Wall clock time and date at job start Tue Mar 31 2020 14:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00522 * 2 1 4 4 C 1.50703 * 109.47113 * 293.95699 * 3 2 1 5 5 H 1.07991 * 119.99702 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99849 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00257 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99867 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47016 * 60.00374 * 8 6 4 10 10 H 1.48498 * 109.47274 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47502 * 300.00240 * 8 6 4 12 12 C 1.46902 * 110.99719 * 123.95795 * 2 1 3 13 13 C 1.53004 * 109.46941 * 164.01012 * 12 2 1 14 14 H 1.08994 * 109.47478 * 58.50454 * 13 12 2 15 15 O 1.42899 * 109.46758 * 298.50593 * 13 12 2 16 16 C 1.53000 * 109.46943 * 178.50865 * 13 12 2 17 17 N 1.46504 * 109.47087 * 184.99982 * 16 13 12 18 18 C 1.39666 * 119.99917 * 180.02562 * 17 16 13 19 19 C 1.38974 * 120.04859 * 0.02562 * 18 17 16 20 20 C 1.38112 * 120.03538 * 179.97438 * 19 18 17 21 21 C 1.38214 * 120.12877 * 359.74407 * 20 19 18 22 22 C 1.38772 * 120.09394 * 0.50986 * 21 20 19 23 23 O 1.35897 * 120.02139 * 179.76720 * 22 21 20 24 24 C 1.42896 * 116.99628 * 359.72356 * 23 22 21 25 25 C 1.53008 * 109.46849 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.47312 * 65.00167 * 25 24 23 27 27 C 1.38622 * 119.96123 * 359.49403 * 22 21 20 28 28 H 1.09005 * 109.46723 * 301.53224 * 1 2 3 29 29 H 1.09001 * 109.47027 * 61.52449 * 1 2 3 30 30 H 1.08993 * 109.47613 * 181.52920 * 1 2 3 31 31 H 1.09000 * 109.47014 * 53.95569 * 3 2 1 32 32 H 1.09002 * 109.47552 * 173.95173 * 3 2 1 33 33 H 0.96995 * 120.00283 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47409 * 44.00872 * 12 2 1 35 35 H 1.09004 * 109.46865 * 284.00469 * 12 2 1 36 36 H 0.96703 * 113.99838 * 299.99518 * 15 13 12 37 37 H 1.09004 * 109.47526 * 64.99694 * 16 13 12 38 38 H 1.09003 * 109.47170 * 304.99513 * 16 13 12 39 39 H 0.96998 * 120.00064 * 359.97438 * 17 16 13 40 40 H 1.08003 * 119.97997 * 359.95643 * 19 18 17 41 41 H 1.08002 * 119.93359 * 180.02562 * 20 19 18 42 42 H 1.07998 * 119.95460 * 180.27501 * 21 20 19 43 43 H 1.08998 * 109.47483 * 299.99401 * 24 23 22 44 44 H 1.08996 * 109.47394 * 60.00612 * 24 23 22 45 45 H 1.08994 * 109.47014 * 185.00077 * 25 24 23 46 46 H 1.08996 * 109.47152 * 305.00041 * 25 24 23 47 47 H 1.08003 * 120.06468 * 180.23294 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0269 3.3494 -1.5284 7 7 2.7122 4.0018 -0.6149 8 14 1.5832 4.1868 -3.1381 9 1 0.1061 4.2231 -3.2864 10 1 2.1153 5.5731 -3.1381 11 1 2.1757 3.4297 -4.2699 12 6 1.9954 -0.7661 1.1376 13 6 3.4728 -1.0841 0.8983 14 1 4.0282 -0.1551 0.7697 15 8 3.6032 -1.8840 -0.2786 16 6 4.0306 -1.8497 2.0998 17 7 5.4714 -2.0499 1.9251 18 6 6.2053 -2.7293 2.9000 19 6 5.5697 -3.2164 4.0359 20 6 6.2956 -3.8887 4.9995 21 6 7.6540 -4.0836 4.8347 22 6 8.2950 -3.5949 3.7051 23 8 9.6315 -3.7832 3.5468 24 6 10.3149 -4.4875 4.5855 25 6 11.7997 -4.6004 4.2336 26 9 12.3724 -3.3242 4.2131 27 6 7.5702 -2.9195 2.7355 28 1 -0.3633 0.5375 0.8760 29 1 -0.3633 0.4900 -0.9033 30 1 -0.3634 -1.0272 0.0274 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1083 33 1 2.9869 4.9178 -0.7769 34 1 1.4355 -1.6957 1.2398 35 1 1.8933 -0.1782 2.0498 36 1 3.1332 -2.7279 -0.2346 37 1 3.5358 -2.8180 2.1753 38 1 3.8511 -1.2779 3.0103 39 1 5.9155 -1.7112 1.1321 40 1 4.5077 -3.0689 4.1653 41 1 5.8000 -4.2669 5.8814 42 1 8.2180 -4.6136 5.5879 43 1 10.2047 -3.9461 5.5250 44 1 9.8888 -5.4854 4.6889 45 1 12.3044 -5.2131 4.9805 46 1 11.9064 -5.0623 3.2522 47 1 8.0667 -2.5417 1.8539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572394569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:44 Heat of formation + Delta-G solvation = -107.468288 kcal Electronic energy + Delta-G solvation = -26793.691075 eV Core-core repulsion = 22698.145956 eV Total energy + Delta-G solvation = -4095.545119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.97908 -40.28786 -38.68424 -37.68307 -35.74560 -34.56241 -32.50664 -31.77001 -30.80137 -29.48285 -28.52032 -27.31830 -25.85241 -24.01165 -23.54203 -22.87915 -21.66944 -21.09861 -20.10863 -18.50789 -17.05363 -16.97961 -16.59536 -16.52391 -16.04507 -15.82790 -15.64424 -15.47686 -15.22897 -15.07157 -14.70779 -14.33008 -14.06996 -13.79784 -13.66717 -13.48763 -13.21526 -13.05168 -12.63521 -12.33107 -11.96541 -11.85009 -11.75913 -11.53681 -11.47789 -11.28787 -11.21555 -10.98056 -10.95344 -10.78930 -10.67274 -10.38960 -10.06250 -9.79856 -9.72133 -9.18831 -8.43464 -8.42590 -7.49021 -7.26050 -6.02563 -4.03396 1.39185 1.52498 2.72812 3.34342 3.38365 3.41475 3.44740 3.78626 4.08123 4.29125 4.41385 4.47051 4.57852 4.62507 4.74387 4.74487 4.89193 5.02835 5.12928 5.20682 5.26223 5.28032 5.32367 5.35329 5.46709 5.49527 5.57888 5.64194 5.84474 5.96304 6.04591 6.17374 6.20946 6.29625 6.35463 6.42108 6.48108 6.68655 7.17300 7.23293 7.28113 7.32438 7.70372 7.77946 7.98882 8.06133 8.17166 8.52806 9.03375 9.60558 11.08442 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002012 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.407974 B =13914.048824 C =15092.062981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.028 3.972 13 C 0.103 3.897 14 H 0.110 0.890 15 O -0.539 6.539 16 C 0.093 3.907 17 N -0.732 5.732 18 C 0.260 3.740 19 C -0.234 4.234 20 C -0.034 4.034 21 C -0.273 4.273 22 C 0.172 3.828 23 O -0.312 6.312 24 C 0.027 3.973 25 C 0.067 3.933 26 F -0.210 7.210 27 C -0.231 4.231 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.043 0.957 31 H -0.011 1.011 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.365 0.635 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.407 0.593 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.993 -20.789 13.642 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.102 4.102 13 C 0.043 3.957 14 H 0.128 0.872 15 O -0.342 6.342 16 C -0.032 4.032 17 N -0.359 5.359 18 C 0.154 3.846 19 C -0.256 4.256 20 C -0.053 4.053 21 C -0.294 4.294 22 C 0.126 3.874 23 O -0.226 6.226 24 C -0.049 4.049 25 C 0.012 3.988 26 F -0.192 7.192 27 C -0.255 4.255 28 H 0.029 0.971 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.211 0.789 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.243 0.757 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.513 -20.194 12.909 26.589 hybrid contribution -0.718 0.630 0.195 0.974 sum 10.795 -19.565 13.103 25.904 Atomic orbital electron populations 1.22196 0.88667 0.98940 1.01044 1.62035 1.06650 1.17913 1.38920 1.19782 0.95433 0.81417 0.96639 1.21099 1.34838 0.96810 1.01679 0.91921 1.24992 0.95318 0.97379 0.97010 1.69940 1.38356 1.11522 1.34124 0.86546 0.78624 0.78304 0.83849 1.20330 1.21381 1.20118 1.22595 0.95056 0.98540 0.93971 1.22152 0.95857 0.94345 0.83369 0.87207 1.86688 1.75428 1.33529 1.38529 1.22135 0.81029 1.00172 0.99876 1.44693 1.07433 1.61139 1.22677 1.17479 0.89689 0.89058 0.88407 1.20574 1.00305 1.08767 0.95992 1.20609 0.92963 0.94509 0.97227 1.20877 0.96314 1.12128 1.00075 1.18541 0.81665 0.93639 0.93517 1.86068 1.18795 1.72678 1.45032 1.23432 0.92285 0.97785 0.91447 1.22060 0.90523 0.81619 1.04621 1.92817 1.85951 1.42247 1.98148 1.19671 0.92204 1.11240 1.02361 0.97064 0.90721 0.93817 0.99316 0.95140 0.92876 0.91825 0.94824 0.78942 0.92005 0.91370 0.75676 0.86048 0.86078 0.86244 0.90755 0.90179 0.88626 0.89595 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.32 60.06 0.56 1.32 16 2 N -0.53 -11.10 4.60 -244.37 -1.12 -12.22 16 3 C 0.19 4.95 4.57 -4.98 -0.02 4.93 16 4 C -0.51 -14.27 8.54 -34.44 -0.29 -14.57 16 5 H 0.06 1.76 7.10 -52.49 -0.37 1.38 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.03 0.46 4.63 -3.82 -0.02 0.44 16 13 C 0.10 1.56 3.02 -26.73 -0.08 1.47 16 14 H 0.11 2.01 6.55 -51.93 -0.34 1.67 16 15 O -0.54 -8.45 13.18 -35.23 -0.46 -8.91 16 16 C 0.09 1.11 4.55 -4.04 -0.02 1.09 16 17 N -0.73 -9.13 5.68 -58.64 -0.33 -9.46 16 18 C 0.26 3.26 6.65 -83.81 -0.56 2.71 16 19 C -0.23 -2.66 9.31 -39.35 -0.37 -3.02 16 20 C -0.03 -0.35 10.03 -39.64 -0.40 -0.74 16 21 C -0.27 -2.80 9.04 -39.39 -0.36 -3.15 16 22 C 0.17 2.06 6.68 -39.24 -0.26 1.79 16 23 O -0.31 -3.51 10.13 -19.42 -0.20 -3.71 16 24 C 0.03 0.18 5.20 37.16 0.19 0.38 16 25 C 0.07 0.38 7.93 37.16 0.29 0.67 16 26 F -0.21 -2.10 17.35 2.25 0.04 -2.06 16 27 C -0.23 -2.96 9.83 -39.24 -0.39 -3.34 16 28 H 0.01 0.21 8.13 -51.93 -0.42 -0.22 16 29 H 0.07 1.52 6.90 -51.93 -0.36 1.16 16 30 H 0.04 0.68 7.97 -51.93 -0.41 0.27 16 31 H -0.01 -0.30 8.11 -51.93 -0.42 -0.72 16 32 H 0.03 0.83 6.38 -51.93 -0.33 0.50 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 35 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 36 H 0.36 4.32 9.05 45.56 0.41 4.73 16 37 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 38 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 39 H 0.41 5.24 8.48 -40.82 -0.35 4.89 16 40 H 0.12 1.24 6.73 -52.48 -0.35 0.89 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.93 6.29 -52.49 -0.33 0.60 16 43 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 44 H 0.08 0.38 7.65 -51.93 -0.40 -0.01 16 45 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -33.47 389.37 -8.86 -42.33 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.55 Total: 5.99 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.81 Total: -8.58 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.72 Total: -47.78 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.66 Total: -12.62 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.47 -8.86 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572394569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.140 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds