Wall clock time and date at job start Tue Mar 31 2020 14:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00167 * 2 1 4 4 C 1.38717 * 120.04229 * 0.02562 * 3 2 1 5 5 C 1.38337 * 119.92024 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.99971 * 179.97438 * 5 4 3 7 7 C 1.38525 * 120.00670 * 359.97438 * 5 4 3 8 8 C 1.38207 * 120.07935 * 0.04729 * 7 5 4 9 9 C 1.50704 * 119.95809 * 179.97438 * 8 7 5 10 10 N 1.46897 * 109.47488 * 269.97926 * 9 8 7 11 11 C 1.46895 * 111.00366 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47359 * 59.99691 * 12 11 10 14 14 O 1.42900 * 109.46875 * 299.99759 * 12 11 10 15 15 C 1.53002 * 109.47057 * 180.02562 * 12 11 10 16 16 N 1.46898 * 109.46936 * 180.46260 * 15 12 11 17 17 C 1.46899 * 110.99905 * 199.84955 * 16 15 12 18 18 C 1.46893 * 111.00316 * 75.89496 * 16 15 12 19 19 C 1.50704 * 109.47126 * 190.00098 * 18 16 15 20 20 H 1.08003 * 119.99938 * 359.97438 * 19 18 16 21 21 C 1.37884 * 120.00009 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99938 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99948 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47286 * 90.00284 * 23 21 19 25 25 H 1.48499 * 109.47066 * 210.00138 * 23 21 19 26 26 H 1.48497 * 109.47295 * 330.00291 * 23 21 19 27 27 C 1.38172 * 120.08746 * 359.95086 * 8 7 5 28 28 H 1.09001 * 109.46380 * 299.99359 * 1 2 3 29 29 H 1.08996 * 109.46999 * 59.99094 * 1 2 3 30 30 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.03549 * 359.74353 * 4 3 2 32 32 H 1.07995 * 119.95849 * 180.02562 * 7 5 4 33 33 H 1.09007 * 109.47198 * 29.97858 * 9 8 7 34 34 H 1.08994 * 109.47432 * 149.97662 * 9 8 7 35 35 H 1.00904 * 110.99817 * 303.95559 * 10 9 8 36 36 H 1.09006 * 109.47044 * 299.99412 * 11 10 9 37 37 H 1.08997 * 109.47213 * 59.99837 * 11 10 9 38 38 H 0.96702 * 113.99877 * 300.00211 * 14 12 11 39 39 H 1.09001 * 109.46808 * 300.46016 * 15 12 11 40 40 H 1.09002 * 109.47494 * 60.45615 * 15 12 11 41 41 H 1.09002 * 109.47124 * 64.81876 * 17 16 15 42 42 H 1.09004 * 109.47650 * 184.81994 * 17 16 15 43 43 H 1.09005 * 109.47146 * 304.81852 * 17 16 15 44 44 H 1.09003 * 109.47155 * 309.99514 * 18 16 15 45 45 H 1.09002 * 109.47361 * 69.99895 * 18 16 15 46 46 H 0.96995 * 119.99653 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.00538 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3748 0.0005 5 6 1.9221 3.6060 0.0000 6 9 1.1888 4.7407 0.0000 7 6 3.3056 3.6757 -0.0005 8 6 4.0576 2.5161 -0.0015 9 6 5.5626 2.5951 -0.0027 10 7 6.0506 2.6207 -1.3880 11 6 7.5169 2.6983 -1.4283 12 6 7.9865 2.7236 -2.8843 13 1 7.5627 3.5925 -3.3877 14 8 7.5542 1.5325 -3.5449 15 6 9.5138 2.8037 -2.9263 16 7 9.9640 2.8392 -4.3241 17 6 11.3757 2.4475 -4.4326 18 6 9.7384 4.1643 -4.9165 19 6 9.9788 4.0977 -6.4027 20 1 10.2705 3.1644 -6.8613 21 6 9.8273 5.2286 -7.1769 22 7 10.0366 5.1703 -8.4740 23 14 9.3235 6.8429 -6.3837 24 1 10.5376 7.5910 -5.9694 25 1 8.5512 7.6539 -7.3590 26 1 8.4812 6.5674 -5.1922 27 6 3.4314 1.2844 -0.0010 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3198 -0.0032 32 1 3.7972 4.6373 -0.0005 33 1 5.8792 3.5030 0.5109 34 1 5.9725 1.7255 0.5108 35 1 5.7161 1.8207 -1.9040 36 1 7.8467 3.6071 -0.9248 37 1 7.9407 1.8296 -0.9245 38 1 7.8940 0.7180 -3.1496 39 1 9.8443 3.7079 -2.4151 40 1 9.9373 1.9305 -2.4301 41 1 11.4881 1.4062 -4.1306 42 1 11.7070 2.5644 -5.4645 43 1 11.9796 3.0814 -3.7831 44 1 8.7110 4.4763 -4.7283 45 1 10.4243 4.8838 -4.4693 46 1 9.9305 5.9660 -9.0186 47 1 4.0203 0.3791 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572992509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:05 Heat of formation + Delta-G solvation = -96.657763 kcal Electronic energy + Delta-G solvation = -27069.014595 eV Core-core repulsion = 22973.938255 eV Total energy + Delta-G solvation = -4095.076340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.19589 -40.51708 -38.57563 -37.90001 -36.04591 -34.91984 -32.40704 -31.72037 -30.68454 -29.65751 -27.99898 -27.74866 -26.46213 -24.56352 -23.05162 -22.90452 -21.67235 -21.38910 -19.96348 -18.51023 -17.43858 -16.94969 -16.55594 -16.37213 -16.33852 -16.19242 -15.92865 -15.68675 -15.21937 -14.87794 -14.74669 -14.57704 -14.27624 -13.98582 -13.55092 -13.48570 -13.12241 -12.79345 -12.65011 -12.52154 -12.35224 -12.25930 -11.93528 -11.79488 -11.59689 -11.53502 -11.35444 -11.27035 -11.05651 -10.73705 -10.63832 -10.05877 -9.82856 -9.66881 -9.24202 -9.15761 -8.62471 -8.55958 -8.52626 -7.33625 -6.00395 -3.96981 0.73577 0.93730 2.76165 3.15432 3.31386 3.39616 3.41949 3.84271 4.01199 4.29684 4.46384 4.53257 4.61314 4.65131 4.69096 4.71276 4.78145 4.87722 4.98881 5.04291 5.12412 5.18870 5.25977 5.28981 5.33649 5.48221 5.60759 5.67292 5.67996 5.68789 5.79824 5.91228 6.07477 6.11603 6.22482 6.30762 6.40657 6.67978 6.79074 6.87624 6.89965 6.99889 7.24361 7.64707 7.89357 8.04926 8.08049 8.70588 9.08614 9.61420 11.12895 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.002336 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.411498 B =11984.226580 C =12852.112486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.156 3.844 4 C -0.247 4.247 5 C 0.138 3.862 6 F -0.136 7.136 7 C -0.167 4.167 8 C -0.013 4.013 9 C 0.097 3.903 10 N -0.678 5.678 11 C 0.029 3.971 12 C 0.115 3.885 13 H 0.108 0.892 14 O -0.538 6.538 15 C 0.023 3.977 16 N -0.521 5.521 17 C 0.036 3.964 18 C 0.161 3.839 19 C -0.506 4.506 20 H 0.081 0.919 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.874 3.126 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.266 1.266 27 C -0.155 4.155 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.353 0.647 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.360 0.640 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.008 0.992 44 H 0.030 0.970 45 H -0.019 1.019 46 H 0.263 0.737 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 -9.110 23.554 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.110 3.890 4 C -0.267 4.267 5 C 0.119 3.881 6 F -0.115 7.115 7 C -0.186 4.186 8 C -0.013 4.013 9 C -0.032 4.032 10 N -0.311 5.311 11 C -0.101 4.101 12 C 0.055 3.945 13 H 0.126 0.874 14 O -0.341 6.341 15 C -0.106 4.106 16 N -0.244 5.244 17 C -0.112 4.112 18 C 0.035 3.965 19 C -0.544 4.544 20 H 0.099 0.901 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.702 3.298 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.174 4.174 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.172 0.828 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.205 0.795 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.027 0.973 44 H 0.048 0.952 45 H -0.001 1.001 46 H 0.073 0.927 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.356 -8.375 22.655 29.171 hybrid contribution 0.308 0.720 1.414 1.616 sum -16.047 -7.655 24.069 29.924 Atomic orbital electron populations 1.23128 0.77976 1.04308 1.01623 1.86111 1.21739 1.26230 1.88342 1.18619 0.91916 0.83734 0.94687 1.21127 1.01101 0.91285 1.13203 1.17340 0.89196 0.81471 1.00120 1.91517 1.77292 1.49042 1.93631 1.20952 0.91402 1.00156 1.06114 1.19362 0.95553 0.91285 0.95136 1.20913 0.89232 1.01912 0.91100 1.60345 1.09492 1.49791 1.11482 1.22708 0.87583 1.01163 0.98630 1.21969 0.92913 0.89667 0.89964 0.87388 1.86722 1.74100 1.14828 1.58430 1.22722 0.95811 1.00077 0.92035 1.61848 1.18428 1.31196 1.12953 1.22273 0.88304 0.97859 1.02807 1.20235 0.95662 0.84374 0.96227 1.21024 1.45998 0.97650 0.89717 0.90126 1.24903 0.95116 0.98665 0.94734 1.69893 1.50096 1.29361 1.04673 0.86873 0.79028 0.84257 0.79661 1.20480 1.21121 1.19106 1.20359 0.91301 0.98437 1.07331 0.92476 0.92309 0.87882 0.84297 0.84246 0.89631 0.93798 0.82764 0.90218 0.95005 0.79471 0.94897 0.91872 0.93445 0.89874 0.97348 0.95242 1.00135 0.92718 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.75 10.50 -19.42 -0.20 -2.95 16 3 C 0.16 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.25 -2.30 9.02 -39.37 -0.35 -2.66 16 5 C 0.14 1.45 7.30 -39.44 -0.29 1.16 16 6 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 7 C -0.17 -1.70 9.68 -39.49 -0.38 -2.08 16 8 C -0.01 -0.12 5.39 -104.66 -0.56 -0.68 16 9 C 0.10 0.85 5.81 -4.98 -0.03 0.83 16 10 N -0.68 -7.53 6.49 -115.06 -0.75 -8.27 16 11 C 0.03 0.32 5.39 -3.82 -0.02 0.30 16 12 C 0.11 1.73 3.30 -26.73 -0.09 1.64 16 13 H 0.11 1.99 6.78 -51.93 -0.35 1.64 16 14 O -0.54 -8.41 12.55 -35.23 -0.44 -8.85 16 15 C 0.02 0.37 4.65 -3.82 -0.02 0.36 16 16 N -0.52 -10.85 4.56 -244.37 -1.11 -11.97 16 17 C 0.04 0.68 9.37 60.06 0.56 1.25 16 18 C 0.16 3.97 3.62 -4.98 -0.02 3.95 16 19 C -0.51 -14.65 8.94 -34.44 -0.31 -14.96 16 20 H 0.08 2.54 7.41 -52.48 -0.39 2.16 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 23 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 27 C -0.15 -1.45 9.64 -39.42 -0.38 -1.82 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.02 6.30 -52.49 -0.33 0.69 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.35 4.01 8.12 -39.29 -0.32 3.70 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.36 4.13 9.04 45.56 0.41 4.55 16 39 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 40 H 0.06 0.85 7.94 -51.93 -0.41 0.43 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.79 6.67 -51.93 -0.35 1.44 16 43 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 44 H 0.03 0.74 5.69 -51.93 -0.30 0.45 16 45 H -0.02 -0.47 7.55 -51.93 -0.39 -0.86 16 46 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -33.68 387.71 -8.38 -42.05 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.60 Total: 4.15 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.26 Total: -8.50 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -1.09 Total: -47.55 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.65 Total: -11.80 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.68 -8.38 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572992509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.606 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds