Wall clock time and date at job start Tue Mar 31 2020 14:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99759 * 2 1 4 4 H 1.48500 * 109.47064 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46902 * 119.99984 * 3 2 1 7 7 C 1.37878 * 120.00836 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53099 * 109.52781 * 294.67655 * 10 9 7 12 12 C 1.53034 * 109.29509 * 182.43453 * 11 10 9 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50704 * 109.46918 * 189.99613 * 14 13 12 16 16 C 1.35085 * 126.07552 * 260.02355 * 15 14 13 17 17 N 1.35039 * 107.97769 * 180.02562 * 16 15 14 18 18 H 0.97000 * 125.92941 * 179.97438 * 17 16 15 19 19 N 1.40071 * 108.13877 * 0.02562 * 17 16 15 20 20 C 1.31620 * 108.10963 * 359.71845 * 19 17 16 21 21 C 1.48427 * 126.04107 * 180.25746 * 20 19 17 22 22 C 1.39745 * 120.53192 * 325.21174 * 21 20 19 23 23 C 1.38422 * 118.31377 * 180.02562 * 22 21 20 24 24 C 1.38311 * 119.27682 * 359.97438 * 23 22 21 25 25 N 1.31889 * 121.02973 * 0.02601 * 24 23 22 26 26 C 1.31747 * 121.84809 * 359.65448 * 25 24 23 27 27 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 28 28 C 1.53039 * 109.52227 * 61.74204 * 27 13 12 29 29 H 0.97004 * 120.00513 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47202 * 60.00010 * 9 7 2 31 31 H 1.09001 * 109.47488 * 300.00154 * 9 7 2 32 32 H 1.09002 * 109.52267 * 54.87253 * 10 9 7 33 33 H 1.09007 * 109.48839 * 62.49095 * 11 10 9 34 34 H 1.09009 * 109.50682 * 302.38881 * 11 10 9 35 35 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 36 36 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 37 37 H 1.08994 * 109.47159 * 309.99836 * 14 13 12 38 38 H 1.09006 * 109.47282 * 69.99962 * 14 13 12 39 39 H 1.07995 * 126.01213 * 0.02562 * 16 15 14 40 40 H 1.07993 * 120.84424 * 359.97438 * 22 21 20 41 41 H 1.07994 * 120.35930 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.48487 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.70515 * 180.31875 * 26 25 24 44 44 H 1.08993 * 109.46229 * 181.76227 * 27 13 12 45 45 H 1.09008 * 109.45803 * 301.73838 * 27 13 12 46 46 H 1.08994 * 109.50227 * 60.75933 * 28 27 13 47 47 H 1.08998 * 109.50241 * 180.83988 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6619 -0.0015 11 6 3.0369 -3.6588 -1.3120 12 6 3.9864 -4.8588 -1.3322 13 7 3.2109 -6.1000 -1.2110 14 6 4.0751 -7.2778 -1.3653 15 6 3.2223 -8.5148 -1.4812 16 6 2.9560 -9.3931 -0.4900 17 7 2.1594 -10.3605 -0.9932 18 1 1.8115 -11.1228 -0.5045 19 7 1.9237 -10.0727 -2.3436 20 6 2.5575 -8.9582 -2.6411 21 6 2.5722 -8.2888 -3.9657 22 6 2.5529 -9.0425 -5.1423 23 6 2.5683 -8.3709 -6.3526 24 6 2.6014 -6.9882 -6.3585 25 7 2.6189 -6.3038 -5.2312 26 6 2.5991 -6.8991 -4.0561 27 6 2.4795 -6.1470 0.0615 28 6 1.4851 -4.9853 0.1231 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.9308 -3.5550 0.8394 33 1 3.6138 -2.7369 -1.3862 34 1 2.3475 -3.7260 -2.1537 35 1 4.6843 -4.7837 -0.4983 36 1 4.5411 -4.8673 -2.2704 37 1 4.6810 -7.1685 -2.2647 38 1 4.7274 -7.3662 -0.4964 39 1 3.3167 -9.3324 0.5261 40 1 2.5275 -10.1216 -5.1082 41 1 2.5538 -8.9206 -7.2821 42 1 2.6139 -6.4608 -7.3008 43 1 2.6093 -6.3044 -3.1546 44 1 1.9400 -7.0911 0.1356 45 1 3.1845 -6.0657 0.8889 46 1 0.7715 -5.0733 -0.6959 47 1 0.9530 -5.0118 1.0740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569606987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:47 Heat of formation + Delta-G solvation = 81.698625 kcal Electronic energy + Delta-G solvation = -27705.620905 eV Core-core repulsion = 24081.340654 eV Total energy + Delta-G solvation = -3624.280251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32219 -40.66231 -39.90445 -36.32464 -34.55004 -34.17765 -32.82765 -31.94267 -31.49110 -30.82887 -29.41732 -26.74351 -25.10135 -24.81376 -24.29651 -23.82923 -22.19052 -21.74301 -20.69201 -20.37028 -18.68381 -18.34762 -17.87745 -17.08985 -16.80575 -16.45466 -16.31686 -15.87552 -15.47757 -15.34503 -15.07651 -14.71420 -14.67079 -14.53467 -14.15548 -14.07745 -13.90838 -13.75289 -13.55475 -13.13980 -12.95755 -12.75973 -12.63830 -12.47054 -12.26251 -12.13619 -11.94454 -11.70069 -11.59103 -11.23283 -11.19075 -10.84153 -10.64267 -10.53201 -10.48215 -10.31352 -9.73612 -9.39674 -9.06298 -8.13843 -6.23400 -0.05402 0.40218 1.01146 1.41171 1.44518 1.51813 1.75681 1.97497 2.44477 2.97318 3.17516 3.20220 3.44676 3.85285 3.86843 4.04281 4.05022 4.12407 4.13049 4.19326 4.23804 4.29599 4.43341 4.49584 4.62655 4.69259 4.73512 4.75096 4.83293 4.86065 4.91379 5.04671 5.07894 5.09911 5.17731 5.18838 5.23888 5.37472 5.43478 5.49714 5.53059 5.54323 5.62861 5.86673 5.88612 5.94496 6.26358 6.30282 6.35451 6.43931 6.66676 6.93188 7.14904 7.44894 8.98028 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.003192 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.246217 B = 8771.164627 C = 9983.023940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.034 3.966 10 C -0.071 4.071 11 C -0.093 4.093 12 C 0.068 3.932 13 N -0.544 5.544 14 C 0.133 3.867 15 C -0.232 4.232 16 C 0.084 3.916 17 N -0.462 5.462 18 H 0.455 0.545 19 N -0.316 5.316 20 C 0.122 3.878 21 C -0.084 4.084 22 C -0.060 4.060 23 C -0.171 4.171 24 C 0.089 3.911 25 N -0.515 5.515 26 C 0.104 3.896 27 C 0.074 3.926 28 C -0.107 4.107 29 H 0.261 0.739 30 H -0.018 1.018 31 H -0.016 1.016 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.216 0.784 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.043 0.957 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.146 -24.814 -5.163 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.081 0.919 9 C -0.003 4.003 10 C -0.090 4.090 11 C -0.131 4.131 12 C -0.060 4.060 13 N -0.269 5.269 14 C 0.005 3.995 15 C -0.244 4.244 16 C -0.064 4.064 17 N -0.171 5.171 18 H 0.303 0.697 19 N -0.140 5.140 20 C -0.043 4.043 21 C -0.088 4.088 22 C -0.087 4.087 23 C -0.190 4.190 24 C -0.068 4.068 25 N -0.224 5.224 26 C -0.054 4.054 27 C -0.053 4.053 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.000 1.000 31 H 0.002 0.998 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.233 0.767 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.195 0.805 43 H 0.201 0.799 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.946 -24.751 -5.970 26.987 hybrid contribution 0.491 0.617 1.206 1.441 sum 9.437 -24.134 -4.764 26.348 Atomic orbital electron populations 1.70106 1.07880 1.27524 1.52334 1.25971 0.95664 1.03270 0.95155 0.85579 0.78309 0.78454 0.79196 1.19199 1.21200 1.19061 1.21643 0.93452 0.92064 1.49403 0.91927 1.19005 0.94071 0.93341 0.93913 1.21058 0.96800 0.93979 0.97170 1.21401 0.97820 0.97019 0.96892 1.22020 0.94344 0.88476 1.01148 1.61730 1.28579 1.01912 1.34685 1.20280 0.92041 0.85332 1.01798 1.20046 1.09992 1.01544 0.92776 1.22875 0.93934 0.89079 1.00540 1.46191 1.39992 1.23310 1.07626 0.69746 1.77466 1.24513 1.17535 0.94522 1.20445 0.96912 0.93104 0.93852 1.18994 1.04674 0.94143 0.90960 1.21883 0.94254 1.01077 0.91518 1.22388 1.01528 0.95559 0.99518 1.23429 0.93757 0.92475 0.97159 1.67852 1.13250 1.42008 0.99296 1.24028 0.92205 0.92062 0.97136 1.21936 0.95813 0.98050 0.89549 1.21590 0.97945 0.94406 1.00567 0.93051 0.99964 0.99806 0.92834 0.92599 0.93929 0.93899 0.90277 0.90625 0.91858 0.76744 0.83662 0.81278 0.80464 0.79907 0.90107 0.93699 0.93794 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -30.35 8.45 25.60 0.22 -30.13 16 8 H 0.06 3.42 7.08 -2.91 -0.02 3.40 16 9 C 0.03 1.83 4.45 29.85 0.13 1.96 16 10 C -0.07 -2.95 2.20 -10.72 -0.02 -2.97 16 11 C -0.09 -3.54 5.15 30.64 0.16 -3.38 16 12 C 0.07 1.90 5.30 86.32 0.46 2.36 16 13 N -0.54 -13.89 2.29 -900.91 -2.06 -15.95 16 14 C 0.13 2.66 4.39 85.56 0.38 3.04 16 15 C -0.23 -4.65 4.68 -19.95 -0.09 -4.74 16 16 C 0.08 1.16 11.02 83.47 0.92 2.08 16 17 N -0.46 -6.88 7.35 -57.68 -0.42 -7.30 16 18 H 0.46 3.51 8.96 -213.34 -1.91 1.60 16 19 N -0.32 -7.30 12.71 -48.15 -0.61 -7.91 16 20 C 0.12 2.97 6.76 42.53 0.29 3.26 16 21 C -0.08 -2.16 5.81 -19.94 -0.12 -2.27 16 22 C -0.06 -1.28 9.91 22.68 0.22 -1.05 16 23 C -0.17 -3.05 10.10 22.33 0.23 -2.82 16 24 C 0.09 1.94 11.17 84.70 0.95 2.89 16 25 N -0.52 -15.29 10.35 -194.97 -2.02 -17.30 16 26 C 0.10 3.05 9.98 84.96 0.85 3.89 16 27 C 0.07 1.90 5.31 86.32 0.46 2.36 16 28 C -0.11 -3.72 5.38 30.65 0.16 -3.56 16 29 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 30 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 31 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 2.27 7.05 -2.38 -0.02 2.25 16 34 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 2.08 8.02 -2.39 -0.02 2.06 16 37 H 0.08 1.58 7.65 -2.39 -0.02 1.57 16 38 H 0.06 1.00 8.12 -2.38 -0.02 0.98 16 39 H 0.22 1.16 8.06 -2.91 -0.02 1.13 16 40 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 42 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.18 5.77 4.62 -2.91 -0.01 5.75 16 44 H 0.08 1.85 6.44 -2.39 -0.02 1.84 16 45 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -75.90 375.97 1.91 -73.99 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.93 Total: 14.69 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 5.64 Total: -28.85 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -4.83 Total: -107.09 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.90 1.91 -73.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569606987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.685 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds