Wall clock time and date at job start Tue Mar 31 2020 14:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00522 * 2 1 4 4 C 1.50703 * 109.47113 * 293.95699 * 3 2 1 5 5 H 1.07991 * 119.99702 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99849 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00257 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99867 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47016 * 60.00374 * 8 6 4 10 10 H 1.48498 * 109.47274 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47502 * 300.00240 * 8 6 4 12 12 C 1.46902 * 110.99719 * 123.95795 * 2 1 3 13 13 C 1.53004 * 109.46941 * 164.01012 * 12 2 1 14 14 H 1.08994 * 109.47478 * 58.50454 * 13 12 2 15 15 O 1.42899 * 109.46758 * 298.50593 * 13 12 2 16 16 C 1.53000 * 109.46943 * 178.50865 * 13 12 2 17 17 N 1.46504 * 109.47087 * 184.99982 * 16 13 12 18 18 C 1.39666 * 119.99917 * 180.02562 * 17 16 13 19 19 C 1.38974 * 120.04859 * 0.02562 * 18 17 16 20 20 C 1.38112 * 120.03538 * 179.97438 * 19 18 17 21 21 C 1.38214 * 120.12877 * 359.74407 * 20 19 18 22 22 C 1.38772 * 120.09394 * 0.50986 * 21 20 19 23 23 O 1.35897 * 120.02139 * 179.76720 * 22 21 20 24 24 C 1.42896 * 116.99628 * 359.72356 * 23 22 21 25 25 C 1.53008 * 109.46849 * 180.02562 * 24 23 22 26 26 F 1.39896 * 109.47312 * 65.00167 * 25 24 23 27 27 C 1.38622 * 119.96123 * 359.49403 * 22 21 20 28 28 H 1.09005 * 109.46723 * 301.53224 * 1 2 3 29 29 H 1.09001 * 109.47027 * 61.52449 * 1 2 3 30 30 H 1.08993 * 109.47613 * 181.52920 * 1 2 3 31 31 H 1.09000 * 109.47014 * 53.95569 * 3 2 1 32 32 H 1.09002 * 109.47552 * 173.95173 * 3 2 1 33 33 H 0.96995 * 120.00283 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47409 * 44.00872 * 12 2 1 35 35 H 1.09004 * 109.46865 * 284.00469 * 12 2 1 36 36 H 0.96703 * 113.99838 * 299.99518 * 15 13 12 37 37 H 1.09004 * 109.47526 * 64.99694 * 16 13 12 38 38 H 1.09003 * 109.47170 * 304.99513 * 16 13 12 39 39 H 0.96998 * 120.00064 * 359.97438 * 17 16 13 40 40 H 1.08003 * 119.97997 * 359.95643 * 19 18 17 41 41 H 1.08002 * 119.93359 * 180.02562 * 20 19 18 42 42 H 1.07998 * 119.95460 * 180.27501 * 21 20 19 43 43 H 1.08998 * 109.47483 * 299.99401 * 24 23 22 44 44 H 1.08996 * 109.47394 * 60.00612 * 24 23 22 45 45 H 1.08994 * 109.47014 * 185.00077 * 25 24 23 46 46 H 1.08996 * 109.47152 * 305.00041 * 25 24 23 47 47 H 1.08003 * 120.06468 * 180.23294 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0269 3.3494 -1.5284 7 7 2.7122 4.0018 -0.6149 8 14 1.5832 4.1868 -3.1381 9 1 0.1061 4.2231 -3.2864 10 1 2.1153 5.5731 -3.1381 11 1 2.1757 3.4297 -4.2699 12 6 1.9954 -0.7661 1.1376 13 6 3.4728 -1.0841 0.8983 14 1 4.0282 -0.1551 0.7697 15 8 3.6032 -1.8840 -0.2786 16 6 4.0306 -1.8497 2.0998 17 7 5.4714 -2.0499 1.9251 18 6 6.2053 -2.7293 2.9000 19 6 5.5697 -3.2164 4.0359 20 6 6.2956 -3.8887 4.9995 21 6 7.6540 -4.0836 4.8347 22 6 8.2950 -3.5949 3.7051 23 8 9.6315 -3.7832 3.5468 24 6 10.3149 -4.4875 4.5855 25 6 11.7997 -4.6004 4.2336 26 9 12.3724 -3.3242 4.2131 27 6 7.5702 -2.9195 2.7355 28 1 -0.3633 0.5375 0.8760 29 1 -0.3633 0.4900 -0.9033 30 1 -0.3634 -1.0272 0.0274 31 1 1.5612 1.9273 0.8309 32 1 3.0798 1.3443 0.1083 33 1 2.9869 4.9178 -0.7769 34 1 1.4355 -1.6957 1.2398 35 1 1.8933 -0.1782 2.0498 36 1 3.1332 -2.7279 -0.2346 37 1 3.5358 -2.8180 2.1753 38 1 3.8511 -1.2779 3.0103 39 1 5.9155 -1.7112 1.1321 40 1 4.5077 -3.0689 4.1653 41 1 5.8000 -4.2669 5.8814 42 1 8.2180 -4.6136 5.5879 43 1 10.2047 -3.9461 5.5250 44 1 9.8888 -5.4854 4.6889 45 1 12.3044 -5.2131 4.9805 46 1 11.9064 -5.0623 3.2522 47 1 8.0667 -2.5417 1.8539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572394569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:43 Heat of formation + Delta-G solvation = -132.838023 kcal Electronic energy + Delta-G solvation = -26794.791190 eV Core-core repulsion = 22698.145956 eV Total energy + Delta-G solvation = -4096.645234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.60001 -41.09457 -39.78180 -38.75582 -37.20534 -35.55847 -34.61762 -32.43737 -31.82215 -30.36429 -29.65819 -29.16382 -27.09013 -25.46969 -24.42574 -23.93721 -22.83333 -21.96408 -21.64744 -19.30126 -18.62710 -17.96513 -17.61336 -17.34541 -17.15403 -16.90680 -16.58551 -16.54576 -16.26087 -16.05275 -15.92657 -15.70977 -15.26606 -15.14270 -14.77883 -14.52263 -14.43376 -14.04414 -13.89156 -13.82701 -13.28344 -13.09422 -12.91811 -12.64316 -12.61398 -12.54114 -12.35759 -12.31700 -12.25822 -12.14583 -11.91879 -11.64983 -11.53807 -11.34809 -10.92105 -10.85154 -10.60884 -9.28584 -8.96358 -8.38428 -8.21410 -6.30728 0.54429 0.67816 1.39066 1.42766 1.50373 2.01625 2.39191 2.54204 2.93872 3.10921 3.25185 3.58940 3.61177 3.85320 3.86139 3.99673 4.04634 4.05628 4.23628 4.24559 4.28675 4.35935 4.36794 4.43273 4.56120 4.58211 4.59769 4.67347 4.70138 4.78475 4.85548 4.98523 5.06046 5.10377 5.20918 5.30457 5.33260 5.39934 5.61172 5.63775 5.68737 6.05614 6.33013 6.34454 6.49023 6.63944 6.71331 6.85158 7.00315 7.38608 8.89321 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002012 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.407974 B =13914.048824 C =15092.062981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.028 3.972 13 C 0.113 3.887 14 H 0.067 0.933 15 O -0.557 6.557 16 C 0.108 3.892 17 N -0.739 5.739 18 C 0.246 3.754 19 C -0.243 4.243 20 C -0.032 4.032 21 C -0.271 4.271 22 C 0.161 3.839 23 O -0.336 6.336 24 C 0.017 3.983 25 C 0.059 3.941 26 F -0.238 7.238 27 C -0.258 4.258 28 H 0.009 0.991 29 H 0.053 0.947 30 H 0.085 0.915 31 H -0.041 1.041 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.383 0.617 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.136 0.864 46 H 0.092 0.908 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -23.210 14.674 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.101 4.101 13 C 0.053 3.947 14 H 0.085 0.915 15 O -0.364 6.364 16 C -0.017 4.017 17 N -0.367 5.367 18 C 0.141 3.859 19 C -0.266 4.266 20 C -0.051 4.051 21 C -0.292 4.292 22 C 0.115 3.885 23 O -0.250 6.250 24 C -0.058 4.058 25 C 0.005 3.995 26 F -0.219 7.219 27 C -0.281 4.281 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.104 0.896 31 H -0.023 1.023 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.232 0.768 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.154 0.846 46 H 0.110 0.890 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.803 -22.658 13.959 28.722 hybrid contribution -0.441 1.271 -0.064 1.346 sum 10.362 -21.388 13.895 27.529 Atomic orbital electron populations 1.22220 0.87296 1.01276 0.99900 1.61918 1.07993 1.15059 1.41620 1.19390 0.93771 0.83965 0.94648 1.21459 1.34731 0.97390 1.02549 0.92061 1.25925 0.95124 0.98178 1.00686 1.70073 1.39401 1.11874 1.36201 0.85453 0.78898 0.77126 0.79252 1.19029 1.20872 1.19564 1.22735 0.95959 0.99332 0.92100 1.21865 0.94875 0.93347 0.84612 0.91510 1.86647 1.76021 1.34696 1.39004 1.21977 0.80845 1.00874 0.98002 1.44703 1.07643 1.61615 1.22716 1.17634 0.89673 0.89638 0.88970 1.20822 1.01106 1.08892 0.95767 1.21010 0.92948 0.93421 0.97707 1.21215 0.96694 1.11442 0.99805 1.18722 0.82178 0.93674 0.93890 1.86046 1.18638 1.73387 1.46972 1.23776 0.92671 0.98758 0.90584 1.22429 0.89983 0.80613 1.06454 1.92759 1.86398 1.44459 1.98319 1.19785 0.92845 1.12660 1.02834 0.97259 0.92821 0.89647 1.02298 0.97746 0.92767 0.87746 0.94977 0.76821 0.89344 0.91083 0.76468 0.84812 0.82990 0.83514 0.90343 0.87527 0.84633 0.88980 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.32 127.69 1.19 2.70 16 2 N -0.54 -22.64 4.60 -927.04 -4.27 -26.91 16 3 C 0.21 11.17 4.57 85.56 0.39 11.56 16 4 C -0.52 -30.24 8.54 25.60 0.22 -30.02 16 5 H 0.06 3.48 7.10 -2.92 -0.02 3.46 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 8 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.03 0.87 4.63 86.30 0.40 1.27 16 13 C 0.11 3.45 3.02 30.60 0.09 3.54 16 14 H 0.07 2.62 6.55 -2.39 -0.02 2.61 16 15 O -0.56 -17.30 13.18 -148.98 -1.96 -19.27 16 16 C 0.11 2.47 4.55 86.38 0.39 2.87 16 17 N -0.74 -18.77 5.68 -339.45 -1.93 -20.70 16 18 C 0.25 6.18 6.65 38.20 0.25 6.43 16 19 C -0.24 -5.11 9.31 22.42 0.21 -4.91 16 20 C -0.03 -0.57 10.03 22.23 0.22 -0.34 16 21 C -0.27 -4.96 9.04 22.39 0.20 -4.76 16 22 C 0.16 3.80 6.68 22.49 0.15 3.95 16 23 O -0.34 -7.50 10.13 -92.39 -0.94 -8.44 16 24 C 0.02 0.21 5.20 71.98 0.37 0.58 16 25 C 0.06 0.59 7.93 71.98 0.57 1.16 16 26 F -0.24 -4.68 17.35 44.97 0.78 -3.90 16 27 C -0.26 -6.84 9.83 22.49 0.22 -6.62 16 28 H 0.01 0.33 8.13 -2.38 -0.02 0.31 16 29 H 0.05 2.17 6.90 -2.39 -0.02 2.15 16 30 H 0.08 2.41 7.97 -2.39 -0.02 2.39 16 31 H -0.04 -2.36 8.11 -2.39 -0.02 -2.38 16 32 H 0.00 0.26 6.38 -2.39 -0.02 0.25 16 33 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.10 2.45 7.88 -2.39 -0.02 2.43 16 35 H 0.03 1.03 8.05 -2.38 -0.02 1.02 16 36 H 0.38 8.38 9.05 -74.06 -0.67 7.71 16 37 H 0.09 1.58 7.95 -2.38 -0.02 1.56 16 38 H 0.07 1.60 7.95 -2.39 -0.02 1.58 16 39 H 0.40 11.00 8.48 -92.71 -0.79 10.22 16 40 H 0.13 2.40 6.73 -2.91 -0.02 2.38 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.15 1.78 6.29 -2.91 -0.02 1.76 16 43 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16 44 H 0.11 0.71 7.65 -2.39 -0.02 0.69 16 45 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -75.76 389.37 -1.12 -76.88 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.47 Total: 24.28 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.35 Total: -12.21 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -5.91 Total: -104.68 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -2.90 Total: -27.70 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.76 -1.12 -76.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572394569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.959 kcal (2) G-P(sol) polarization free energy of solvation -75.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds