Wall clock time and date at job start Tue Mar 31 2020 14:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99867 * 2 1 4 4 C 1.38766 * 120.04158 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.99119 * 179.70704 * 4 3 2 6 6 C 1.38252 * 120.08053 * 0.53026 * 5 4 3 7 7 C 1.50702 * 119.95602 * 179.76537 * 6 5 4 8 8 N 1.46893 * 109.47178 * 259.72518 * 7 6 5 9 9 C 1.46901 * 111.00024 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47406 * 59.99712 * 10 9 8 12 12 O 1.42905 * 109.46872 * 299.99796 * 10 9 8 13 13 C 1.52998 * 109.47318 * 179.97438 * 10 9 8 14 14 N 1.46906 * 109.47197 * 182.15693 * 13 10 9 15 15 C 1.46901 * 110.99925 * 199.76710 * 14 13 10 16 16 C 1.46892 * 110.99774 * 75.81142 * 14 13 10 17 17 C 1.50701 * 109.46993 * 189.99771 * 16 14 13 18 18 H 1.07994 * 120.00328 * 0.02562 * 17 16 14 19 19 C 1.37887 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99584 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47108 * 120.00613 * 21 19 17 24 24 H 1.48507 * 109.47091 * 240.00414 * 21 19 17 25 25 C 1.38469 * 120.08650 * 359.49071 * 6 5 4 26 26 F 1.35095 * 119.99879 * 180.25057 * 25 6 5 27 27 C 1.38394 * 120.00165 * 0.23491 * 25 6 5 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47441 * 300.00529 * 1 2 3 30 30 H 1.08999 * 109.46975 * 60.00546 * 1 2 3 31 31 H 1.08003 * 120.00781 * 359.97438 * 4 3 2 32 32 H 1.08009 * 119.96002 * 180.29658 * 5 4 3 33 33 H 1.09006 * 109.46941 * 139.72222 * 7 6 5 34 34 H 1.08997 * 109.47222 * 19.72832 * 7 6 5 35 35 H 1.00899 * 111.00258 * 56.05122 * 8 7 6 36 36 H 1.08995 * 109.47180 * 59.99940 * 9 8 7 37 37 H 1.09002 * 109.47373 * 300.00035 * 9 8 7 38 38 H 0.96701 * 114.00201 * 299.99769 * 12 10 9 39 39 H 1.09000 * 109.47245 * 62.15773 * 13 10 9 40 40 H 1.09002 * 109.47237 * 302.15962 * 13 10 9 41 41 H 1.08999 * 109.47031 * 291.01429 * 15 14 13 42 42 H 1.09002 * 109.47006 * 51.00954 * 15 14 13 43 43 H 1.08993 * 109.46940 * 171.01218 * 15 14 13 44 44 H 1.08994 * 109.47530 * 310.00139 * 16 14 13 45 45 H 1.09008 * 109.47253 * 70.00012 * 16 14 13 46 46 H 0.97000 * 119.99606 * 179.97438 * 20 19 17 47 47 H 1.07999 * 120.03892 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9191 3.6055 0.0067 6 6 3.2997 3.6786 0.0012 7 6 3.9821 5.0223 0.0025 8 7 4.4184 5.3513 -1.3610 9 6 5.0900 6.6573 -1.3981 10 6 5.5284 6.9648 -2.8314 11 1 4.6541 6.9871 -3.4819 12 8 6.4309 5.9521 -3.2810 13 6 6.2272 8.3253 -2.8702 14 7 6.6023 8.6439 -4.2543 15 6 7.6549 9.6678 -4.2922 16 6 5.4304 9.0645 -5.0337 17 6 5.7998 9.1452 -6.4925 18 1 6.8046 8.9074 -6.8090 19 6 4.8547 9.5217 -7.4232 20 7 3.6310 9.8109 -7.0378 21 14 5.3126 9.6210 -9.2315 22 1 6.7399 9.2483 -9.4020 23 1 4.4609 8.6861 -10.0098 24 1 5.1008 11.0072 -9.7204 25 6 4.0563 2.5189 0.0002 26 9 5.4053 2.5925 -0.0001 27 6 3.4306 1.2845 -0.0002 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2124 2.3196 0.0005 32 1 1.3310 4.5114 0.0119 33 1 4.8484 4.9892 0.6633 34 1 3.2856 5.7832 0.3547 35 1 3.6424 5.3250 -2.0053 36 1 5.9640 6.6351 -0.7473 37 1 4.4015 7.4298 -1.0556 38 1 7.2337 5.8755 -2.7473 39 1 7.1228 8.2916 -2.2497 40 1 5.5513 9.0919 -2.4912 41 1 7.2467 10.6211 -3.9564 42 1 8.4735 9.3718 -3.6360 43 1 8.0256 9.7703 -5.3120 44 1 4.6271 8.3398 -4.9019 45 1 5.0968 10.0433 -4.6887 46 1 2.9663 10.0761 -7.6926 47 1 4.0201 0.3796 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563806354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:02 Heat of formation + Delta-G solvation = -124.626065 kcal Electronic energy + Delta-G solvation = -27190.237128 eV Core-core repulsion = 23093.947992 eV Total energy + Delta-G solvation = -4096.289136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88334 -41.10777 -39.55951 -38.65494 -37.30573 -35.96259 -34.59941 -32.49962 -31.67187 -30.50458 -29.30337 -28.44322 -27.19220 -25.76668 -24.60183 -23.83126 -22.83424 -22.25749 -21.63778 -19.47562 -18.60435 -18.11890 -17.65236 -17.04988 -16.96097 -16.87766 -16.74278 -16.48391 -16.35731 -16.02751 -15.72842 -15.67234 -15.40367 -14.94538 -14.90890 -14.61117 -14.23080 -13.96555 -13.86897 -13.56876 -13.28148 -13.18880 -13.06283 -12.93236 -12.67160 -12.56243 -12.53278 -12.35913 -12.30620 -12.13116 -11.93342 -11.88181 -11.51748 -11.30013 -10.68009 -10.60920 -9.90953 -9.40004 -9.19377 -8.92573 -8.20890 -6.29686 0.11768 0.19843 1.39175 1.40763 1.54200 2.17523 2.40216 2.47361 3.04255 3.12037 3.40457 3.50791 3.68450 3.72280 3.82112 3.94015 3.98494 4.18352 4.23686 4.29422 4.38611 4.40918 4.41401 4.48055 4.54033 4.57854 4.62606 4.66987 4.76219 4.76557 4.79343 4.98678 5.00905 5.08283 5.12359 5.20971 5.24663 5.31209 5.32368 5.65694 5.67174 6.00437 6.07885 6.31813 6.33201 6.36824 6.66824 6.86429 7.14923 7.39599 8.90477 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002261 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.511355 B =12379.507954 C =13456.748610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.150 3.850 4 C -0.215 4.215 5 C -0.043 4.043 6 C -0.165 4.165 7 C 0.108 3.892 8 N -0.686 5.686 9 C 0.043 3.957 10 C 0.126 3.874 11 H 0.060 0.940 12 O -0.553 6.553 13 C 0.027 3.973 14 N -0.544 5.544 15 C 0.043 3.957 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.000 4.000 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.276 1.276 25 C 0.145 3.855 26 F -0.138 7.138 27 C -0.210 4.210 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.340 0.660 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.377 0.623 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.008 0.992 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.004 0.996 45 H -0.040 1.040 46 H 0.264 0.736 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 -15.105 20.832 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.104 3.896 4 C -0.234 4.234 5 C -0.061 4.061 6 C -0.166 4.166 7 C -0.020 4.020 8 N -0.317 5.317 9 C -0.087 4.087 10 C 0.066 3.934 11 H 0.078 0.922 12 O -0.358 6.358 13 C -0.102 4.102 14 N -0.268 5.268 15 C -0.105 4.105 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.201 1.201 25 C 0.125 3.875 26 F -0.116 7.116 27 C -0.229 4.229 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.224 0.776 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.022 0.978 45 H -0.022 1.022 46 H 0.073 0.927 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.427 -16.098 20.162 26.365 hybrid contribution -0.685 1.711 -0.227 1.857 sum -6.111 -14.387 19.935 25.332 Atomic orbital electron populations 1.23430 0.75794 1.05888 1.02692 1.86059 1.23953 1.26341 1.88157 1.18740 0.91234 0.85312 0.94315 1.21554 1.01777 0.91263 1.08774 1.21040 0.92326 0.98751 0.94026 1.19872 0.94456 0.94163 1.08158 1.20715 0.98749 0.91931 0.90592 1.60353 1.33264 1.30835 1.07285 1.22525 0.99813 0.89732 0.96589 1.21664 0.91806 0.86245 0.93725 0.92231 1.86635 1.34203 1.56520 1.58473 1.22806 1.00391 0.96725 0.90323 1.61916 1.11275 1.42725 1.10900 1.22209 0.94439 0.92026 1.01868 1.19388 0.88094 0.91371 0.92757 1.21515 0.97248 1.44507 0.92733 0.92271 1.25907 0.94802 0.95026 1.04056 1.70080 1.03939 1.47669 1.35824 0.85354 0.78612 0.77799 0.78983 1.18937 1.20436 1.20138 1.17285 0.76790 0.93609 0.99796 1.91492 1.29516 1.97145 1.93474 1.20362 0.93426 0.97571 1.11553 0.86229 0.90984 0.91531 0.82116 0.82513 0.90242 0.92307 0.84208 0.89039 0.93638 0.77560 0.88572 0.95266 0.97322 0.89919 0.92852 0.97800 1.02227 0.92719 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.67 10.50 -92.46 -0.97 -6.64 16 3 C 0.15 2.83 6.68 22.50 0.15 2.98 16 4 C -0.22 -3.24 9.04 22.37 0.20 -3.03 16 5 C -0.04 -0.69 9.66 22.25 0.21 -0.47 16 6 C -0.16 -3.37 5.40 -19.81 -0.11 -3.48 16 7 C 0.11 2.15 5.53 85.56 0.47 2.62 16 8 N -0.69 -17.00 6.36 -517.94 -3.29 -20.29 16 9 C 0.04 1.05 5.35 86.30 0.46 1.51 16 10 C 0.13 4.16 3.25 30.59 0.10 4.26 16 11 H 0.06 2.44 6.73 -2.39 -0.02 2.42 16 12 O -0.55 -19.59 13.11 -148.98 -1.95 -21.54 16 13 C 0.03 0.90 4.65 86.30 0.40 1.31 16 14 N -0.54 -23.92 4.59 -927.06 -4.25 -28.17 16 15 C 0.04 1.65 9.31 127.69 1.19 2.84 16 16 C 0.21 11.49 4.55 85.56 0.39 11.88 16 17 C -0.52 -30.67 8.58 25.60 0.22 -30.45 16 18 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 20 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 21 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.15 3.42 7.24 22.36 0.16 3.58 16 26 F -0.14 -3.69 16.66 44.97 0.75 -2.94 16 27 C -0.21 -4.56 9.97 22.41 0.22 -4.34 16 28 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 31 H 0.16 1.45 6.30 -2.91 -0.02 1.43 16 32 H 0.16 1.73 8.03 -2.91 -0.02 1.70 16 33 H 0.08 1.59 7.94 -2.38 -0.02 1.57 16 34 H 0.06 0.95 8.00 -2.39 -0.02 0.93 16 35 H 0.34 8.93 8.72 -89.70 -0.78 8.14 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.38 10.22 9.05 -74.06 -0.67 9.55 16 39 H 0.10 2.59 7.75 -2.39 -0.02 2.57 16 40 H 0.03 1.01 8.00 -2.39 -0.02 0.99 16 41 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 42 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16 43 H 0.05 2.23 7.01 -2.39 -0.02 2.22 16 44 H 0.00 0.23 6.60 -2.39 -0.02 0.22 16 45 H -0.04 -2.35 8.07 -2.38 -0.02 -2.36 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -74.03 391.17 -2.22 -76.24 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.46 Total: 21.69 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.65 Total: -9.10 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -7.26 Total: -105.36 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -2.92 Total: -28.18 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.75 Total: -2.94 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.03 -2.22 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563806354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.382 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds