Wall clock time and date at job start Tue Mar 31 2020 14:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99867 * 2 1 4 4 C 1.38766 * 120.04158 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.99119 * 179.70704 * 4 3 2 6 6 C 1.38252 * 120.08053 * 0.53026 * 5 4 3 7 7 C 1.50702 * 119.95602 * 179.76537 * 6 5 4 8 8 N 1.46893 * 109.47178 * 259.72518 * 7 6 5 9 9 C 1.46901 * 111.00024 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47406 * 59.99712 * 10 9 8 12 12 O 1.42905 * 109.46872 * 299.99796 * 10 9 8 13 13 C 1.52998 * 109.47318 * 179.97438 * 10 9 8 14 14 N 1.46906 * 109.47197 * 182.15693 * 13 10 9 15 15 C 1.46901 * 110.99925 * 199.76710 * 14 13 10 16 16 C 1.46892 * 110.99774 * 75.81142 * 14 13 10 17 17 C 1.50701 * 109.46993 * 189.99771 * 16 14 13 18 18 H 1.07994 * 120.00328 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99584 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47108 * 120.00613 * 21 19 17 24 24 H 1.48507 * 109.47091 * 240.00414 * 21 19 17 25 25 C 1.38469 * 120.08650 * 359.49071 * 6 5 4 26 26 F 1.35095 * 119.99879 * 180.25057 * 25 6 5 27 27 C 1.38394 * 120.00165 * 0.23491 * 25 6 5 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47441 * 300.00529 * 1 2 3 30 30 H 1.08999 * 109.46975 * 60.00546 * 1 2 3 31 31 H 1.08003 * 120.00781 * 359.97438 * 4 3 2 32 32 H 1.08009 * 119.96002 * 180.29658 * 5 4 3 33 33 H 1.09006 * 109.46941 * 139.72222 * 7 6 5 34 34 H 1.08997 * 109.47222 * 19.72832 * 7 6 5 35 35 H 1.00899 * 111.00258 * 56.05122 * 8 7 6 36 36 H 1.08995 * 109.47180 * 59.99940 * 9 8 7 37 37 H 1.09002 * 109.47373 * 300.00035 * 9 8 7 38 38 H 0.96701 * 114.00201 * 299.99769 * 12 10 9 39 39 H 1.09000 * 109.47245 * 62.15773 * 13 10 9 40 40 H 1.09002 * 109.47237 * 302.15962 * 13 10 9 41 41 H 1.08999 * 109.47031 * 291.01429 * 15 14 13 42 42 H 1.09002 * 109.47006 * 51.00954 * 15 14 13 43 43 H 1.08993 * 109.46940 * 171.01218 * 15 14 13 44 44 H 1.08994 * 109.47530 * 310.00139 * 16 14 13 45 45 H 1.09008 * 109.47253 * 70.00012 * 16 14 13 46 46 H 0.97000 * 119.99606 * 179.97438 * 20 19 17 47 47 H 1.07999 * 120.03892 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9191 3.6055 0.0067 6 6 3.2997 3.6786 0.0012 7 6 3.9821 5.0223 0.0025 8 7 4.4184 5.3513 -1.3610 9 6 5.0900 6.6573 -1.3981 10 6 5.5284 6.9648 -2.8314 11 1 4.6541 6.9871 -3.4819 12 8 6.4309 5.9521 -3.2810 13 6 6.2272 8.3253 -2.8702 14 7 6.6023 8.6439 -4.2543 15 6 7.6549 9.6678 -4.2922 16 6 5.4304 9.0645 -5.0337 17 6 5.7998 9.1452 -6.4925 18 1 6.8046 8.9074 -6.8090 19 6 4.8547 9.5217 -7.4232 20 7 3.6310 9.8109 -7.0378 21 14 5.3126 9.6210 -9.2315 22 1 6.7399 9.2483 -9.4020 23 1 4.4609 8.6861 -10.0098 24 1 5.1008 11.0072 -9.7204 25 6 4.0563 2.5189 0.0002 26 9 5.4053 2.5925 -0.0001 27 6 3.4306 1.2845 -0.0002 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2124 2.3196 0.0005 32 1 1.3310 4.5114 0.0119 33 1 4.8484 4.9892 0.6633 34 1 3.2856 5.7832 0.3547 35 1 3.6424 5.3250 -2.0053 36 1 5.9640 6.6351 -0.7473 37 1 4.4015 7.4298 -1.0556 38 1 7.2337 5.8755 -2.7473 39 1 7.1228 8.2916 -2.2497 40 1 5.5513 9.0919 -2.4912 41 1 7.2467 10.6211 -3.9564 42 1 8.4735 9.3718 -3.6360 43 1 8.0256 9.7703 -5.3120 44 1 4.6271 8.3398 -4.9019 45 1 5.0968 10.0433 -4.6887 46 1 2.9663 10.0761 -7.6926 47 1 4.0201 0.3796 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563806354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:02 Heat of formation + Delta-G solvation = -98.370756 kcal Electronic energy + Delta-G solvation = -27189.098613 eV Core-core repulsion = 23093.947992 eV Total energy + Delta-G solvation = -4095.150621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.97879 -40.43424 -38.35006 -37.72884 -35.87284 -34.78672 -32.45326 -31.63142 -30.84404 -29.29070 -27.90066 -27.26600 -26.05145 -24.34790 -23.21400 -22.98955 -21.61665 -21.32906 -19.99236 -18.78304 -17.33305 -16.59327 -16.45594 -16.26180 -16.25643 -15.65982 -15.64324 -15.39623 -15.06187 -14.70966 -14.61792 -14.44543 -14.16747 -13.89805 -13.51948 -13.23018 -13.16892 -12.92832 -12.69705 -12.57318 -12.28299 -11.94492 -11.76298 -11.58708 -11.35870 -11.28147 -11.25432 -11.07442 -10.90594 -10.63131 -10.59460 -10.34168 -9.73247 -9.46392 -9.14639 -9.07983 -8.56984 -8.39881 -8.34166 -7.15823 -5.99571 -3.99442 0.87469 0.94035 2.75921 3.22884 3.34051 3.41264 3.47128 4.10370 4.17577 4.37063 4.46942 4.52520 4.59714 4.70699 4.74442 4.84541 4.97488 4.99798 5.04011 5.08606 5.27983 5.32762 5.36335 5.44662 5.51396 5.66262 5.68453 5.73146 5.76135 5.78562 5.92425 6.06705 6.07971 6.12503 6.37945 6.40674 6.54235 6.74605 6.91469 6.96015 7.30237 7.33409 7.34938 7.84669 8.11972 8.22017 8.33217 8.59802 9.08390 9.64434 11.11703 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002261 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.511355 B =12379.507954 C =13456.748610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.156 3.844 4 C -0.221 4.221 5 C -0.044 4.044 6 C -0.155 4.155 7 C 0.104 3.896 8 N -0.673 5.673 9 C 0.028 3.972 10 C 0.119 3.881 11 H 0.099 0.901 12 O -0.530 6.530 13 C 0.026 3.974 14 N -0.531 5.531 15 C 0.041 3.959 16 C 0.193 3.807 17 C -0.501 4.501 18 H 0.064 0.936 19 C 0.053 3.947 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.286 1.286 25 C 0.168 3.832 26 F -0.123 7.123 27 C -0.195 4.195 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.345 0.655 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.361 0.639 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.010 0.990 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.030 0.970 45 H -0.012 1.012 46 H 0.260 0.740 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -14.964 20.129 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.110 3.890 4 C -0.240 4.240 5 C -0.063 4.063 6 C -0.156 4.156 7 C -0.025 4.025 8 N -0.304 5.304 9 C -0.102 4.102 10 C 0.059 3.941 11 H 0.117 0.883 12 O -0.333 6.333 13 C -0.104 4.104 14 N -0.255 5.255 15 C -0.107 4.107 16 C 0.068 3.932 17 C -0.540 4.540 18 H 0.082 0.918 19 C -0.148 4.148 20 N -0.541 5.541 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.212 1.212 25 C 0.148 3.852 26 F -0.101 7.101 27 C -0.214 4.214 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.206 0.794 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.029 0.971 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.006 0.994 46 H 0.069 0.931 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.169 -15.950 19.428 25.663 hybrid contribution -0.718 1.747 -0.066 1.890 sum -5.888 -14.203 19.362 24.724 Atomic orbital electron populations 1.23116 0.77865 1.04221 1.01660 1.86074 1.21767 1.26572 1.88341 1.18606 0.91391 0.84424 0.94588 1.21234 1.00422 0.91997 1.10306 1.20739 0.92875 0.97594 0.95091 1.19762 0.93678 0.94603 1.07589 1.20720 0.98320 0.91445 0.91975 1.60366 1.33058 1.30953 1.06024 1.22731 0.98887 0.89276 0.99266 1.21845 0.93331 0.86795 0.92162 0.88314 1.86684 1.33093 1.56216 1.57258 1.22690 0.98712 0.96499 0.92485 1.62018 1.12664 1.42347 1.08461 1.22192 0.94108 0.92440 1.01992 1.19780 0.87002 0.93678 0.92772 1.21207 0.97327 1.44235 0.91239 0.91801 1.24993 0.94944 0.95631 0.99207 1.69965 1.02923 1.47151 1.34110 0.86441 0.78681 0.77387 0.84923 1.19628 1.21009 1.21213 1.17030 0.77211 0.92708 0.98268 1.91541 1.28427 1.97032 1.93116 1.20243 0.92540 0.97727 1.10900 0.88013 0.92441 0.92258 0.84838 0.84818 0.90122 0.94166 0.83610 0.90909 0.94609 0.79407 0.92131 0.95220 0.97105 0.93899 0.90957 0.95207 0.99435 0.93086 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.85 10.50 -19.44 -0.20 -3.05 16 3 C 0.16 1.53 6.68 -39.23 -0.26 1.27 16 4 C -0.22 -1.87 9.04 -39.43 -0.36 -2.23 16 5 C -0.04 -0.39 9.66 -39.62 -0.38 -0.78 16 6 C -0.15 -1.64 5.40 -104.53 -0.56 -2.21 16 7 C 0.10 1.10 5.53 -4.98 -0.03 1.07 16 8 N -0.67 -8.56 6.36 -115.06 -0.73 -9.29 16 9 C 0.03 0.36 5.35 -3.82 -0.02 0.34 16 10 C 0.12 1.97 3.25 -26.73 -0.09 1.89 16 11 H 0.10 1.93 6.73 -51.93 -0.35 1.58 16 12 O -0.53 -9.47 13.11 -35.23 -0.46 -9.93 16 13 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 14 N -0.53 -11.66 4.59 -244.37 -1.12 -12.78 16 15 C 0.04 0.82 9.31 60.07 0.56 1.38 16 16 C 0.19 5.10 4.55 -4.98 -0.02 5.08 16 17 C -0.50 -14.45 8.58 -34.44 -0.30 -14.74 16 18 H 0.06 1.84 7.10 -52.49 -0.37 1.47 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 21 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.17 1.96 7.24 -39.44 -0.29 1.67 16 26 F -0.12 -1.60 16.66 2.25 0.04 -1.56 16 27 C -0.19 -2.08 9.97 -39.37 -0.39 -2.48 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.13 0.81 6.30 -52.48 -0.33 0.48 16 32 H 0.13 0.92 8.03 -52.48 -0.42 0.50 16 33 H 0.08 0.86 7.94 -51.93 -0.41 0.44 16 34 H 0.04 0.37 8.00 -51.93 -0.42 -0.05 16 35 H 0.35 4.53 8.72 -39.29 -0.34 4.19 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.36 5.14 9.05 45.56 0.41 5.55 16 39 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 40 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 41 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 42 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 43 H 0.07 1.52 7.01 -51.93 -0.36 1.16 16 44 H 0.03 0.84 6.60 -51.93 -0.34 0.50 16 45 H -0.01 -0.34 8.07 -51.92 -0.42 -0.76 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -33.48 391.17 -8.76 -42.24 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.62 Total: 4.49 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.26 Total: -6.74 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -1.12 Total: -48.45 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.67 Total: -12.99 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.48 -8.76 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563806354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.136 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds