9181 14 7 5.9735 8.9606 -4.3154 15 6 7.0183 9.9877 -4.4228 16 6 4.7129 9.4282 -4.9072 17 6 4.8906 9.6050 -6.3932 18 1 5.8448 9.3917 -6.8521 19 6 3.8351 10.0389 -7.1670 20 7 2.6731 10.2981 -6.6082 21 14 4.0556 10.2587 -9.0088 22 1 3.7190 8.9896 -9.7025 23 1 3.1572 11.3390 -9.4895 24 1 5.4660 10.6222 -9.2986 25 6 4.0580 2.5197 0.0003 26 6 3.4334 1.2855 -0.0002 27 9 4.1713 0.1538 -0.0012 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2138 2.3201 0.0005 32 1 1.3344 4.5114 0.0119 33 1 4.9432 4.9417 0.5149 34 1 3.3564 5.7480 0.5155 35 1 3.3400 5.4776 -1.8998 36 1 4.2503 7.5064 -0.9178 37 1 5.8368 6.6994 -0.9186 38 1 6.7761 6.1059 -3.1445 39 1 5.1614 9.2888 -2.4060 40 1 6.7472 8.4809 -2.4221 41 1 7.9763 9.5642 -4.1213 42 1 7.0825 10.3342 -5.4542 43 1 6.7711 10.8267 -3.7722 44 1 3.9292 8.6941 -4.7198 45 1 4.4325 10.3813 -4.4589 46 1 1.9307 10.6038 -7.1525 47 1 5.1365 2.5789 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560870741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:56 Heat of formation + Delta-G solvation = -124.643536 kcal Electronic energy + Delta-G solvation = -26974.572507 eV Core-core repulsion = 22878.282613 eV Total energy + Delta-G solvation = -4096.289894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.84480 -41.06347 -39.55912 -38.84948 -37.28032 -35.88126 -34.58698 -32.27522 -31.73971 -30.57920 -29.29795 -28.52763 -27.17790 -25.76506 -24.56539 -23.78945 -22.79412 -22.29451 -21.61496 -19.33772 -18.58981 -18.12054 -17.85209 -17.43987 -17.17720 -16.82397 -16.69542 -16.27710 -16.06936 -15.84511 -15.73848 -15.67107 -15.19490 -15.16166 -14.97363 -14.69476 -14.25297 -14.00191 -13.90996 -13.36274 -13.20771 -13.06647 -13.02660 -12.92430 -12.63583 -12.54142 -12.52170 -12.36899 -12.28797 -12.11601 -12.03955 -12.00039 -11.48458 -11.30482 -10.64774 -10.59680 -9.94634 -9.39226 -9.11843 -8.90813 -8.20052 -6.28760 0.10786 0.17419 1.40302 1.42606 1.52921 2.18274 2.40715 2.45487 3.07625 3.13136 3.20255 3.53806 3.65521 3.76419 3.83744 3.99830 4.03720 4.21257 4.25733 4.34957 4.36433 4.39619 4.50106 4.51017 4.52220 4.58547 4.65920 4.69709 4.73530 4.80709 4.81414 4.90198 5.05878 5.10403 5.13842 5.15672 5.27439 5.32119 5.48190 5.63608 5.66158 6.03822 6.09516 6.26533 6.35357 6.38663 6.68372 6.87269 7.19040 7.40387 8.91045 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002138 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.938108 B =13096.138272 C =14059.438447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.083 3.917 4 C -0.179 4.179 5 C -0.080 4.080 6 C -0.094 4.094 7 C 0.106 3.894 8 N -0.686 5.686 9 C 0.043 3.957 10 C 0.125 3.875 11 H 0.058 0.942 12 O -0.553 6.553 13 C 0.026 3.974 14 N -0.544 5.544 15 C 0.039 3.961 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.095 4.095 26 C 0.035 3.965 27 F -0.149 7.149 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.340 0.660 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.378 0.622 39 H 0.028 0.972 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.004 0.996 45 H -0.041 1.041 46 H 0.264 0.736 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.869 -14.819 19.862 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.036 3.964 4 C -0.198 4.198 5 C -0.098 4.098 6 C -0.095 4.095 7 C -0.023 4.023 8 N -0.317 5.317 9 C -0.087 4.087 10 C 0.065 3.935 11 H 0.076 0.924 12 O -0.358 6.358 13 C -0.103 4.103 14 N -0.267 5.267 15 C -0.109 4.109 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.189 1.189 25 C -0.114 4.114 26 C 0.016 3.984 27 F -0.128 7.128 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.225 0.775 39 H 0.046 0.954 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.022 0.978 45 H -0.023 1.023 46 H 0.073 0.927 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.708 -15.799 19.120 24.862 hybrid contribution -0.924 1.421 -0.013 1.695 sum -2.632 -14.379 19.107 24.057 Atomic orbital electron populations 1.23425 0.75723 1.05869 1.02707 1.86102 1.24114 1.26104 1.88731 1.19236 0.90797 0.86481 0.99847 1.21388 1.01502 0.90651 1.06221 1.21259 0.93909 0.98212 0.96468 1.19658 0.93482 0.94654 1.01685 1.20860 1.00450 0.91339 0.89603 1.60389 1.29785 1.28415 1.13102 1.22535 1.00720 0.89675 0.95785 1.21667 0.93523 0.86581 0.91745 0.92379 1.86641 1.30074 1.60384 1.58709 1.22803 1.01201 0.96671 0.89627 1.61923 1.08856 1.39871 1.16089 1.22240 0.94842 0.92741 1.01082 1.19364 0.86995 0.91225 0.94021 1.21492 0.97569 1.43471 0.93501 0.92210 1.25894 0.94797 0.95215 1.03836 1.70074 1.02698 1.47161 1.37581 0.85418 0.78379 0.77850 0.79194 1.20107 1.20575 1.18850 1.21021 1.01671 0.89349 0.99397 1.17328 0.86658 0.83090 1.11354 1.91447 1.76831 1.49842 1.94668 0.90895 0.91466 0.86327 0.81952 0.83018 0.89007 0.92688 0.84260 0.93732 0.88609 0.77502 0.95368 0.88541 0.90083 0.92846 0.96908 0.97800 1.02318 0.92737 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.96 10.36 -93.08 -0.96 -7.92 16 3 C 0.08 1.76 6.69 22.53 0.15 1.91 16 4 C -0.18 -2.86 9.04 22.36 0.20 -2.66 16 5 C -0.08 -1.25 9.69 22.26 0.22 -1.03 16 6 C -0.09 -1.67 5.39 -19.85 -0.11 -1.78 16 7 C 0.11 1.69 5.81 85.55 0.50 2.19 16 8 N -0.69 -14.73 6.36 -517.94 -3.29 -18.02 16 9 C 0.04 0.92 5.35 86.30 0.46 1.38 16 10 C 0.13 3.90 3.24 30.60 0.10 4.00 16 11 H 0.06 2.28 6.78 -2.39 -0.02 2.27 16 12 O -0.55 -18.49 13.08 -148.98 -1.95 -20.44 16 13 C 0.03 0.85 4.66 86.30 0.40 1.25 16 14 N -0.54 -23.30 4.56 -927.06 -4.22 -27.53 16 15 C 0.04 1.48 9.37 127.69 1.20 2.67 16 16 C 0.21 11.32 4.55 85.56 0.39 11.71 16 17 C -0.52 -30.30 8.39 25.60 0.21 -30.09 16 18 H 0.06 3.44 7.17 -2.91 -0.02 3.42 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 21 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.10 -1.94 9.67 22.30 0.22 -1.73 16 26 C 0.04 0.84 7.31 22.45 0.16 1.01 16 27 F -0.15 -4.04 17.11 44.97 0.77 -3.27 16 28 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 29 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.16 1.64 6.30 -2.91 -0.02 1.63 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 33 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 34 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.34 7.98 8.72 -89.69 -0.78 7.20 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.38 9.37 9.04 -74.06 -0.67 8.70 16 39 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 40 H 0.10 2.46 7.94 -2.39 -0.02 2.44 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 2.25 6.66 -2.39 -0.02 2.23 16 43 H 0.01 0.45 8.13 -2.38 -0.02 0.43 16 44 H 0.00 0.23 6.63 -2.38 -0.02 0.21 16 45 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 46 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 47 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -74.20 392.02 -2.14 -76.34 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.47 Total: 19.50 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.68 Total: -9.40 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -7.23 Total: -102.02 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -2.91 Total: -28.36 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.20 -2.14 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560870741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.304 kcal (2) G-P(sol) polarization free energy of solvation -74.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds