Wall clock time and date at job start Tue Mar 31 2020 14:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48495 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47125 * 300.00229 * 3 2 1 6 6 H 1.48506 * 109.46829 * 59.99740 * 3 2 1 7 7 C 1.37875 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52465 * 174.99880 * 10 9 7 12 12 C 1.53039 * 109.27948 * 177.56038 * 11 10 9 13 13 N 1.46848 * 109.52207 * 300.82632 * 12 11 10 14 14 C 1.46904 * 110.99446 * 185.83590 * 13 12 11 15 15 C 1.50704 * 109.46668 * 169.99584 * 14 13 12 16 16 N 1.33258 * 125.50453 * 269.97524 * 15 14 13 17 17 C 1.30846 * 109.84391 * 180.02562 * 16 15 14 18 18 N 1.34719 * 108.03290 * 0.02562 * 17 16 15 19 19 C 1.40205 * 126.83994 * 179.97438 * 18 17 16 20 20 C 1.38838 * 120.06515 * 184.72285 * 19 18 17 21 21 C 1.38122 * 119.92998 * 179.77198 * 20 19 18 22 22 C 1.38279 * 120.06769 * 0.50093 * 21 20 19 23 23 C 1.38278 * 120.13304 * 359.75373 * 22 21 20 24 24 C 1.38123 * 120.06505 * 359.97438 * 23 22 21 25 25 N 1.30754 * 125.49455 * 90.00340 * 15 14 13 26 26 C 1.46839 * 111.20055 * 61.74221 * 13 12 11 27 27 C 1.53043 * 109.52311 * 298.25312 * 26 13 12 28 28 H 0.97002 * 120.00263 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46892 * 60.00216 * 9 7 2 30 30 H 1.08993 * 109.47554 * 300.00174 * 9 7 2 31 31 H 1.09003 * 109.51811 * 54.87448 * 10 9 7 32 32 H 1.08998 * 109.50108 * 57.62065 * 11 10 9 33 33 H 1.08996 * 109.53524 * 297.52260 * 11 10 9 34 34 H 1.08994 * 109.46491 * 180.80597 * 12 11 10 35 35 H 1.09006 * 109.44990 * 60.83399 * 12 11 10 36 36 H 1.09003 * 109.47278 * 50.00108 * 14 13 12 37 37 H 1.08995 * 109.47472 * 289.99558 * 14 13 12 38 38 H 1.08007 * 125.98178 * 180.02562 * 17 16 15 39 39 H 1.07997 * 120.03260 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.96423 * 180.25667 * 21 20 19 41 41 H 1.07994 * 119.93613 * 179.76628 * 22 21 20 42 42 H 1.08003 * 119.96745 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03177 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.46630 * 58.27193 * 26 13 12 45 45 H 1.09001 * 109.46725 * 178.24167 * 26 13 12 46 46 H 1.08998 * 109.50438 * 299.24134 * 27 26 13 47 47 H 1.08997 * 109.53547 * 179.13668 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4853 -4.9853 0.1240 12 6 2.4795 -6.1471 0.0609 13 7 3.2090 -6.1000 -1.2127 14 6 4.0730 -7.2780 -1.3681 15 6 4.6124 -7.3230 -2.7746 16 7 4.0323 -7.9345 -3.8067 17 6 4.7626 -7.7811 -4.8815 18 7 5.8465 -7.0536 -4.5489 19 6 6.8879 -6.6589 -5.4007 20 6 7.9912 -5.9907 -4.8872 21 6 9.0177 -5.6074 -5.7281 22 6 8.9424 -5.8794 -7.0818 23 6 7.8424 -6.5400 -7.5970 24 6 6.8153 -6.9308 -6.7602 25 7 5.7255 -6.7688 -3.1789 26 6 3.9843 -4.8590 -1.3350 27 6 3.0350 -3.6587 -1.3137 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.9320 -3.5551 0.8380 32 1 0.7703 -5.0734 -0.6940 33 1 0.9546 -5.0117 1.0757 34 1 1.9400 -7.0912 0.1358 35 1 3.1857 -6.0657 0.8873 36 1 3.4950 -8.1810 -1.1716 37 1 4.9018 -7.2163 -0.6629 38 1 4.5360 -8.1697 -5.8635 39 1 8.0483 -5.7738 -3.8307 40 1 9.8781 -5.0913 -5.3286 41 1 9.7445 -5.5753 -7.7380 42 1 7.7866 -6.7514 -8.6547 43 1 5.9566 -7.4472 -7.1631 44 1 4.6835 -4.7839 -0.5022 45 1 4.5378 -4.8675 -2.2740 46 1 2.3444 -3.7260 -2.1543 47 1 3.6115 -2.7368 -1.3891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572874787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:24 Heat of formation + Delta-G solvation = 114.025273 kcal Electronic energy + Delta-G solvation = -26747.521307 eV Core-core repulsion = 23124.642845 eV Total energy + Delta-G solvation = -3622.878462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53091 -39.57401 -38.65105 -35.10307 -34.07168 -32.39103 -31.84667 -31.15802 -30.31703 -29.99743 -28.30048 -26.03123 -24.20701 -23.59930 -22.91268 -22.51581 -21.60580 -20.72783 -20.09974 -18.86468 -18.65443 -16.64317 -16.41131 -16.16926 -15.88722 -15.33400 -15.25385 -14.84132 -14.55259 -14.42754 -14.18429 -13.87530 -13.50013 -13.30933 -13.26173 -12.69903 -12.49256 -12.45522 -12.13125 -12.00280 -11.80792 -11.56616 -11.47651 -11.11805 -10.99006 -10.73763 -10.59590 -10.57325 -10.23486 -10.20032 -10.00333 -9.85656 -9.49904 -9.47650 -9.00375 -8.82376 -8.69916 -8.28840 -8.10320 -5.93506 -3.94558 0.37715 0.85320 1.70998 1.93398 2.65341 3.33031 3.33992 3.41470 3.45496 3.83603 4.03461 4.24760 4.36259 4.48438 4.50891 4.57281 4.70437 4.88076 5.02682 5.13234 5.30521 5.34636 5.41222 5.42082 5.50754 5.53711 5.66542 5.76415 5.80774 5.85130 5.93562 6.00437 6.04063 6.11798 6.15960 6.20529 6.30092 6.32530 6.48998 6.62502 6.72046 6.73566 7.03183 7.14746 7.25267 7.31409 7.39397 7.75736 7.86565 7.92695 8.07903 8.51241 9.12305 9.68658 11.17917 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.002765 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.783983 B =10125.560571 C =11895.110500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.111 4.111 12 C 0.063 3.937 13 N -0.529 5.529 14 C 0.146 3.854 15 C 0.250 3.750 16 N -0.517 5.517 17 C 0.258 3.742 18 N -0.335 5.335 19 C 0.155 3.845 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.136 4.136 25 N -0.306 5.306 26 C 0.055 3.945 27 C -0.097 4.097 28 H 0.258 0.742 29 H 0.016 0.984 30 H 0.015 0.985 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.221 0.779 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.030 0.970 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.444 -18.524 -13.345 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.065 4.065 13 N -0.255 5.255 14 C 0.015 3.985 15 C -0.032 4.032 16 N -0.242 5.242 17 C -0.038 4.038 18 N -0.119 5.119 19 C 0.063 3.937 20 C -0.133 4.133 21 C -0.115 4.115 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.157 4.157 25 N -0.133 5.133 26 C -0.073 4.073 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.237 0.763 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.096 -18.198 -13.199 27.649 hybrid contribution 1.032 1.012 0.206 1.459 sum 17.127 -17.187 -12.994 27.524 Atomic orbital electron populations 1.69979 1.05998 1.26286 1.51346 1.25020 0.94798 0.99111 0.95621 0.86607 0.80157 0.84172 0.77504 1.19811 1.21108 1.21113 1.21301 0.92949 0.91053 1.49752 0.92699 1.19119 0.93629 0.91049 0.97126 1.21242 0.97890 0.94828 0.96053 1.21691 0.97499 0.94085 1.01641 1.22114 0.96257 0.99861 0.88240 1.61853 1.27460 1.01025 1.35204 1.20301 0.95945 0.96274 0.85947 1.24230 0.89020 0.92867 0.97092 1.70494 1.30159 1.25494 0.98021 1.26171 0.84093 0.93054 1.00469 1.47749 1.17504 1.39481 1.07193 1.17618 0.87814 0.99823 0.88493 1.21013 0.92342 0.98412 1.01526 1.21133 0.98236 0.98698 0.93397 1.21285 0.98573 0.99148 0.95507 1.20992 0.93010 0.97480 0.99787 1.20833 1.00946 1.03425 0.90516 1.78145 1.21797 1.24662 0.88653 1.22265 0.95211 0.89667 1.00127 1.21527 0.97759 0.95389 0.98838 0.93188 0.96536 0.96699 0.92979 0.91497 0.91886 0.91177 0.95049 0.88020 0.92522 0.76296 0.84372 0.84917 0.85292 0.84805 0.85033 0.95211 0.91593 0.92076 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.51 -14.61 8.44 -34.44 -0.29 -14.90 16 8 H 0.05 1.53 7.08 -52.49 -0.37 1.16 16 9 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.72 2.20 -90.50 -0.20 -1.92 16 11 C -0.11 -1.98 5.38 -26.65 -0.14 -2.13 16 12 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 13 N -0.53 -8.37 4.65 -236.11 -1.10 -9.47 16 14 C 0.15 1.96 5.59 -4.97 -0.03 1.94 16 15 C 0.25 3.64 6.78 -156.80 -1.06 2.58 16 16 N -0.52 -7.24 11.19 -11.89 -0.13 -7.37 16 17 C 0.26 2.81 11.98 -90.38 -1.08 1.73 16 18 N -0.34 -4.08 3.82 -11.80 -0.05 -4.12 16 19 C 0.16 1.58 6.69 -83.58 -0.56 1.02 16 20 C -0.11 -1.11 9.68 -39.40 -0.38 -1.49 16 21 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 22 C -0.13 -0.78 10.04 -39.55 -0.40 -1.17 16 23 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 24 C -0.14 -0.99 9.48 -39.40 -0.37 -1.36 16 25 N -0.31 -4.46 11.15 32.43 0.36 -4.10 16 26 C 0.05 0.95 5.31 -3.83 -0.02 0.93 16 27 C -0.10 -1.97 5.15 -26.65 -0.14 -2.10 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.20 7.99 -51.93 -0.41 0.79 16 37 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.22 1.27 7.13 -52.48 -0.37 0.90 16 39 H 0.14 1.48 7.75 -52.49 -0.41 1.08 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.13 0.62 6.83 -52.49 -0.36 0.26 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.17 6.41 -51.93 -0.33 0.84 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.07 1.55 7.05 -51.93 -0.37 1.18 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -34.27 381.11 -12.42 -46.69 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.25 Total: -1.80 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -5.71 Total: -15.92 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.18 Total: -51.75 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.27 -12.42 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572874787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.715 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds