Wall clock time and date at job start Tue Mar 31 2020 14:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00194 * 2 1 4 4 C 1.50700 * 109.47194 * 293.95472 * 3 2 1 5 5 H 1.08003 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00012 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00206 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00082 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47323 * 89.99629 * 8 6 4 10 10 H 1.48501 * 109.46988 * 209.99765 * 8 6 4 11 11 H 1.48499 * 109.46924 * 329.99303 * 8 6 4 12 12 C 1.46893 * 111.00237 * 123.95687 * 2 1 3 13 13 C 1.53000 * 109.47397 * 164.00720 * 12 2 1 14 14 H 1.09003 * 109.46989 * 58.50996 * 13 12 2 15 15 O 1.42898 * 109.46959 * 298.50724 * 13 12 2 16 16 C 1.52999 * 109.47181 * 178.50810 * 13 12 2 17 17 N 1.46904 * 109.47256 * 185.00040 * 16 13 12 18 18 C 1.46894 * 111.00033 * 180.02562 * 17 16 13 19 19 C 1.53002 * 109.46814 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47194 * 65.00067 * 19 18 17 21 21 C 1.35948 * 117.00152 * 179.97438 * 20 19 18 22 22 C 1.38712 * 120.02843 * 359.72142 * 21 20 19 23 23 C 1.38147 * 119.96797 * 179.79239 * 22 21 20 24 24 C 1.38454 * 120.03493 * 0.48607 * 23 22 21 25 25 F 1.35090 * 119.97198 * 179.72633 * 24 23 22 26 26 C 1.38452 * 120.05351 * 359.74433 * 24 23 22 27 27 C 1.38151 * 120.03471 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46689 * 301.53086 * 1 2 3 29 29 H 1.09003 * 109.47372 * 61.52701 * 1 2 3 30 30 H 1.08994 * 109.47183 * 181.53124 * 1 2 3 31 31 H 1.08995 * 109.47411 * 53.95384 * 3 2 1 32 32 H 1.09005 * 109.47225 * 173.95991 * 3 2 1 33 33 H 0.96997 * 120.00432 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47474 * 44.00447 * 12 2 1 35 35 H 1.09003 * 109.47152 * 284.00659 * 12 2 1 36 36 H 0.96701 * 114.00526 * 299.99926 * 15 13 12 37 37 H 1.09003 * 109.47479 * 64.99870 * 16 13 12 38 38 H 1.09000 * 109.47043 * 305.00128 * 16 13 12 39 39 H 1.00898 * 110.99579 * 56.04487 * 17 16 13 40 40 H 1.09002 * 109.47085 * 299.99743 * 18 17 16 41 41 H 1.09001 * 109.47299 * 59.99898 * 18 17 16 42 42 H 1.09007 * 109.47012 * 184.99842 * 19 18 17 43 43 H 1.08997 * 109.46966 * 304.99381 * 19 18 17 44 44 H 1.08007 * 120.01517 * 0.02562 * 22 21 20 45 45 H 1.08007 * 119.98283 * 180.20785 * 23 22 21 46 46 H 1.08004 * 119.98383 * 180.02562 * 26 24 23 47 47 H 1.07995 * 120.01481 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3494 -1.5284 7 7 1.7136 3.9394 -2.6614 8 14 3.0001 4.2761 -0.2309 9 1 4.4524 4.0635 -0.4558 10 1 2.6919 5.7259 -0.3226 11 1 2.6294 3.7755 1.1171 12 6 1.9955 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8982 14 1 4.0282 -0.1550 0.7696 15 8 3.6033 -1.8839 -0.2787 16 6 4.0308 -1.8496 2.0997 17 7 5.4754 -2.0503 1.9245 18 6 6.0466 -2.7844 3.0615 19 6 7.5493 -2.9731 2.8436 20 8 8.1957 -1.6988 2.8531 21 6 9.5430 -1.6887 2.6720 22 6 10.2284 -2.8816 2.4947 23 6 11.5970 -2.8696 2.3064 24 6 12.2858 -1.6686 2.3046 25 9 13.6248 -1.6588 2.1259 26 6 11.6035 -0.4777 2.4863 27 6 10.2343 -0.4863 2.6700 28 1 -0.3633 0.5374 0.8760 29 1 -0.3634 0.4899 -0.9034 30 1 -0.3633 -1.0272 0.0275 31 1 1.5612 1.9274 0.8309 32 1 3.0798 1.3444 0.1081 33 1 1.9882 4.8554 -2.8234 34 1 1.4356 -1.6957 1.2398 35 1 1.8935 -0.1782 2.0497 36 1 3.1332 -2.7279 -0.2348 37 1 3.5359 -2.8179 2.1753 38 1 3.8512 -1.2778 3.0101 39 1 5.9488 -1.1699 1.7875 40 1 5.8810 -2.2194 3.9788 41 1 5.5657 -3.7591 3.1432 42 1 7.9571 -3.5934 3.6418 43 1 7.7188 -3.4594 1.8830 44 1 9.6919 -3.8189 2.5000 45 1 12.1305 -3.7980 2.1650 46 1 12.1419 0.4586 2.4843 47 1 9.7024 0.4428 2.8121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568604376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:00 Heat of formation + Delta-G solvation = -95.681284 kcal Electronic energy + Delta-G solvation = -26878.891460 eV Core-core repulsion = 22783.857464 eV Total energy + Delta-G solvation = -4095.033997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.12230 -40.47408 -38.39001 -37.70085 -36.07821 -34.97304 -32.41473 -31.73821 -31.05777 -29.61926 -28.57401 -27.84970 -25.47057 -23.92046 -23.10964 -22.82924 -21.79865 -21.47619 -19.93694 -18.78288 -17.70338 -17.04150 -16.93025 -16.61557 -16.35810 -15.83689 -15.53697 -15.22418 -15.17763 -14.76173 -14.58528 -14.48378 -14.17146 -14.01998 -13.77399 -13.43533 -13.25330 -13.06181 -12.77955 -12.61228 -12.40400 -12.31107 -11.96141 -11.85286 -11.54795 -11.32032 -11.16306 -11.13023 -11.06751 -10.77384 -10.49721 -10.17909 -9.87609 -9.58322 -9.55614 -9.19203 -8.57026 -8.53192 -8.45312 -7.33341 -6.01817 -3.98423 0.76715 0.85441 2.77727 3.19969 3.29698 3.36683 3.37009 3.81110 3.96180 4.26156 4.37851 4.43988 4.56574 4.61153 4.71505 4.79652 4.84735 4.91958 4.93568 5.08412 5.15731 5.25604 5.31494 5.34803 5.45161 5.49202 5.51309 5.59317 5.61785 5.72545 5.78317 5.84306 5.90820 6.03008 6.24065 6.32292 6.35624 6.65608 6.77234 6.85693 6.97866 6.98914 7.20861 7.61746 7.89224 8.04788 8.18619 8.69272 9.07504 9.59826 11.11547 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.002368 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.523685 B =11821.820231 C =13574.390287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.023 3.977 13 C 0.117 3.883 14 H 0.098 0.902 15 O -0.529 6.529 16 C 0.027 3.973 17 N -0.679 5.679 18 C 0.061 3.939 19 C 0.058 3.942 20 O -0.311 6.311 21 C 0.129 3.871 22 C -0.182 4.182 23 C -0.113 4.113 24 C 0.055 3.945 25 F -0.143 7.143 26 C -0.112 4.112 27 C -0.124 4.124 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.046 0.954 31 H -0.015 1.015 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.362 0.638 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.351 0.649 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.142 0.858 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.487 -16.623 16.251 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.107 4.107 13 C 0.056 3.944 14 H 0.115 0.885 15 O -0.331 6.331 16 C -0.103 4.103 17 N -0.311 5.311 18 C -0.068 4.068 19 C -0.017 4.017 20 O -0.225 6.225 21 C 0.083 3.917 22 C -0.200 4.200 23 C -0.132 4.132 24 C 0.035 3.965 25 F -0.121 7.121 26 C -0.131 4.131 27 C -0.143 4.143 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.003 0.997 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.207 0.793 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.171 0.829 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.852 -16.567 15.161 27.488 hybrid contribution 0.189 1.032 2.298 2.526 sum 16.041 -15.535 17.459 28.345 Atomic orbital electron populations 1.22232 0.88139 0.99256 1.01295 1.61848 1.06989 1.16417 1.39183 1.20226 0.94939 0.84059 0.97222 1.21018 1.35413 0.97057 1.00840 0.90106 1.24898 0.95835 0.97387 0.95267 1.69891 1.47014 1.13257 1.23840 0.86893 0.81081 0.79318 0.82657 1.20031 1.21196 1.19467 1.22744 0.96094 0.98501 0.93363 1.21859 0.94396 0.94070 0.84041 0.88462 1.86706 1.75403 1.33173 1.37856 1.22738 0.88780 1.00589 0.98162 1.60400 1.03291 1.27123 1.40297 1.22003 0.91505 1.00246 0.93061 1.22994 0.92605 0.83847 1.02234 1.86075 1.17099 1.32565 1.86724 1.19002 0.82999 0.93915 0.95791 1.21134 0.94486 0.97840 1.06590 1.20935 0.94264 0.97308 1.00644 1.17581 0.77584 0.94623 1.06675 1.91488 1.30020 1.97392 1.93244 1.20986 0.94025 0.97592 1.00474 1.20346 0.92898 0.97082 1.03925 0.97138 0.90190 0.93531 0.99712 0.95812 0.92705 0.91632 0.95317 0.79285 0.90763 0.94594 0.82950 0.94287 0.88989 0.91506 0.90532 0.84418 0.84509 0.84018 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.32 60.06 0.56 1.31 16 2 N -0.52 -10.87 4.60 -244.37 -1.12 -12.00 16 3 C 0.16 3.97 3.64 -4.98 -0.02 3.95 16 4 C -0.50 -14.61 9.09 -34.44 -0.31 -14.93 16 5 H 0.08 2.55 7.34 -52.48 -0.39 2.16 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 8 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 12 C 0.02 0.37 4.63 -3.83 -0.02 0.35 16 13 C 0.12 1.77 3.17 -26.73 -0.08 1.69 16 14 H 0.10 1.74 6.55 -51.93 -0.34 1.40 16 15 O -0.53 -8.74 13.18 -35.23 -0.46 -9.20 16 16 C 0.03 0.31 5.32 -3.82 -0.02 0.29 16 17 N -0.68 -7.53 6.45 -113.78 -0.73 -8.27 16 18 C 0.06 0.50 6.11 -3.83 -0.02 0.48 16 19 C 0.06 0.44 5.08 37.16 0.19 0.63 16 20 O -0.31 -3.09 9.66 -19.58 -0.19 -3.28 16 21 C 0.13 1.23 6.69 -39.24 -0.26 0.97 16 22 C -0.18 -1.47 9.04 -39.44 -0.36 -1.83 16 23 C -0.11 -0.92 10.02 -39.54 -0.40 -1.31 16 24 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 25 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 26 C -0.11 -0.97 10.02 -39.53 -0.40 -1.36 16 27 C -0.12 -1.13 9.98 -39.44 -0.39 -1.53 16 28 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 29 H 0.08 1.70 6.90 -51.93 -0.36 1.34 16 30 H 0.05 0.74 7.97 -51.93 -0.41 0.32 16 31 H -0.01 -0.37 7.17 -51.93 -0.37 -0.74 16 32 H 0.02 0.59 5.81 -51.93 -0.30 0.29 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 35 H 0.03 0.45 8.05 -51.93 -0.42 0.04 16 36 H 0.36 4.54 9.05 45.56 0.41 4.95 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.35 4.33 8.29 -39.29 -0.33 4.01 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.37 7.65 -51.93 -0.40 -0.03 16 43 H 0.08 0.59 7.67 -51.93 -0.40 0.19 16 44 H 0.14 0.83 6.30 -52.48 -0.33 0.49 16 45 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 46 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 47 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -33.66 388.01 -9.03 -42.69 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.59 Total: 4.96 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.92 Total: -9.20 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.08 Total: -47.49 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.65 Total: -12.48 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.66 -9.03 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568604376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.996 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds