Wall clock time and date at job start Tue Mar 31 2020 14:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00002 * 2 1 4 4 C 1.38775 * 120.04412 * 180.02562 * 3 2 1 5 5 C 1.38128 * 119.99626 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.08010 * 0.24986 * 5 4 3 7 7 C 1.50697 * 119.95888 * 179.72051 * 6 5 4 8 8 N 1.46900 * 109.46610 * 105.00051 * 7 6 5 9 9 C 1.46902 * 110.99786 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47065 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46731 * 304.99375 * 10 9 8 12 12 O 1.42891 * 109.47307 * 64.99876 * 10 9 8 13 13 C 1.53006 * 109.46693 * 184.99791 * 10 9 8 14 14 N 1.46899 * 109.46701 * 178.50619 * 13 10 9 15 15 C 1.46898 * 111.00053 * 164.01270 * 14 13 10 16 16 C 1.46901 * 111.00211 * 287.96321 * 14 13 10 17 17 C 1.50697 * 109.47165 * 170.00055 * 16 14 13 18 18 H 1.08002 * 120.00479 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99909 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47390 * 89.99850 * 21 19 17 23 23 H 1.48499 * 109.47242 * 209.99744 * 21 19 17 24 24 H 1.48504 * 109.47287 * 329.99613 * 21 19 17 25 25 C 1.38479 * 120.08299 * 359.49571 * 6 5 4 26 26 F 1.35100 * 119.99826 * 180.25898 * 25 6 5 27 27 C 1.38390 * 120.00436 * 0.50305 * 25 6 5 28 28 H 1.09003 * 109.46839 * 60.00638 * 1 2 3 29 29 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47517 * 300.00671 * 1 2 3 31 31 H 1.08003 * 119.99955 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96002 * 179.97438 * 5 4 3 33 33 H 1.08989 * 109.47375 * 225.00109 * 7 6 5 34 34 H 1.09001 * 109.47273 * 345.00688 * 7 6 5 35 35 H 1.00902 * 111.00369 * 303.95207 * 8 7 6 36 36 H 1.09006 * 109.46838 * 300.00066 * 9 8 7 37 37 H 1.08996 * 109.47187 * 60.00212 * 9 8 7 38 38 H 0.96699 * 114.00084 * 59.99952 * 12 10 9 39 39 H 1.08993 * 109.47052 * 298.50786 * 13 10 9 40 40 H 1.09003 * 109.47220 * 58.51402 * 13 10 9 41 41 H 1.08996 * 109.47034 * 65.48672 * 15 14 13 42 42 H 1.08996 * 109.47480 * 185.48757 * 15 14 13 43 43 H 1.09001 * 109.47289 * 305.48435 * 15 14 13 44 44 H 1.08990 * 109.47455 * 290.00244 * 16 14 13 45 45 H 1.09007 * 109.47296 * 50.00332 * 16 14 13 46 46 H 0.97000 * 119.99894 * 180.02562 * 20 19 17 47 47 H 1.08001 * 120.04314 * 179.77211 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4317 1.2846 -0.0005 5 6 4.0578 2.5158 0.0000 6 6 3.3055 3.6758 0.0063 7 6 3.9914 5.0176 0.0132 8 7 3.8947 5.6237 -1.3214 9 6 4.5545 6.9358 -1.3527 10 6 4.4327 7.5346 -2.7554 11 1 4.8301 6.8308 -3.4866 12 8 3.0578 7.7959 -3.0440 13 6 5.2252 8.8417 -2.8225 14 7 5.1377 9.3982 -4.1792 15 6 5.5490 10.8084 -4.1973 16 6 5.9337 8.6056 -5.1258 17 6 5.6293 9.0498 -6.5333 18 1 4.9162 9.8421 -6.7073 19 6 6.2612 8.4448 -7.5990 20 7 7.1299 7.4805 -7.3872 21 14 5.8844 8.9960 -9.3436 22 1 6.8157 10.0861 -9.7305 23 1 6.0519 7.8492 -10.2721 24 1 4.4861 9.4908 -9.4154 25 6 1.9224 3.6061 0.0015 26 9 1.1890 4.7407 0.0024 27 6 1.2916 2.3744 0.0010 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0207 0.3792 -0.0005 32 1 5.1363 2.5725 0.0000 33 1 3.5099 5.6680 0.7434 34 1 5.0407 4.8879 0.2782 35 1 4.2767 5.0104 -2.0257 36 1 4.0773 7.5998 -0.6318 37 1 5.6077 6.8191 -1.0974 38 1 2.6383 8.4157 -2.4318 39 1 4.8110 9.5547 -2.1098 40 1 6.2691 8.6467 -2.5765 41 1 6.6069 10.8815 -3.9455 42 1 5.3826 11.2226 -5.1916 43 1 4.9625 11.3673 -3.4681 44 1 6.9940 8.7514 -4.9201 45 1 5.6840 7.5502 -5.0159 46 1 7.5747 7.0551 -8.1369 47 1 0.2129 2.3194 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563806353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:59 Heat of formation + Delta-G solvation = -124.909425 kcal Electronic energy + Delta-G solvation = -27268.226191 eV Core-core repulsion = 23171.924767 eV Total energy + Delta-G solvation = -4096.301424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.86394 -41.09533 -39.58126 -38.68608 -37.29901 -35.98043 -34.59856 -32.35985 -31.74083 -30.57939 -29.31675 -28.47422 -27.17703 -25.75546 -24.59583 -23.72705 -22.87568 -22.34786 -21.61669 -19.49522 -18.60521 -18.10602 -17.73011 -17.05302 -16.97298 -16.86792 -16.74762 -16.42972 -16.34183 -15.94360 -15.70605 -15.53329 -15.46823 -14.98751 -14.93954 -14.74260 -14.35153 -13.98021 -13.87987 -13.51663 -13.28700 -13.13784 -12.95123 -12.83873 -12.67053 -12.59517 -12.54922 -12.31487 -12.27465 -12.17991 -12.14365 -11.86729 -11.49354 -11.30451 -10.68670 -10.60024 -9.95202 -9.37662 -9.18645 -8.93267 -8.20377 -6.29257 0.13775 0.18542 1.39407 1.41607 1.53285 2.24870 2.40416 2.48305 3.04133 3.12518 3.26284 3.48248 3.68085 3.71502 3.81525 3.94400 3.96502 4.14792 4.22814 4.33721 4.35296 4.38558 4.45738 4.50249 4.54368 4.58567 4.61937 4.67378 4.72862 4.75600 4.78664 5.02970 5.04873 5.08168 5.12657 5.15116 5.25234 5.31687 5.33859 5.65392 5.66782 6.00874 6.08074 6.29330 6.31981 6.36634 6.66635 6.86470 7.14379 7.39859 8.90824 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002295 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.033152 B =12200.034407 C =13115.383233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.149 3.851 4 C -0.168 4.168 5 C -0.042 4.042 6 C -0.167 4.167 7 C 0.109 3.891 8 N -0.688 5.688 9 C 0.044 3.956 10 C 0.125 3.875 11 H 0.060 0.940 12 O -0.554 6.554 13 C 0.027 3.973 14 N -0.544 5.544 15 C 0.042 3.958 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.144 3.856 26 F -0.139 7.139 27 C -0.256 4.256 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.339 0.661 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.377 0.623 39 H 0.097 0.903 40 H 0.028 0.972 41 H 0.009 0.991 42 H 0.053 0.947 43 H 0.082 0.918 44 H -0.041 1.041 45 H 0.005 0.995 46 H 0.264 0.736 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 -11.712 21.606 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.103 3.897 4 C -0.187 4.187 5 C -0.061 4.061 6 C -0.169 4.169 7 C -0.019 4.019 8 N -0.319 5.319 9 C -0.086 4.086 10 C 0.065 3.935 11 H 0.078 0.922 12 O -0.359 6.359 13 C -0.102 4.102 14 N -0.268 5.268 15 C -0.107 4.107 16 C 0.084 3.916 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.192 1.192 25 C 0.124 3.876 26 F -0.118 7.118 27 C -0.276 4.276 28 H 0.079 0.921 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.157 0.843 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.225 0.775 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.101 0.899 44 H -0.023 1.023 45 H 0.023 0.977 46 H 0.073 0.927 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.355 -12.136 21.006 26.378 hybrid contribution 1.343 0.559 -0.441 1.520 sum -9.013 -11.577 20.565 25.262 Atomic orbital electron populations 1.23395 0.76338 1.05912 1.02246 1.86086 1.23544 1.26006 1.88167 1.18914 0.92586 0.83874 0.94354 1.20747 0.91293 0.99659 1.06960 1.21050 1.01133 0.89582 0.94294 1.19913 0.91695 0.97012 1.08279 1.20717 0.98826 0.91174 0.91228 1.60386 1.61552 1.04464 1.05544 1.22533 0.97514 0.91583 0.96945 1.21684 0.82376 0.94441 0.95039 0.92231 1.86642 1.23366 1.67877 1.58062 1.22798 0.98450 0.97721 0.91241 1.61928 1.56082 1.02877 1.05917 1.22212 0.97204 0.89170 1.02070 1.19377 0.88529 0.92574 0.91148 1.21484 1.23507 1.19307 0.91782 0.92241 1.25908 0.94912 0.95078 1.03895 1.70073 1.28809 1.25856 1.32777 0.85405 0.78847 0.77914 0.78605 1.19566 1.20658 1.19199 1.17438 0.89164 0.81557 0.99437 1.91495 1.77285 1.49580 1.93409 1.21295 1.01940 0.90981 1.13358 0.92126 0.85768 0.91535 0.82841 0.82072 0.90190 0.92200 0.84286 0.88968 0.93513 0.77538 0.88474 0.95336 0.97287 0.92773 0.89916 1.02331 0.97702 0.92726 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.32 -5.61 10.50 -92.43 -0.97 -6.58 16 3 C 0.15 2.84 6.69 22.50 0.15 2.99 16 4 C -0.17 -2.87 9.99 22.37 0.22 -2.65 16 5 C -0.04 -0.71 9.66 22.25 0.21 -0.49 16 6 C -0.17 -3.46 5.40 -19.80 -0.11 -3.56 16 7 C 0.11 2.17 5.49 85.56 0.47 2.64 16 8 N -0.69 -17.34 6.44 -517.93 -3.34 -20.68 16 9 C 0.04 1.07 5.32 86.30 0.46 1.53 16 10 C 0.12 4.17 3.17 30.60 0.10 4.26 16 11 H 0.06 2.48 6.55 -2.39 -0.02 2.46 16 12 O -0.55 -19.84 13.18 -148.98 -1.96 -21.80 16 13 C 0.03 0.92 4.63 86.31 0.40 1.31 16 14 N -0.54 -23.92 4.60 -927.07 -4.27 -28.18 16 15 C 0.04 1.60 9.32 127.69 1.19 2.79 16 16 C 0.21 11.52 4.57 85.56 0.39 11.91 16 17 C -0.52 -30.77 8.54 25.60 0.22 -30.55 16 18 H 0.06 3.47 7.10 -2.91 -0.02 3.44 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 20 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 21 Si 0.97 45.71 29.54 68.60 2.03 47.73 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C 0.14 3.35 7.24 22.36 0.16 3.52 16 26 F -0.14 -3.72 16.75 44.97 0.75 -2.97 16 27 C -0.26 -5.15 9.02 22.41 0.20 -4.95 16 28 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 31 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.16 1.85 8.00 -2.91 -0.02 1.83 16 33 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.06 0.97 7.95 -2.39 -0.02 0.95 16 35 H 0.34 9.15 8.72 -89.69 -0.78 8.37 16 36 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.38 10.22 9.05 -74.06 -0.67 9.55 16 39 H 0.10 2.60 7.88 -2.39 -0.02 2.58 16 40 H 0.03 0.98 8.05 -2.39 -0.02 0.96 16 41 H 0.01 0.33 8.13 -2.39 -0.02 0.31 16 42 H 0.05 2.27 6.90 -2.39 -0.02 2.25 16 43 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 44 H -0.04 -2.42 8.11 -2.39 -0.02 -2.44 16 45 H 0.00 0.29 6.38 -2.38 -0.02 0.28 16 46 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 Total: -1.00 -74.00 391.20 -2.29 -76.29 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.46 Total: 22.91 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.65 Total: -9.53 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -7.32 Total: -106.04 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -2.93 Total: -28.38 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.75 Total: -2.97 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.00 -2.29 -76.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563806353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.624 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds