Wall clock time and date at job start Tue Mar 31 2020 14:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00194 * 2 1 4 4 C 1.50700 * 109.47194 * 293.95472 * 3 2 1 5 5 H 1.08003 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00012 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00206 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00082 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47323 * 89.99629 * 8 6 4 10 10 H 1.48501 * 109.46988 * 209.99765 * 8 6 4 11 11 H 1.48499 * 109.46924 * 329.99303 * 8 6 4 12 12 C 1.46893 * 111.00237 * 123.95687 * 2 1 3 13 13 C 1.53000 * 109.47397 * 164.00720 * 12 2 1 14 14 H 1.09003 * 109.46989 * 58.50996 * 13 12 2 15 15 O 1.42898 * 109.46959 * 298.50724 * 13 12 2 16 16 C 1.52999 * 109.47181 * 178.50810 * 13 12 2 17 17 N 1.46904 * 109.47256 * 185.00040 * 16 13 12 18 18 C 1.46894 * 111.00033 * 180.02562 * 17 16 13 19 19 C 1.53002 * 109.46814 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47194 * 65.00067 * 19 18 17 21 21 C 1.35948 * 117.00152 * 179.97438 * 20 19 18 22 22 C 1.38712 * 120.02843 * 359.72142 * 21 20 19 23 23 C 1.38147 * 119.96797 * 179.79239 * 22 21 20 24 24 C 1.38454 * 120.03493 * 0.48607 * 23 22 21 25 25 F 1.35090 * 119.97198 * 179.72633 * 24 23 22 26 26 C 1.38452 * 120.05351 * 359.74433 * 24 23 22 27 27 C 1.38151 * 120.03471 * 0.02562 * 26 24 23 28 28 H 1.09001 * 109.46689 * 301.53086 * 1 2 3 29 29 H 1.09003 * 109.47372 * 61.52701 * 1 2 3 30 30 H 1.08994 * 109.47183 * 181.53124 * 1 2 3 31 31 H 1.08995 * 109.47411 * 53.95384 * 3 2 1 32 32 H 1.09005 * 109.47225 * 173.95991 * 3 2 1 33 33 H 0.96997 * 120.00432 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47474 * 44.00447 * 12 2 1 35 35 H 1.09003 * 109.47152 * 284.00659 * 12 2 1 36 36 H 0.96701 * 114.00526 * 299.99926 * 15 13 12 37 37 H 1.09003 * 109.47479 * 64.99870 * 16 13 12 38 38 H 1.09000 * 109.47043 * 305.00128 * 16 13 12 39 39 H 1.00898 * 110.99579 * 56.04487 * 17 16 13 40 40 H 1.09002 * 109.47085 * 299.99743 * 18 17 16 41 41 H 1.09001 * 109.47299 * 59.99898 * 18 17 16 42 42 H 1.09007 * 109.47012 * 184.99842 * 19 18 17 43 43 H 1.08997 * 109.46966 * 304.99381 * 19 18 17 44 44 H 1.08007 * 120.01517 * 0.02562 * 22 21 20 45 45 H 1.08007 * 119.98283 * 180.20785 * 23 22 21 46 46 H 1.08004 * 119.98383 * 180.02562 * 26 24 23 47 47 H 1.07995 * 120.01481 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3494 -1.5284 7 7 1.7136 3.9394 -2.6614 8 14 3.0001 4.2761 -0.2309 9 1 4.4524 4.0635 -0.4558 10 1 2.6919 5.7259 -0.3226 11 1 2.6294 3.7755 1.1171 12 6 1.9955 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8982 14 1 4.0282 -0.1550 0.7696 15 8 3.6033 -1.8839 -0.2787 16 6 4.0308 -1.8496 2.0997 17 7 5.4754 -2.0503 1.9245 18 6 6.0466 -2.7844 3.0615 19 6 7.5493 -2.9731 2.8436 20 8 8.1957 -1.6988 2.8531 21 6 9.5430 -1.6887 2.6720 22 6 10.2284 -2.8816 2.4947 23 6 11.5970 -2.8696 2.3064 24 6 12.2858 -1.6686 2.3046 25 9 13.6248 -1.6588 2.1259 26 6 11.6035 -0.4777 2.4863 27 6 10.2343 -0.4863 2.6700 28 1 -0.3633 0.5374 0.8760 29 1 -0.3634 0.4899 -0.9034 30 1 -0.3633 -1.0272 0.0275 31 1 1.5612 1.9274 0.8309 32 1 3.0798 1.3444 0.1081 33 1 1.9882 4.8554 -2.8234 34 1 1.4356 -1.6957 1.2398 35 1 1.8935 -0.1782 2.0497 36 1 3.1332 -2.7279 -0.2348 37 1 3.5359 -2.8179 2.1753 38 1 3.8512 -1.2778 3.0101 39 1 5.9488 -1.1699 1.7875 40 1 5.8810 -2.2194 3.9788 41 1 5.5657 -3.7591 3.1432 42 1 7.9571 -3.5934 3.6418 43 1 7.7188 -3.4594 1.8830 44 1 9.6919 -3.8189 2.5000 45 1 12.1305 -3.7980 2.1650 46 1 12.1419 0.4586 2.4843 47 1 9.7024 0.4428 2.8121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568604376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:59 Heat of formation + Delta-G solvation = -122.594627 kcal Electronic energy + Delta-G solvation = -26880.058511 eV Core-core repulsion = 22783.857464 eV Total energy + Delta-G solvation = -4096.201047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.84312 -41.11130 -39.57242 -38.44957 -37.36566 -36.02044 -34.59003 -32.40385 -31.92586 -30.57654 -29.98608 -29.20651 -26.68676 -25.05957 -24.29231 -23.53011 -22.81785 -22.35754 -21.53122 -19.40732 -19.05837 -18.38204 -17.79655 -17.44705 -17.28301 -16.82122 -16.59052 -16.36169 -16.24773 -15.87929 -15.82225 -15.49256 -15.28119 -15.03055 -14.71226 -14.61502 -14.44224 -14.29737 -14.08855 -13.65456 -13.33200 -13.26371 -13.08956 -13.02332 -12.72648 -12.62501 -12.49119 -12.36938 -12.26465 -11.87335 -11.78986 -11.73815 -11.64598 -11.42952 -10.77966 -10.65787 -10.20643 -9.35360 -9.12269 -8.94711 -8.28639 -6.31339 0.14476 0.18433 1.31845 1.33869 1.43484 2.17575 2.32934 2.55332 2.91714 3.04606 3.31149 3.39214 3.66467 3.76969 3.79961 3.93295 4.01533 4.12501 4.18749 4.24792 4.29236 4.34310 4.38157 4.50350 4.51348 4.55144 4.61251 4.70886 4.76399 4.79093 4.85068 4.89954 4.90316 5.00463 5.10257 5.13472 5.18978 5.21125 5.22214 5.55137 5.69061 5.96560 6.04197 6.30728 6.37644 6.39534 6.66985 6.74964 7.16707 7.31746 8.88326 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.002368 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.523685 B =11821.820231 C =13574.390287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.174 3.826 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.250 1.250 12 C 0.024 3.976 13 C 0.120 3.880 14 H 0.063 0.937 15 O -0.555 6.555 16 C 0.041 3.959 17 N -0.692 5.692 18 C 0.063 3.937 19 C 0.056 3.944 20 O -0.328 6.328 21 C 0.115 3.885 22 C -0.181 4.181 23 C -0.113 4.113 24 C 0.035 3.965 25 F -0.151 7.151 26 C -0.115 4.115 27 C -0.138 4.138 28 H 0.017 0.983 29 H 0.043 0.957 30 H 0.084 0.916 31 H -0.015 1.015 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.099 0.901 35 H 0.037 0.963 36 H 0.379 0.621 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.340 0.660 40 H 0.040 0.960 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.119 -18.456 18.955 30.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.047 3.953 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.174 1.174 12 C -0.105 4.105 13 C 0.059 3.941 14 H 0.081 0.919 15 O -0.361 6.361 16 C -0.089 4.089 17 N -0.324 5.324 18 C -0.066 4.066 19 C -0.019 4.019 20 O -0.242 6.242 21 C 0.070 3.930 22 C -0.199 4.199 23 C -0.131 4.131 24 C 0.016 3.984 25 F -0.130 7.130 26 C -0.134 4.134 27 C -0.157 4.157 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.003 0.997 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.055 0.945 36 H 0.227 0.773 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.158 0.842 40 H 0.058 0.942 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.178 0.822 45 H 0.175 0.825 46 H 0.173 0.827 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.470 -18.446 17.886 30.519 hybrid contribution -0.075 1.494 1.374 2.031 sum 16.395 -16.952 19.260 30.448 Atomic orbital electron populations 1.22193 0.87302 1.01297 0.99787 1.61714 1.07991 1.14512 1.42397 1.19930 0.94901 0.86058 0.94425 1.21283 1.34668 0.97398 1.01899 0.94572 1.25868 0.97069 0.98505 0.97731 1.70053 1.48726 1.13901 1.26307 0.85740 0.79423 0.77780 0.80168 1.19159 1.20483 1.17425 1.22866 0.96842 0.99117 0.91633 1.21763 0.93618 0.93389 0.85314 0.91905 1.86658 1.76008 1.34387 1.39004 1.22555 0.89002 1.01186 0.96126 1.60431 1.03193 1.26705 1.42028 1.22113 0.91816 1.00750 0.91905 1.23140 0.92288 0.83370 1.03114 1.86054 1.17315 1.33997 1.86846 1.19219 0.83113 0.94551 0.96153 1.21371 0.94476 0.98282 1.05798 1.21204 0.94456 0.97736 0.99731 1.17838 0.77419 0.95451 1.07709 1.91464 1.30593 1.97467 1.93435 1.21157 0.93998 0.98174 1.00024 1.20504 0.93208 0.97481 1.04513 0.96412 0.93803 0.89771 0.99742 0.95847 0.92460 0.88230 0.94470 0.77350 0.88371 0.93820 0.84210 0.94166 0.86889 0.88980 0.90709 0.82219 0.82533 0.82712 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.32 127.69 1.19 2.77 16 2 N -0.54 -22.20 4.60 -927.06 -4.27 -26.46 16 3 C 0.17 8.52 3.64 85.56 0.31 8.84 16 4 C -0.51 -30.72 9.09 25.60 0.23 -30.49 16 5 H 0.04 2.41 7.34 -2.91 -0.02 2.39 16 6 C 0.01 0.31 5.47 84.65 0.46 0.78 16 7 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 8 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 12 C 0.02 0.71 4.63 86.30 0.40 1.11 16 13 C 0.12 3.42 3.17 30.59 0.10 3.52 16 14 H 0.06 2.23 6.55 -2.39 -0.02 2.21 16 15 O -0.56 -17.61 13.18 -148.98 -1.96 -19.57 16 16 C 0.04 0.80 5.32 86.30 0.46 1.26 16 17 N -0.69 -13.89 6.45 -513.88 -3.31 -17.21 16 18 C 0.06 0.84 6.11 86.31 0.53 1.37 16 19 C 0.06 0.71 5.08 71.98 0.37 1.07 16 20 O -0.33 -6.06 9.66 -92.96 -0.90 -6.96 16 21 C 0.12 2.08 6.69 22.49 0.15 2.23 16 22 C -0.18 -2.59 9.04 22.36 0.20 -2.39 16 23 C -0.11 -1.67 10.02 22.30 0.22 -1.44 16 24 C 0.04 0.63 7.30 22.37 0.16 0.79 16 25 F -0.15 -2.98 17.26 44.97 0.78 -2.20 16 26 C -0.11 -1.93 10.02 22.30 0.22 -1.71 16 27 C -0.14 -2.47 9.98 22.36 0.22 -2.25 16 28 H 0.02 0.62 8.13 -2.39 -0.02 0.60 16 29 H 0.04 1.92 6.90 -2.39 -0.02 1.90 16 30 H 0.08 2.46 7.97 -2.39 -0.02 2.44 16 31 H -0.01 -0.73 7.17 -2.39 -0.02 -0.74 16 32 H 0.02 1.15 5.81 -2.38 -0.01 1.14 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.10 2.26 7.88 -2.39 -0.02 2.24 16 35 H 0.04 1.06 8.05 -2.39 -0.02 1.04 16 36 H 0.38 8.65 9.05 -74.06 -0.67 7.98 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.34 8.07 8.29 -89.70 -0.74 7.32 16 40 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 0.70 7.65 -2.38 -0.02 0.68 16 43 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16 44 H 0.16 1.47 6.30 -2.91 -0.02 1.45 16 45 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 46 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -75.64 388.01 -2.73 -78.37 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.48 Total: 22.16 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.23 Total: -14.56 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -7.28 Total: -104.23 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -2.86 Total: -26.53 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -75.64 -2.73 -78.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568604376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.226 kcal (2) G-P(sol) polarization free energy of solvation -75.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds