Wall clock time and date at job start Tue Mar 31 2020 14:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99736 * 2 1 4 4 C 1.50704 * 109.46791 * 66.04462 * 3 2 1 5 5 H 1.08005 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00135 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00195 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99888 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.46947 * 89.99684 * 8 6 4 10 10 H 1.48502 * 109.47204 * 209.99756 * 8 6 4 11 11 H 1.48500 * 109.46868 * 329.99765 * 8 6 4 12 12 C 1.46902 * 110.99940 * 236.05205 * 2 1 3 13 13 C 1.53006 * 109.46747 * 199.84750 * 12 2 1 14 14 H 1.09005 * 109.47311 * 300.46497 * 13 12 2 15 15 O 1.42902 * 109.46792 * 60.46176 * 13 12 2 16 16 C 1.52994 * 109.47087 * 180.46265 * 13 12 2 17 17 N 1.46508 * 109.47111 * 180.02562 * 16 13 12 18 18 C 1.39668 * 119.99746 * 179.97438 * 17 16 13 19 19 C 1.38973 * 120.04768 * 0.02562 * 18 17 16 20 20 C 1.38113 * 120.03318 * 179.97438 * 19 18 17 21 21 C 1.38213 * 120.13273 * 359.74633 * 20 19 18 22 22 C 1.38780 * 120.08978 * 0.50796 * 21 20 19 23 23 O 1.35891 * 120.02040 * 179.76829 * 22 21 20 24 24 C 1.42904 * 116.99859 * 359.72454 * 23 22 21 25 25 C 1.53000 * 109.46861 * 180.02562 * 24 23 22 26 26 F 1.39905 * 109.47393 * 65.00000 * 25 24 23 27 27 C 1.38615 * 119.96137 * 359.49283 * 22 21 20 28 28 H 1.09004 * 109.47149 * 188.76966 * 1 2 3 29 29 H 1.08994 * 109.47447 * 308.77016 * 1 2 3 30 30 H 1.09008 * 109.47431 * 68.77769 * 1 2 3 31 31 H 1.09000 * 109.46779 * 186.04175 * 3 2 1 32 32 H 1.08994 * 109.47054 * 306.05296 * 3 2 1 33 33 H 0.96999 * 119.99838 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47329 * 79.85106 * 12 2 1 35 35 H 1.08997 * 109.47232 * 319.84340 * 12 2 1 36 36 H 0.96693 * 114.00141 * 60.00549 * 15 13 12 37 37 H 1.09002 * 109.47185 * 59.99920 * 16 13 12 38 38 H 1.09005 * 109.46923 * 299.99830 * 16 13 12 39 39 H 0.96995 * 120.00023 * 0.02562 * 17 16 13 40 40 H 1.08005 * 119.98467 * 0.02562 * 19 18 17 41 41 H 1.08005 * 119.93776 * 180.02562 * 20 19 18 42 42 H 1.07993 * 119.96140 * 180.27736 * 21 20 19 43 43 H 1.09005 * 109.47176 * 299.99609 * 24 23 22 44 44 H 1.08991 * 109.47266 * 60.00214 * 24 23 22 45 45 H 1.09004 * 109.47012 * 184.99816 * 25 24 23 46 46 H 1.08994 * 109.47389 * 304.99709 * 25 24 23 47 47 H 1.08002 * 120.06511 * 180.23260 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0744 1.5111 2.0488 6 6 2.0274 3.3491 1.5290 7 7 1.7149 3.9386 2.6624 8 14 3.0006 4.2759 0.2315 9 1 2.0640 4.9804 -0.6804 10 1 3.8877 5.2669 0.8921 11 1 3.8237 3.3172 -0.5485 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1665 -0.8557 14 1 4.0464 -0.2704 -0.7027 15 8 3.4945 -1.9796 0.3184 16 6 3.9970 -1.9542 -2.0454 17 7 5.3847 -2.3383 -1.7752 18 6 6.1038 -3.0703 -2.7227 19 6 5.5041 -3.4344 -3.9223 20 6 6.2157 -4.1577 -4.8593 21 6 7.5266 -4.5169 -4.6092 22 6 8.1291 -4.1608 -3.4108 23 8 9.4167 -4.5187 -3.1643 24 6 10.0881 -5.2660 -4.1806 25 6 11.5161 -5.5754 -3.7267 26 9 11.4785 -6.4186 -2.6110 27 6 7.4186 -3.4348 -2.4677 28 1 -0.3634 -1.0157 0.1567 29 1 -0.3634 0.6435 0.8012 30 1 -0.3634 0.3720 -0.9580 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8308 33 1 1.9894 4.8547 2.8244 34 1 1.9566 -0.1524 -2.0378 35 1 1.3924 -1.6622 -1.2825 36 1 2.9805 -2.7960 0.2534 37 1 3.9591 -1.3340 -2.9410 38 1 3.3955 -2.8504 -2.1984 39 1 5.8038 -2.0849 -0.9380 40 1 4.4814 -3.1507 -4.1224 41 1 5.7482 -4.4395 -5.7913 42 1 8.0819 -5.0787 -5.3457 43 1 9.5536 -6.1993 -4.3585 44 1 10.1173 -4.6830 -5.1010 45 1 12.0560 -6.0672 -4.5359 46 1 12.0229 -4.6470 -3.4636 47 1 7.8870 -3.1535 -1.5361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572394568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:40 Heat of formation + Delta-G solvation = -129.629519 kcal Electronic energy + Delta-G solvation = -26852.235127 eV Core-core repulsion = 22755.729024 eV Total energy + Delta-G solvation = -4096.506102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.60014 -41.09285 -39.78944 -38.76815 -37.25657 -35.53242 -34.60296 -32.44076 -31.85821 -30.46519 -30.00418 -29.35197 -27.07983 -25.24992 -24.39485 -23.86456 -22.75529 -21.93799 -21.59815 -19.31534 -19.05062 -17.95567 -17.61450 -17.34284 -17.17810 -16.92973 -16.58616 -16.41741 -16.26733 -16.08740 -15.91883 -15.79078 -15.39253 -14.98537 -14.73908 -14.51612 -14.44948 -14.39434 -14.00492 -13.83659 -13.32353 -13.20883 -13.01644 -12.66123 -12.63426 -12.54132 -12.34531 -12.26205 -12.14496 -11.92642 -11.83425 -11.66437 -11.65007 -11.45977 -10.92292 -10.85004 -10.80029 -9.28346 -8.96568 -8.37556 -8.29321 -6.32072 0.54665 0.67976 1.31059 1.33960 1.43903 2.01637 2.32234 2.53607 2.94153 3.03267 3.20129 3.58428 3.63078 3.83869 3.85487 3.99769 4.03367 4.04986 4.23418 4.24409 4.28535 4.35904 4.36613 4.42758 4.52106 4.58010 4.59264 4.66531 4.68481 4.72416 4.85233 4.92371 4.97889 5.00918 5.12257 5.21749 5.33244 5.40391 5.54765 5.61573 5.68656 5.97665 6.34069 6.37902 6.49399 6.65183 6.73022 6.74617 6.99169 7.30981 8.87533 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.002061 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.887072 B =13582.022026 C =14275.591508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.173 3.827 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.004 3.996 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.250 1.250 12 C 0.026 3.974 13 C 0.110 3.890 14 H 0.074 0.926 15 O -0.559 6.559 16 C 0.106 3.894 17 N -0.738 5.738 18 C 0.247 3.753 19 C -0.243 4.243 20 C -0.033 4.033 21 C -0.272 4.272 22 C 0.160 3.840 23 O -0.336 6.336 24 C 0.018 3.982 25 C 0.059 3.941 26 F -0.237 7.237 27 C -0.257 4.257 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.024 0.976 31 H 0.026 0.974 32 H -0.014 1.014 33 H 0.266 0.734 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.383 0.617 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.402 0.598 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.136 0.864 46 H 0.091 0.909 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 -21.189 -22.843 34.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.265 5.265 3 C 0.045 3.955 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.770 3.230 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.174 1.174 12 C -0.103 4.103 13 C 0.050 3.950 14 H 0.092 0.908 15 O -0.365 6.365 16 C -0.019 4.019 17 N -0.366 5.366 18 C 0.142 3.858 19 C -0.265 4.265 20 C -0.052 4.052 21 C -0.292 4.292 22 C 0.115 3.885 23 O -0.251 6.251 24 C -0.057 4.057 25 C 0.005 3.995 26 F -0.219 7.219 27 C -0.281 4.281 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.004 0.996 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.231 0.769 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.237 0.763 40 H 0.153 0.847 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.153 0.847 46 H 0.109 0.891 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.605 -20.708 -21.961 33.532 hybrid contribution -0.267 0.969 -0.328 1.058 sum 14.338 -19.739 -22.289 33.046 Atomic orbital electron populations 1.22227 0.87200 1.01754 0.99698 1.61708 1.08089 1.14438 1.42295 1.19950 0.95077 0.86105 0.94338 1.21290 1.34596 0.97364 1.01997 0.94574 1.25882 0.97077 0.98569 0.97767 1.70055 1.48703 1.13857 1.26345 0.85723 0.79263 0.78725 0.79267 1.19014 1.20825 1.17380 1.22777 0.96198 0.99319 0.92024 1.21950 0.95292 0.93092 0.84710 0.90777 1.86646 1.74254 1.37161 1.38466 1.21988 0.82368 0.99699 0.97853 1.44677 1.12810 1.59493 1.19656 1.17611 0.89631 0.89193 0.89377 1.20822 1.02111 1.08963 0.94630 1.21009 0.92811 0.92859 0.98501 1.21212 0.98171 1.11684 0.98169 1.18737 0.83125 0.93038 0.93647 1.86047 1.23516 1.69980 1.45513 1.23765 0.93340 0.96964 0.91669 1.22419 0.95503 0.94642 0.86910 1.92760 1.97619 1.74298 1.57173 1.19787 0.94681 1.11471 1.02135 0.90139 0.93683 0.95714 0.95634 0.99617 0.92493 0.93567 0.88018 0.76909 0.90530 0.89744 0.76328 0.84709 0.83104 0.83659 0.90201 0.87720 0.84677 0.89095 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 9.37 127.69 1.20 2.61 16 2 N -0.54 -21.26 4.56 -927.02 -4.22 -25.49 16 3 C 0.17 8.19 3.62 85.56 0.31 8.50 16 4 C -0.51 -30.15 8.94 25.60 0.23 -29.92 16 5 H 0.04 2.38 7.41 -2.91 -0.02 2.35 16 6 C 0.00 0.24 5.47 84.65 0.46 0.70 16 7 N -0.95 -60.28 13.96 21.44 0.30 -59.98 16 8 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.25 -10.93 6.54 99.48 0.65 -10.27 16 12 C 0.03 0.71 4.66 86.30 0.40 1.11 16 13 C 0.11 2.93 3.12 30.59 0.10 3.03 16 14 H 0.07 2.45 6.78 -2.38 -0.02 2.43 16 15 O -0.56 -16.31 12.95 -148.98 -1.93 -18.24 16 16 C 0.11 2.07 4.57 86.38 0.40 2.47 16 17 N -0.74 -16.55 5.62 -339.45 -1.91 -18.45 16 18 C 0.25 5.63 6.65 38.20 0.25 5.88 16 19 C -0.24 -4.60 9.31 22.42 0.21 -4.39 16 20 C -0.03 -0.53 10.03 22.23 0.22 -0.31 16 21 C -0.27 -4.62 9.04 22.39 0.20 -4.42 16 22 C 0.16 3.54 6.68 22.49 0.15 3.69 16 23 O -0.34 -7.09 10.13 -92.33 -0.94 -8.02 16 24 C 0.02 0.20 5.20 71.98 0.37 0.57 16 25 C 0.06 0.54 7.92 71.98 0.57 1.11 16 26 F -0.24 -4.37 17.35 44.97 0.78 -3.59 16 27 C -0.26 -6.32 9.83 22.49 0.22 -6.10 16 28 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.04 1.94 6.66 -2.39 -0.02 1.93 16 30 H 0.02 0.80 8.13 -2.38 -0.02 0.78 16 31 H 0.03 1.23 5.69 -2.39 -0.01 1.21 16 32 H -0.01 -0.64 7.55 -2.39 -0.02 -0.66 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.05 1.21 8.00 -2.39 -0.02 1.19 16 35 H 0.10 2.14 7.94 -2.39 -0.02 2.12 16 36 H 0.38 8.08 9.04 -74.06 -0.67 7.41 16 37 H 0.08 1.39 7.95 -2.39 -0.02 1.37 16 38 H 0.08 1.32 7.95 -2.38 -0.02 1.30 16 39 H 0.40 9.78 8.36 -92.71 -0.77 9.01 16 40 H 0.14 2.11 6.73 -2.91 -0.02 2.09 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.61 6.29 -2.91 -0.02 1.59 16 43 H 0.08 0.79 7.67 -2.38 -0.02 0.77 16 44 H 0.10 0.64 7.65 -2.39 -0.02 0.62 16 45 H 0.14 0.14 8.14 -2.38 -0.02 0.13 16 46 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -77.38 385.85 -1.25 -78.63 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.51 Total: 24.22 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 5.29 Total: -15.49 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -5.83 Total: -103.92 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -2.87 Total: -26.26 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -77.38 -1.25 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572394568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.999 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds