Wall clock time and date at job start Tue Mar 31 2020 14:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48495 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47125 * 300.00229 * 3 2 1 6 6 H 1.48506 * 109.46829 * 59.99740 * 3 2 1 7 7 C 1.37875 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52465 * 174.99880 * 10 9 7 12 12 C 1.53039 * 109.27948 * 177.56038 * 11 10 9 13 13 N 1.46848 * 109.52207 * 300.82632 * 12 11 10 14 14 C 1.46904 * 110.99446 * 185.83590 * 13 12 11 15 15 C 1.50704 * 109.46668 * 169.99584 * 14 13 12 16 16 N 1.33258 * 125.50453 * 269.97524 * 15 14 13 17 17 C 1.30846 * 109.84391 * 180.02562 * 16 15 14 18 18 N 1.34719 * 108.03290 * 0.02562 * 17 16 15 19 19 C 1.40205 * 126.83994 * 179.97438 * 18 17 16 20 20 C 1.38838 * 120.06515 * 184.72285 * 19 18 17 21 21 C 1.38122 * 119.92998 * 179.77198 * 20 19 18 22 22 C 1.38279 * 120.06769 * 0.50093 * 21 20 19 23 23 C 1.38278 * 120.13304 * 359.75373 * 22 21 20 24 24 C 1.38123 * 120.06505 * 359.97438 * 23 22 21 25 25 N 1.30754 * 125.49455 * 90.00340 * 15 14 13 26 26 C 1.46839 * 111.20055 * 61.74221 * 13 12 11 27 27 C 1.53043 * 109.52311 * 298.25312 * 26 13 12 28 28 H 0.97002 * 120.00263 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46892 * 60.00216 * 9 7 2 30 30 H 1.08993 * 109.47554 * 300.00174 * 9 7 2 31 31 H 1.09003 * 109.51811 * 54.87448 * 10 9 7 32 32 H 1.08998 * 109.50108 * 57.62065 * 11 10 9 33 33 H 1.08996 * 109.53524 * 297.52260 * 11 10 9 34 34 H 1.08994 * 109.46491 * 180.80597 * 12 11 10 35 35 H 1.09006 * 109.44990 * 60.83399 * 12 11 10 36 36 H 1.09003 * 109.47278 * 50.00108 * 14 13 12 37 37 H 1.08995 * 109.47472 * 289.99558 * 14 13 12 38 38 H 1.08007 * 125.98178 * 180.02562 * 17 16 15 39 39 H 1.07997 * 120.03260 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.96423 * 180.25667 * 21 20 19 41 41 H 1.07994 * 119.93613 * 179.76628 * 22 21 20 42 42 H 1.08003 * 119.96745 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03177 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.46630 * 58.27193 * 26 13 12 45 45 H 1.09001 * 109.46725 * 178.24167 * 26 13 12 46 46 H 1.08998 * 109.50438 * 299.24134 * 27 26 13 47 47 H 1.08997 * 109.53547 * 179.13668 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4853 -4.9853 0.1240 12 6 2.4795 -6.1471 0.0609 13 7 3.2090 -6.1000 -1.2127 14 6 4.0730 -7.2780 -1.3681 15 6 4.6124 -7.3230 -2.7746 16 7 4.0323 -7.9345 -3.8067 17 6 4.7626 -7.7811 -4.8815 18 7 5.8465 -7.0536 -4.5489 19 6 6.8879 -6.6589 -5.4007 20 6 7.9912 -5.9907 -4.8872 21 6 9.0177 -5.6074 -5.7281 22 6 8.9424 -5.8794 -7.0818 23 6 7.8424 -6.5400 -7.5970 24 6 6.8153 -6.9308 -6.7602 25 7 5.7255 -6.7688 -3.1789 26 6 3.9843 -4.8590 -1.3350 27 6 3.0350 -3.6587 -1.3137 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.9320 -3.5551 0.8380 32 1 0.7703 -5.0734 -0.6940 33 1 0.9546 -5.0117 1.0757 34 1 1.9400 -7.0912 0.1358 35 1 3.1857 -6.0657 0.8873 36 1 3.4950 -8.1810 -1.1716 37 1 4.9018 -7.2163 -0.6629 38 1 4.5360 -8.1697 -5.8635 39 1 8.0483 -5.7738 -3.8307 40 1 9.8781 -5.0913 -5.3286 41 1 9.7445 -5.5753 -7.7380 42 1 7.7866 -6.7514 -8.6547 43 1 5.9566 -7.4472 -7.1631 44 1 4.6835 -4.7839 -0.5022 45 1 4.5378 -4.8675 -2.2740 46 1 2.3444 -3.7260 -2.1543 47 1 3.6115 -2.7368 -1.3891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572874787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:23 Heat of formation + Delta-G solvation = 95.017892 kcal Electronic energy + Delta-G solvation = -26748.345529 eV Core-core repulsion = 23124.642845 eV Total energy + Delta-G solvation = -3623.702684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.41915 -40.27987 -39.93660 -36.51276 -35.21719 -34.23977 -32.75371 -31.92705 -31.66764 -31.01480 -29.76280 -27.51132 -25.36857 -24.82614 -24.12558 -23.56771 -22.38767 -22.28487 -21.08894 -20.47980 -19.35416 -18.45384 -17.43772 -17.19497 -16.73564 -16.60086 -16.36387 -16.11335 -15.74525 -15.36385 -15.15392 -15.10833 -14.83758 -14.44722 -14.28959 -14.17632 -13.90385 -13.52592 -13.39853 -13.27640 -13.11682 -12.94373 -12.66145 -12.62809 -12.38157 -12.22976 -12.05649 -12.04071 -11.76668 -11.67189 -11.30027 -11.16104 -10.99209 -10.87505 -10.72058 -10.53921 -10.04520 -9.41011 -9.30560 -8.18846 -6.28331 -0.30957 0.30962 0.93369 1.16126 1.36978 1.37211 1.50406 1.70359 2.39994 2.76063 2.91410 3.11440 3.14459 3.31036 3.71202 3.90172 3.92376 3.97064 4.01863 4.08183 4.21734 4.29420 4.33209 4.39829 4.42547 4.51583 4.55394 4.61590 4.66450 4.74388 4.81867 4.91885 4.97135 5.02814 5.06577 5.12254 5.19215 5.35801 5.36724 5.37831 5.38639 5.40202 5.49955 5.55991 5.72418 5.78463 5.87183 6.02345 6.05741 6.11482 6.28902 6.87702 6.94586 7.39780 8.93317 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.002765 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.783983 B =10125.560571 C =11895.110500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.034 3.966 10 C -0.074 4.074 11 C -0.106 4.106 12 C 0.069 3.931 13 N -0.541 5.541 14 C 0.149 3.851 15 C 0.234 3.766 16 N -0.548 5.548 17 C 0.262 3.738 18 N -0.336 5.336 19 C 0.121 3.879 20 C -0.137 4.137 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.091 4.091 24 C -0.133 4.133 25 N -0.337 5.337 26 C 0.072 3.928 27 C -0.089 4.089 28 H 0.262 0.738 29 H -0.015 1.015 30 H -0.009 1.009 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.267 0.733 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.158 0.842 44 H 0.035 0.965 45 H 0.059 0.941 46 H 0.041 0.959 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.305 -19.580 -15.134 30.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.092 4.092 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.268 5.268 14 C 0.020 3.980 15 C -0.048 4.048 16 N -0.274 5.274 17 C -0.032 4.032 18 N -0.120 5.120 19 C 0.029 3.971 20 C -0.158 4.158 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.110 4.110 24 C -0.154 4.154 25 N -0.164 5.164 26 C -0.056 4.056 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.004 0.996 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.282 0.718 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.175 0.825 42 H 0.185 0.815 43 H 0.176 0.824 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.984 -19.267 -14.999 30.326 hybrid contribution 0.503 1.343 0.626 1.565 sum 18.488 -17.924 -14.373 29.490 Atomic orbital electron populations 1.70111 1.07724 1.27500 1.52216 1.25955 0.95731 1.03193 0.95093 0.85473 0.79080 0.79185 0.77786 1.18758 1.20500 1.20239 1.21669 0.93267 0.92246 1.49544 0.92454 1.19001 0.93970 0.92939 0.94369 1.21090 0.96943 0.94758 0.96441 1.21605 0.97771 0.93475 1.01582 1.22079 0.95838 0.99587 0.88253 1.61767 1.28021 1.01099 1.35877 1.20358 0.96112 0.95583 0.85989 1.24398 0.89313 0.93425 0.97699 1.70459 1.31420 1.26714 0.98774 1.27033 0.82975 0.91732 1.01437 1.47844 1.18250 1.39337 1.06563 1.18015 0.87784 1.01722 0.89561 1.21034 0.93736 0.99955 1.01025 1.21368 0.98030 0.98722 0.94078 1.21698 0.99346 0.97861 0.95082 1.21456 0.92100 0.96167 1.01229 1.21215 1.02195 1.02783 0.89160 1.78046 1.22303 1.25547 0.90501 1.21956 0.94276 0.89309 1.00020 1.21368 0.97574 0.96277 0.97524 0.92902 0.99641 0.99065 0.92963 0.92845 0.91026 0.88161 0.93796 0.86122 0.91575 0.71800 0.86621 0.83506 0.82477 0.81488 0.82401 0.94687 0.92271 0.94059 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.68 13.29 21.45 0.28 -58.40 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.53 -31.06 8.44 25.60 0.22 -30.85 16 8 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 9 C 0.03 1.88 4.45 29.85 0.13 2.02 16 10 C -0.07 -3.20 2.20 -10.71 -0.02 -3.22 16 11 C -0.11 -3.80 5.38 30.65 0.16 -3.63 16 12 C 0.07 1.95 5.46 86.33 0.47 2.42 16 13 N -0.54 -16.72 4.65 -900.92 -4.19 -20.90 16 14 C 0.15 3.86 5.59 85.56 0.48 4.34 16 15 C 0.23 6.77 6.78 138.61 0.94 7.71 16 16 N -0.55 -14.95 11.19 -191.53 -2.14 -17.09 16 17 C 0.26 5.39 11.98 180.26 2.16 7.55 16 18 N -0.34 -8.08 3.82 -191.26 -0.73 -8.81 16 19 C 0.12 2.39 6.69 38.09 0.25 2.64 16 20 C -0.14 -2.77 9.68 22.39 0.22 -2.55 16 21 C -0.10 -1.43 10.04 22.25 0.22 -1.21 16 22 C -0.12 -1.14 10.04 22.29 0.22 -0.92 16 23 C -0.09 -0.77 10.04 22.25 0.22 -0.54 16 24 C -0.13 -1.59 9.48 22.38 0.21 -1.38 16 25 N -0.34 -9.98 11.15 -51.30 -0.57 -10.55 16 26 C 0.07 2.52 5.31 86.33 0.46 2.98 16 27 C -0.09 -3.75 5.15 30.65 0.16 -3.59 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 2.28 8.01 -2.39 -0.02 2.26 16 35 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.12 2.62 7.99 -2.39 -0.02 2.60 16 37 H 0.07 1.57 8.12 -2.39 -0.02 1.56 16 38 H 0.27 2.28 7.13 -2.91 -0.02 2.26 16 39 H 0.12 2.74 7.75 -2.91 -0.02 2.72 16 40 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.16 0.92 6.83 -2.91 -0.02 0.90 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 2.16 6.41 -2.39 -0.02 2.14 16 46 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 47 H 0.05 2.34 7.05 -2.39 -0.02 2.32 16 Total: -1.00 -77.95 381.11 2.60 -75.35 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.95 Total: 10.49 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 6.97 Total: -17.92 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -7.35 Total: -115.75 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.95 2.60 -75.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572874787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.364 kcal (2) G-P(sol) polarization free energy of solvation -77.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds