Wall clock time and date at job start Tue Mar 31 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99759 * 2 1 4 4 H 1.48500 * 109.47064 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46902 * 119.99984 * 3 2 1 7 7 C 1.37878 * 120.00836 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53099 * 109.52781 * 294.67655 * 10 9 7 12 12 C 1.53034 * 109.29509 * 182.43453 * 11 10 9 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50704 * 109.46918 * 189.99613 * 14 13 12 16 16 C 1.35085 * 126.07552 * 260.02355 * 15 14 13 17 17 N 1.35039 * 107.97769 * 180.02562 * 16 15 14 18 18 H 0.97000 * 125.92941 * 179.97438 * 17 16 15 19 19 N 1.40071 * 108.13877 * 0.02562 * 17 16 15 20 20 C 1.31620 * 108.10963 * 359.71845 * 19 17 16 21 21 C 1.48427 * 126.04107 * 180.25746 * 20 19 17 22 22 C 1.39745 * 120.53192 * 325.21174 * 21 20 19 23 23 C 1.38422 * 118.31377 * 180.02562 * 22 21 20 24 24 C 1.38311 * 119.27682 * 359.97438 * 23 22 21 25 25 N 1.31889 * 121.02973 * 0.02601 * 24 23 22 26 26 C 1.31747 * 121.84809 * 359.65448 * 25 24 23 27 27 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 28 28 C 1.53039 * 109.52227 * 61.74204 * 27 13 12 29 29 H 0.97004 * 120.00513 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47202 * 60.00010 * 9 7 2 31 31 H 1.09001 * 109.47488 * 300.00154 * 9 7 2 32 32 H 1.09002 * 109.52267 * 54.87253 * 10 9 7 33 33 H 1.09007 * 109.48839 * 62.49095 * 11 10 9 34 34 H 1.09009 * 109.50682 * 302.38881 * 11 10 9 35 35 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 36 36 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 37 37 H 1.08994 * 109.47159 * 309.99836 * 14 13 12 38 38 H 1.09006 * 109.47282 * 69.99962 * 14 13 12 39 39 H 1.07995 * 126.01213 * 0.02562 * 16 15 14 40 40 H 1.07993 * 120.84424 * 359.97438 * 22 21 20 41 41 H 1.07994 * 120.35930 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.48487 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.70515 * 180.31875 * 26 25 24 44 44 H 1.08993 * 109.46229 * 181.76227 * 27 13 12 45 45 H 1.09008 * 109.45803 * 301.73838 * 27 13 12 46 46 H 1.08994 * 109.50227 * 60.75933 * 28 27 13 47 47 H 1.08998 * 109.50241 * 180.83988 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6619 -0.0015 11 6 3.0369 -3.6588 -1.3120 12 6 3.9864 -4.8588 -1.3322 13 7 3.2109 -6.1000 -1.2110 14 6 4.0751 -7.2778 -1.3653 15 6 3.2223 -8.5148 -1.4812 16 6 2.9560 -9.3931 -0.4900 17 7 2.1594 -10.3605 -0.9932 18 1 1.8115 -11.1228 -0.5045 19 7 1.9237 -10.0727 -2.3436 20 6 2.5575 -8.9582 -2.6411 21 6 2.5722 -8.2888 -3.9657 22 6 2.5529 -9.0425 -5.1423 23 6 2.5683 -8.3709 -6.3526 24 6 2.6014 -6.9882 -6.3585 25 7 2.6189 -6.3038 -5.2312 26 6 2.5991 -6.8991 -4.0561 27 6 2.4795 -6.1470 0.0615 28 6 1.4851 -4.9853 0.1231 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.9308 -3.5550 0.8394 33 1 3.6138 -2.7369 -1.3862 34 1 2.3475 -3.7260 -2.1537 35 1 4.6843 -4.7837 -0.4983 36 1 4.5411 -4.8673 -2.2704 37 1 4.6810 -7.1685 -2.2647 38 1 4.7274 -7.3662 -0.4964 39 1 3.3167 -9.3324 0.5261 40 1 2.5275 -10.1216 -5.1082 41 1 2.5538 -8.9206 -7.2821 42 1 2.6139 -6.4608 -7.3008 43 1 2.6093 -6.3044 -3.1546 44 1 1.9400 -7.0911 0.1356 45 1 3.1845 -6.0657 0.8889 46 1 0.7715 -5.0733 -0.6959 47 1 0.9530 -5.0118 1.0740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569606987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:48 Heat of formation + Delta-G solvation = 101.661400 kcal Electronic energy + Delta-G solvation = -27704.755254 eV Core-core repulsion = 24081.340654 eV Total energy + Delta-G solvation = -3623.414600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54007 -39.78524 -38.64283 -34.81850 -33.47452 -32.49988 -31.87695 -30.80385 -30.20532 -29.98535 -27.81337 -25.34081 -24.25006 -23.47134 -23.16556 -22.48463 -20.95291 -20.65180 -19.87474 -18.87250 -17.90244 -17.01248 -16.20591 -16.13268 -15.73782 -15.46912 -14.91574 -14.48688 -14.46032 -14.35324 -13.82998 -13.67764 -13.48680 -13.33472 -13.04764 -13.02325 -12.73622 -12.22160 -12.06039 -11.88305 -11.68632 -11.38746 -11.06352 -10.89510 -10.76766 -10.58868 -10.54932 -10.38085 -10.22569 -9.88549 -9.68838 -9.47429 -9.39726 -8.99382 -8.91443 -8.81028 -8.56904 -8.26411 -8.06423 -5.91196 -3.92490 0.81722 1.28094 1.73380 2.58618 2.63668 3.38309 3.42846 3.44998 3.87990 4.19424 4.23554 4.52767 4.57814 4.70401 4.81922 4.94953 4.96428 5.05882 5.15106 5.34906 5.42966 5.44382 5.47248 5.50486 5.61119 5.68167 5.77743 5.89957 5.93280 5.96420 6.00545 6.04049 6.17759 6.24200 6.31593 6.35906 6.50245 6.64961 6.73221 6.79872 7.02161 7.05857 7.17710 7.28095 7.34607 7.41592 7.42622 7.77027 7.94571 8.06005 8.09976 8.52833 9.14032 9.70700 11.20132 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.003192 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.246217 B = 8771.164627 C = 9983.023940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.100 4.100 12 C 0.053 3.947 13 N -0.534 5.534 14 C 0.125 3.875 15 C -0.208 4.208 16 C 0.064 3.936 17 N -0.474 5.474 18 H 0.440 0.560 19 N -0.287 5.287 20 C 0.140 3.860 21 C -0.075 4.075 22 C -0.054 4.054 23 C -0.185 4.185 24 C 0.101 3.899 25 N -0.480 5.480 26 C 0.125 3.875 27 C 0.062 3.938 28 C -0.112 4.112 29 H 0.259 0.741 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.177 0.823 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.199 0.801 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.064 0.936 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 -22.905 -5.482 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.138 4.138 12 C -0.074 4.074 13 N -0.259 5.259 14 C -0.004 4.004 15 C -0.219 4.219 16 C -0.084 4.084 17 N -0.182 5.182 18 H 0.284 0.716 19 N -0.110 5.110 20 C -0.027 4.027 21 C -0.079 4.079 22 C -0.081 4.081 23 C -0.205 4.205 24 C -0.056 4.056 25 N -0.188 5.188 26 C -0.033 4.033 27 C -0.066 4.066 28 C -0.150 4.150 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.194 0.806 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.171 0.829 43 H 0.215 0.785 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.817 -22.807 -6.293 24.621 hybrid contribution 1.228 0.091 1.335 1.816 sum 8.046 -22.715 -4.958 24.603 Atomic orbital electron populations 1.69951 1.06026 1.26504 1.51131 1.25009 0.94771 0.99072 0.95589 0.86732 0.79630 0.83536 0.78530 1.20227 1.21431 1.20425 1.21219 0.92869 0.91050 1.50057 0.92755 1.19106 0.93636 0.91062 0.97062 1.21223 0.97841 0.94673 0.96166 1.21555 0.97890 0.95462 0.98871 1.22254 0.95424 0.89662 1.00029 1.61824 1.27771 1.01507 1.34791 1.20346 0.92341 0.86579 1.01100 1.19954 1.08804 1.00720 0.92451 1.22331 0.95816 0.90628 0.99610 1.46135 1.40650 1.22883 1.08555 0.71569 1.77541 1.23628 1.17209 0.92633 1.20332 0.96200 0.92673 0.93446 1.18877 1.04760 0.94508 0.89756 1.21618 0.94527 1.00380 0.91553 1.22031 1.03901 0.96065 0.98497 1.22953 0.94050 0.91412 0.97196 1.67929 1.11994 1.40538 0.98316 1.24230 0.90286 0.91398 0.97418 1.22086 0.96315 0.99398 0.88784 1.21692 0.97585 0.94354 1.01368 0.93091 0.96475 0.96940 0.93118 0.90826 0.91591 0.95191 0.91304 0.90190 0.94054 0.80640 0.85004 0.84879 0.82875 0.78481 0.91703 0.95331 0.91704 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.35 8.45 -34.44 -0.29 -14.64 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.09 16 9 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.61 2.20 -90.51 -0.20 -1.81 16 11 C -0.10 -1.84 5.15 -26.66 -0.14 -1.98 16 12 C 0.05 0.77 5.30 -3.84 -0.02 0.75 16 13 N -0.53 -7.13 2.29 -236.11 -0.54 -7.67 16 14 C 0.12 1.39 4.39 -4.98 -0.02 1.36 16 15 C -0.21 -2.31 4.68 -104.76 -0.49 -2.80 16 16 C 0.06 0.55 11.02 -17.26 -0.19 0.36 16 17 N -0.47 -4.18 7.35 30.42 0.22 -3.95 16 18 H 0.44 2.34 8.96 -182.62 -1.64 0.70 16 19 N -0.29 -3.52 12.71 33.43 0.42 -3.09 16 20 C 0.14 1.77 6.76 -82.77 -0.56 1.21 16 21 C -0.07 -0.97 5.81 -104.75 -0.61 -1.58 16 22 C -0.05 -0.60 9.91 -38.95 -0.39 -0.98 16 23 C -0.19 -1.82 10.10 -39.49 -0.40 -2.21 16 24 C 0.10 1.14 11.17 -17.50 -0.20 0.95 16 25 N -0.48 -6.95 10.35 -12.98 -0.13 -7.09 16 26 C 0.13 1.79 9.98 -17.20 -0.17 1.62 16 27 C 0.06 0.85 5.31 -3.83 -0.02 0.83 16 28 C -0.11 -1.92 5.38 -26.65 -0.14 -2.06 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.92 8.02 -51.93 -0.42 0.51 16 37 H 0.08 0.89 7.65 -51.93 -0.40 0.49 16 38 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.20 2.99 4.62 -52.49 -0.24 2.75 16 44 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 45 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -33.12 375.97 -11.10 -44.21 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.40 Total: 0.48 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -4.06 Total: -18.85 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.71 Total: -48.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.12 -11.10 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569606987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.874 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds