Wall clock time and date at job start Tue Mar 31 2020 14:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99736 * 2 1 4 4 C 1.50704 * 109.46791 * 66.04462 * 3 2 1 5 5 H 1.08005 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00135 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00195 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99888 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.46947 * 89.99684 * 8 6 4 10 10 H 1.48502 * 109.47204 * 209.99756 * 8 6 4 11 11 H 1.48500 * 109.46868 * 329.99765 * 8 6 4 12 12 C 1.46902 * 110.99940 * 236.05205 * 2 1 3 13 13 C 1.53006 * 109.46747 * 199.84750 * 12 2 1 14 14 H 1.09005 * 109.47311 * 300.46497 * 13 12 2 15 15 O 1.42902 * 109.46792 * 60.46176 * 13 12 2 16 16 C 1.52994 * 109.47087 * 180.46265 * 13 12 2 17 17 N 1.46508 * 109.47111 * 180.02562 * 16 13 12 18 18 C 1.39668 * 119.99746 * 179.97438 * 17 16 13 19 19 C 1.38973 * 120.04768 * 0.02562 * 18 17 16 20 20 C 1.38113 * 120.03318 * 179.97438 * 19 18 17 21 21 C 1.38213 * 120.13273 * 359.74633 * 20 19 18 22 22 C 1.38780 * 120.08978 * 0.50796 * 21 20 19 23 23 O 1.35891 * 120.02040 * 179.76829 * 22 21 20 24 24 C 1.42904 * 116.99859 * 359.72454 * 23 22 21 25 25 C 1.53000 * 109.46861 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.47393 * 65.00000 * 25 24 23 27 27 C 1.38615 * 119.96137 * 359.49283 * 22 21 20 28 28 H 1.09004 * 109.47149 * 188.76966 * 1 2 3 29 29 H 1.08994 * 109.47447 * 308.77016 * 1 2 3 30 30 H 1.09008 * 109.47431 * 68.77769 * 1 2 3 31 31 H 1.09000 * 109.46779 * 186.04175 * 3 2 1 32 32 H 1.08994 * 109.47054 * 306.05296 * 3 2 1 33 33 H 0.96999 * 119.99838 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47329 * 79.85106 * 12 2 1 35 35 H 1.08997 * 109.47232 * 319.84340 * 12 2 1 36 36 H 0.96693 * 114.00141 * 60.00549 * 15 13 12 37 37 H 1.09002 * 109.47185 * 59.99920 * 16 13 12 38 38 H 1.09005 * 109.46923 * 299.99830 * 16 13 12 39 39 H 0.96995 * 120.00023 * 0.02562 * 17 16 13 40 40 H 1.08005 * 119.98467 * 0.02562 * 19 18 17 41 41 H 1.08005 * 119.93776 * 180.02562 * 20 19 18 42 42 H 1.07993 * 119.96140 * 180.27736 * 21 20 19 43 43 H 1.09005 * 109.47176 * 299.99609 * 24 23 22 44 44 H 1.08991 * 109.47266 * 60.00214 * 24 23 22 45 45 H 1.09004 * 109.47012 * 184.99816 * 25 24 23 46 46 H 1.08994 * 109.47389 * 304.99709 * 25 24 23 47 47 H 1.08002 * 120.06511 * 180.23260 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0744 1.5111 2.0488 6 6 2.0274 3.3491 1.5290 7 7 1.7149 3.9386 2.6624 8 14 3.0006 4.2759 0.2315 9 1 2.0640 4.9804 -0.6804 10 1 3.8877 5.2669 0.8921 11 1 3.8237 3.3172 -0.5485 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1665 -0.8557 14 1 4.0464 -0.2704 -0.7027 15 8 3.4945 -1.9796 0.3184 16 6 3.9970 -1.9542 -2.0454 17 7 5.3847 -2.3383 -1.7752 18 6 6.1038 -3.0703 -2.7227 19 6 5.5041 -3.4344 -3.9223 20 6 6.2157 -4.1577 -4.8593 21 6 7.5266 -4.5169 -4.6092 22 6 8.1291 -4.1608 -3.4108 23 8 9.4167 -4.5187 -3.1643 24 6 10.0881 -5.2660 -4.1806 25 6 11.5161 -5.5754 -3.7267 26 9 11.4785 -6.4186 -2.6110 27 6 7.4186 -3.4348 -2.4677 28 1 -0.3634 -1.0157 0.1567 29 1 -0.3634 0.6435 0.8012 30 1 -0.3634 0.3720 -0.9580 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8308 33 1 1.9894 4.8547 2.8244 34 1 1.9566 -0.1524 -2.0378 35 1 1.3924 -1.6622 -1.2825 36 1 2.9805 -2.7960 0.2534 37 1 3.9591 -1.3340 -2.9410 38 1 3.3955 -2.8504 -2.1984 39 1 5.8038 -2.0849 -0.9380 40 1 4.4814 -3.1507 -4.1224 41 1 5.7482 -4.4395 -5.7913 42 1 8.0819 -5.0787 -5.3457 43 1 9.5536 -6.1993 -4.3585 44 1 10.1173 -4.6830 -5.1010 45 1 12.0560 -6.0672 -4.5359 46 1 12.0229 -4.6470 -3.4636 47 1 7.8870 -3.1535 -1.5361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572394568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:41 Heat of formation + Delta-G solvation = -103.180652 kcal Electronic energy + Delta-G solvation = -26851.088218 eV Core-core repulsion = 22755.729024 eV Total energy + Delta-G solvation = -4095.359194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.02057 -40.34962 -38.77484 -37.77483 -35.89899 -34.62130 -32.47072 -31.82348 -30.89909 -29.56868 -28.68803 -27.92805 -25.93128 -24.03243 -23.49857 -22.85497 -21.65549 -21.15765 -20.06865 -18.57303 -17.16675 -17.07657 -16.83315 -16.65097 -16.11491 -15.94258 -15.79197 -15.53379 -15.29311 -15.15876 -14.65966 -14.45240 -14.15015 -13.84034 -13.71772 -13.62423 -13.16721 -13.06699 -12.81449 -12.51032 -12.28551 -11.91550 -11.79732 -11.68172 -11.59079 -11.42695 -11.35057 -11.12090 -11.03443 -10.83994 -10.71053 -10.15949 -10.12947 -9.91419 -9.77534 -9.25766 -8.59135 -8.49693 -7.56460 -7.42115 -6.06189 -4.03307 1.32811 1.45873 2.67053 3.25674 3.33866 3.34429 3.36271 3.72158 4.03569 4.24909 4.39754 4.42719 4.43112 4.58517 4.64838 4.68671 4.84077 4.96969 5.01301 5.10203 5.13785 5.20517 5.26727 5.28220 5.37397 5.42703 5.46726 5.51043 5.77435 5.81868 6.01015 6.10579 6.14666 6.16475 6.21584 6.35555 6.41562 6.62718 6.79668 6.91717 7.11504 7.24755 7.56312 7.63396 7.80825 7.94877 7.98732 8.63793 9.02842 9.55131 11.07005 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.002061 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.887072 B =13582.022026 C =14275.591508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.161 3.839 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.025 3.975 13 C 0.103 3.897 14 H 0.106 0.894 15 O -0.537 6.537 16 C 0.092 3.908 17 N -0.732 5.732 18 C 0.259 3.741 19 C -0.234 4.234 20 C -0.034 4.034 21 C -0.272 4.272 22 C 0.172 3.828 23 O -0.312 6.312 24 C 0.026 3.974 25 C 0.066 3.934 26 F -0.211 7.211 27 C -0.231 4.231 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.009 0.991 31 H 0.027 0.973 32 H -0.018 1.018 33 H 0.264 0.736 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.367 0.633 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.408 0.592 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.468 -19.727 -18.896 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.105 4.105 13 C 0.043 3.957 14 H 0.124 0.876 15 O -0.340 6.340 16 C -0.033 4.033 17 N -0.360 5.360 18 C 0.153 3.847 19 C -0.257 4.257 20 C -0.053 4.053 21 C -0.293 4.293 22 C 0.127 3.873 23 O -0.226 6.226 24 C -0.049 4.049 25 C 0.012 3.988 26 F -0.192 7.192 27 C -0.254 4.254 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.000 1.000 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.213 0.787 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.244 0.756 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.932 -19.203 -17.987 29.772 hybrid contribution -0.050 0.637 -1.597 1.720 sum 13.882 -18.566 -19.584 30.347 Atomic orbital electron populations 1.22276 0.87981 1.00585 1.00400 1.61848 1.07152 1.16371 1.39015 1.20238 0.95165 0.84034 0.97060 1.21013 1.35520 0.97108 1.00910 0.90069 1.24907 0.95778 0.97403 0.95321 1.69890 1.46867 1.13243 1.23832 0.86871 0.80633 0.80085 0.82165 1.20398 1.21082 1.19322 1.22653 0.95435 0.98717 0.93674 1.22119 0.96161 0.93651 0.83789 0.87648 1.86684 1.73634 1.36141 1.37559 1.22122 0.82574 0.99221 0.99397 1.44661 1.12520 1.59119 1.19745 1.17472 0.89669 0.88761 0.88785 1.20573 1.01340 1.08779 0.94958 1.20616 0.92965 0.93963 0.97758 1.20889 0.97819 1.12144 0.98461 1.18545 0.82679 0.92982 0.93139 1.86070 1.23579 1.69418 1.43494 1.23438 0.93181 0.96779 0.91551 1.22064 0.95651 0.94370 0.86752 1.92816 1.97528 1.73413 1.55425 1.19669 0.93899 1.10011 1.01868 0.93318 0.89800 0.97233 0.95478 1.00023 0.92654 0.94663 0.91413 0.78715 0.91421 0.91886 0.75616 0.86054 0.86050 0.86204 0.90749 0.90152 0.88587 0.89567 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.37 60.06 0.56 1.22 16 2 N -0.52 -10.45 4.56 -244.36 -1.11 -11.57 16 3 C 0.16 3.85 3.62 -4.97 -0.02 3.83 16 4 C -0.51 -14.40 8.94 -34.44 -0.31 -14.71 16 5 H 0.08 2.52 7.41 -52.48 -0.39 2.13 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 8 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.95 16 12 C 0.03 0.38 4.66 -3.82 -0.02 0.36 16 13 C 0.10 1.45 3.12 -26.73 -0.08 1.37 16 14 H 0.11 1.76 6.78 -51.93 -0.35 1.40 16 15 O -0.54 -8.05 12.95 -35.23 -0.46 -8.51 16 16 C 0.09 1.01 4.57 -4.04 -0.02 1.00 16 17 N -0.73 -8.51 5.62 -58.64 -0.33 -8.84 16 18 C 0.26 3.07 6.65 -83.81 -0.56 2.51 16 19 C -0.23 -2.51 9.31 -39.36 -0.37 -2.88 16 20 C -0.03 -0.33 10.03 -39.64 -0.40 -0.72 16 21 C -0.27 -2.65 9.04 -39.39 -0.36 -3.01 16 22 C 0.17 1.97 6.68 -39.24 -0.26 1.70 16 23 O -0.31 -3.37 10.13 -19.40 -0.20 -3.56 16 24 C 0.03 0.17 5.20 37.16 0.19 0.37 16 25 C 0.07 0.36 7.92 37.16 0.29 0.65 16 26 F -0.21 -1.99 17.35 2.25 0.04 -1.96 16 27 C -0.23 -2.81 9.83 -39.24 -0.39 -3.19 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.76 6.66 -51.93 -0.35 1.41 16 30 H 0.01 0.16 8.13 -51.92 -0.42 -0.26 16 31 H 0.03 0.66 5.69 -51.93 -0.30 0.36 16 32 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.04 0.52 8.00 -51.93 -0.42 0.11 16 35 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.37 4.18 9.04 45.56 0.41 4.60 16 37 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 38 H 0.06 0.61 7.95 -51.93 -0.41 0.20 16 39 H 0.41 4.88 8.36 -40.82 -0.34 4.54 16 40 H 0.12 1.16 6.73 -52.48 -0.35 0.81 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.88 6.29 -52.49 -0.33 0.55 16 43 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 44 H 0.08 0.36 7.65 -51.93 -0.40 -0.03 16 45 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -33.93 385.85 -8.49 -42.43 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.54 Total: 5.84 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.82 Total: -9.64 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.67 Total: -47.25 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.65 Total: -12.07 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.93 -8.49 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572394568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.752 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds