Wall clock time and date at job start Tue Mar 31 2020 14:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00002 * 2 1 4 4 C 1.38775 * 120.04412 * 180.02562 * 3 2 1 5 5 C 1.38128 * 119.99626 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.08010 * 0.24986 * 5 4 3 7 7 C 1.50697 * 119.95888 * 179.72051 * 6 5 4 8 8 N 1.46900 * 109.46610 * 105.00051 * 7 6 5 9 9 C 1.46902 * 110.99786 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47065 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46731 * 304.99375 * 10 9 8 12 12 O 1.42891 * 109.47307 * 64.99876 * 10 9 8 13 13 C 1.53006 * 109.46693 * 184.99791 * 10 9 8 14 14 N 1.46899 * 109.46701 * 178.50619 * 13 10 9 15 15 C 1.46898 * 111.00053 * 164.01270 * 14 13 10 16 16 C 1.46901 * 111.00211 * 287.96321 * 14 13 10 17 17 C 1.50697 * 109.47165 * 170.00055 * 16 14 13 18 18 H 1.08002 * 120.00479 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99909 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47390 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47242 * 209.99744 * 21 19 17 24 24 H 1.48504 * 109.47287 * 329.99613 * 21 19 17 25 25 C 1.38479 * 120.08299 * 359.49571 * 6 5 4 26 26 F 1.35100 * 119.99826 * 180.25898 * 25 6 5 27 27 C 1.38390 * 120.00436 * 0.50305 * 25 6 5 28 28 H 1.09003 * 109.46839 * 60.00638 * 1 2 3 29 29 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47517 * 300.00671 * 1 2 3 31 31 H 1.08003 * 119.99955 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96002 * 179.97438 * 5 4 3 33 33 H 1.08989 * 109.47375 * 225.00109 * 7 6 5 34 34 H 1.09001 * 109.47273 * 345.00688 * 7 6 5 35 35 H 1.00902 * 111.00369 * 303.95207 * 8 7 6 36 36 H 1.09006 * 109.46838 * 300.00066 * 9 8 7 37 37 H 1.08996 * 109.47187 * 60.00212 * 9 8 7 38 38 H 0.96699 * 114.00084 * 59.99952 * 12 10 9 39 39 H 1.08993 * 109.47052 * 298.50786 * 13 10 9 40 40 H 1.09003 * 109.47220 * 58.51402 * 13 10 9 41 41 H 1.08996 * 109.47034 * 65.48672 * 15 14 13 42 42 H 1.08996 * 109.47480 * 185.48757 * 15 14 13 43 43 H 1.09001 * 109.47289 * 305.48435 * 15 14 13 44 44 H 1.08990 * 109.47455 * 290.00244 * 16 14 13 45 45 H 1.09007 * 109.47296 * 50.00332 * 16 14 13 46 46 H 0.97000 * 119.99894 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.04314 * 179.77211 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4317 1.2846 -0.0005 5 6 4.0578 2.5158 0.0000 6 6 3.3055 3.6758 0.0063 7 6 3.9914 5.0176 0.0132 8 7 3.8947 5.6237 -1.3214 9 6 4.5545 6.9358 -1.3527 10 6 4.4327 7.5346 -2.7554 11 1 4.8301 6.8308 -3.4866 12 8 3.0578 7.7959 -3.0440 13 6 5.2252 8.8417 -2.8225 14 7 5.1377 9.3982 -4.1792 15 6 5.5490 10.8084 -4.1973 16 6 5.9337 8.6056 -5.1258 17 6 5.6293 9.0498 -6.5333 18 1 4.9162 9.8421 -6.7073 19 6 6.2612 8.4448 -7.5990 20 7 7.1299 7.4805 -7.3872 21 14 5.8844 8.9960 -9.3436 22 1 6.8157 10.0861 -9.7305 23 1 6.0519 7.8492 -10.2721 24 1 4.4861 9.4908 -9.4154 25 6 1.9224 3.6061 0.0015 26 9 1.1890 4.7407 0.0024 27 6 1.2916 2.3744 0.0010 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0207 0.3792 -0.0005 32 1 5.1363 2.5725 0.0000 33 1 3.5099 5.6680 0.7434 34 1 5.0407 4.8879 0.2782 35 1 4.2767 5.0104 -2.0257 36 1 4.0773 7.5998 -0.6318 37 1 5.6077 6.8191 -1.0974 38 1 2.6383 8.4157 -2.4318 39 1 4.8110 9.5547 -2.1098 40 1 6.2691 8.6467 -2.5765 41 1 6.6069 10.8815 -3.9455 42 1 5.3826 11.2226 -5.1916 43 1 4.9625 11.3673 -3.4681 44 1 6.9940 8.7514 -4.9201 45 1 5.6840 7.5502 -5.0159 46 1 7.5747 7.0551 -8.1369 47 1 0.2129 2.3194 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563806353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:59 Heat of formation + Delta-G solvation = -98.523482 kcal Electronic energy + Delta-G solvation = -27267.082011 eV Core-core repulsion = 23171.924767 eV Total energy + Delta-G solvation = -4095.157243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.95159 -40.40314 -38.36282 -37.74973 -35.86337 -34.79287 -32.44734 -31.40931 -31.00247 -29.34922 -27.87260 -27.26140 -26.02630 -24.32002 -23.12229 -22.98462 -21.67045 -21.38576 -19.96088 -18.77549 -17.32718 -16.64809 -16.46757 -16.25533 -16.23121 -15.61421 -15.52724 -15.37367 -14.84598 -14.72775 -14.59953 -14.51475 -14.22742 -14.05225 -13.57322 -13.26763 -13.20679 -12.83044 -12.69509 -12.42172 -12.14872 -11.94702 -11.75265 -11.50534 -11.48238 -11.33425 -11.21444 -11.09026 -10.89048 -10.65484 -10.62824 -10.30672 -9.71390 -9.45297 -9.19508 -9.08743 -8.50777 -8.38930 -8.33847 -7.16270 -5.98564 -3.98514 0.89293 0.95033 2.83941 3.24806 3.35254 3.41325 3.46972 4.03457 4.12017 4.38817 4.47449 4.54426 4.63106 4.71838 4.76712 4.84298 4.94984 5.00700 5.08073 5.19032 5.26135 5.33818 5.37092 5.46355 5.52095 5.65917 5.74265 5.75339 5.78140 5.79016 5.88585 6.07454 6.08778 6.12957 6.36489 6.39796 6.54619 6.74461 6.92432 6.97522 7.31339 7.33896 7.35326 7.84684 8.12646 8.22366 8.32888 8.60320 9.08675 9.65157 11.12690 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002295 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.033152 B =12200.034407 C =13115.383233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.156 3.844 4 C -0.165 4.165 5 C -0.045 4.045 6 C -0.158 4.158 7 C 0.105 3.895 8 N -0.674 5.674 9 C 0.029 3.971 10 C 0.118 3.882 11 H 0.101 0.899 12 O -0.530 6.530 13 C 0.026 3.974 14 N -0.531 5.531 15 C 0.040 3.960 16 C 0.193 3.807 17 C -0.502 4.502 18 H 0.063 0.937 19 C 0.053 3.947 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.170 3.830 26 F -0.124 7.124 27 C -0.252 4.252 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.346 0.654 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.360 0.640 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.009 0.991 42 H 0.073 0.927 43 H 0.042 0.958 44 H -0.013 1.013 45 H 0.031 0.969 46 H 0.260 0.740 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 -11.849 20.737 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.110 3.890 4 C -0.184 4.184 5 C -0.064 4.064 6 C -0.159 4.159 7 C -0.024 4.024 8 N -0.305 5.305 9 C -0.101 4.101 10 C 0.058 3.942 11 H 0.118 0.882 12 O -0.332 6.332 13 C -0.104 4.104 14 N -0.255 5.255 15 C -0.108 4.108 16 C 0.068 3.932 17 C -0.541 4.541 18 H 0.081 0.919 19 C -0.147 4.147 20 N -0.541 5.541 21 Si 0.725 3.275 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.197 1.197 25 C 0.149 3.851 26 F -0.102 7.102 27 C -0.271 4.271 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.205 0.795 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.028 0.972 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.005 0.995 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.942 -12.289 20.103 25.573 hybrid contribution 1.272 0.663 -0.234 1.453 sum -8.670 -11.626 19.869 24.599 Atomic orbital electron populations 1.23126 0.77987 1.04224 1.01734 1.86096 1.21760 1.26403 1.88328 1.18728 0.92090 0.83671 0.94508 1.20435 0.91236 0.98876 1.07827 1.20782 1.00034 0.90214 0.95335 1.19792 0.91917 0.96393 1.07822 1.20713 0.97743 0.91302 0.92638 1.60397 1.61300 1.04401 1.04427 1.22735 0.96560 0.91340 0.99442 1.21862 0.83144 0.95443 0.93747 0.88166 1.86693 1.22731 1.67069 1.56755 1.22682 0.97978 0.96604 0.93106 1.62029 1.57130 1.02142 1.04188 1.22193 0.96483 0.90230 1.01933 1.19772 0.89715 0.93294 0.90465 1.21159 1.23438 1.19215 0.90281 0.91883 1.24985 0.95242 0.95141 0.99356 1.69951 1.27962 1.24858 1.31339 0.86500 0.78772 0.78030 0.84150 1.20839 1.21275 1.19721 1.17134 0.88565 0.81532 0.97828 1.91543 1.76875 1.48774 1.93035 1.21157 1.01155 0.91270 1.13562 0.92239 0.87963 0.92449 0.84531 0.84377 0.90198 0.94088 0.83582 0.90913 0.94599 0.79461 0.92114 0.95350 0.97223 0.90811 0.93872 0.99485 0.95072 0.93017 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.87 10.50 -19.43 -0.20 -3.07 16 3 C 0.16 1.55 6.69 -39.22 -0.26 1.29 16 4 C -0.16 -1.52 9.99 -39.42 -0.39 -1.91 16 5 C -0.05 -0.41 9.66 -39.61 -0.38 -0.79 16 6 C -0.16 -1.69 5.40 -104.53 -0.56 -2.25 16 7 C 0.10 1.11 5.49 -4.98 -0.03 1.08 16 8 N -0.67 -8.69 6.44 -115.06 -0.74 -9.43 16 9 C 0.03 0.37 5.32 -3.82 -0.02 0.35 16 10 C 0.12 1.98 3.17 -26.73 -0.08 1.89 16 11 H 0.10 1.98 6.55 -51.93 -0.34 1.64 16 12 O -0.53 -9.57 13.18 -35.23 -0.46 -10.03 16 13 C 0.03 0.46 4.63 -3.82 -0.02 0.44 16 14 N -0.53 -11.67 4.60 -244.38 -1.12 -12.80 16 15 C 0.04 0.80 9.32 60.06 0.56 1.36 16 16 C 0.19 5.11 4.57 -4.98 -0.02 5.08 16 17 C -0.50 -14.49 8.54 -34.44 -0.29 -14.79 16 18 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 21 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.17 1.98 7.24 -39.44 -0.29 1.70 16 26 F -0.12 -1.64 16.75 2.25 0.04 -1.60 16 27 C -0.25 -2.57 9.02 -39.37 -0.35 -2.92 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.14 0.95 8.00 -52.49 -0.42 0.53 16 33 H 0.08 0.85 8.08 -51.94 -0.42 0.43 16 34 H 0.04 0.38 7.95 -51.93 -0.41 -0.04 16 35 H 0.35 4.61 8.72 -39.29 -0.34 4.27 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.36 5.14 9.05 45.56 0.41 5.55 16 39 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 40 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 42 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 43 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 44 H -0.01 -0.36 8.11 -51.93 -0.42 -0.78 16 45 H 0.03 0.88 6.38 -51.92 -0.33 0.55 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.14 1.17 6.30 -52.49 -0.33 0.84 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -33.60 391.20 -8.76 -42.36 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.62 Total: 4.84 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.26 Total: -6.88 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.13 Total: -48.66 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.67 Total: -13.10 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.60 -8.76 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563806353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.159 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds