Wall clock time and date at job start Tue Mar 31 2020 14:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00167 * 2 1 4 4 C 1.38717 * 120.04229 * 0.02562 * 3 2 1 5 5 C 1.38337 * 119.92024 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.99971 * 179.97438 * 5 4 3 7 7 C 1.38525 * 120.00670 * 359.97438 * 5 4 3 8 8 C 1.38207 * 120.07935 * 0.04729 * 7 5 4 9 9 C 1.50704 * 119.95809 * 179.97438 * 8 7 5 10 10 N 1.46897 * 109.47488 * 269.97926 * 9 8 7 11 11 C 1.46895 * 111.00366 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47359 * 59.99691 * 12 11 10 14 14 O 1.42900 * 109.46875 * 299.99759 * 12 11 10 15 15 C 1.53002 * 109.47057 * 180.02562 * 12 11 10 16 16 N 1.46898 * 109.46936 * 180.46260 * 15 12 11 17 17 C 1.46899 * 110.99905 * 199.84955 * 16 15 12 18 18 C 1.46893 * 111.00316 * 75.89496 * 16 15 12 19 19 C 1.50704 * 109.47126 * 190.00098 * 18 16 15 20 20 H 1.08003 * 119.99938 * 359.97438 * 19 18 16 21 21 C 1.37884 * 120.00009 * 180.02562 * 19 18 16 22 22 N 1.31516 * 119.99938 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99948 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47286 * 90.00284 * 23 21 19 25 25 H 1.48499 * 109.47066 * 210.00138 * 23 21 19 26 26 H 1.48497 * 109.47295 * 330.00291 * 23 21 19 27 27 C 1.38172 * 120.08746 * 359.95086 * 8 7 5 28 28 H 1.09001 * 109.46380 * 299.99359 * 1 2 3 29 29 H 1.08996 * 109.46999 * 59.99094 * 1 2 3 30 30 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.03549 * 359.74353 * 4 3 2 32 32 H 1.07995 * 119.95849 * 180.02562 * 7 5 4 33 33 H 1.09007 * 109.47198 * 29.97858 * 9 8 7 34 34 H 1.08994 * 109.47432 * 149.97662 * 9 8 7 35 35 H 1.00904 * 110.99817 * 303.95559 * 10 9 8 36 36 H 1.09006 * 109.47044 * 299.99412 * 11 10 9 37 37 H 1.08997 * 109.47213 * 59.99837 * 11 10 9 38 38 H 0.96702 * 113.99877 * 300.00211 * 14 12 11 39 39 H 1.09001 * 109.46808 * 300.46016 * 15 12 11 40 40 H 1.09002 * 109.47494 * 60.45615 * 15 12 11 41 41 H 1.09002 * 109.47124 * 64.81876 * 17 16 15 42 42 H 1.09004 * 109.47650 * 184.81994 * 17 16 15 43 43 H 1.09005 * 109.47146 * 304.81852 * 17 16 15 44 44 H 1.09003 * 109.47155 * 309.99514 * 18 16 15 45 45 H 1.09002 * 109.47361 * 69.99895 * 18 16 15 46 46 H 0.96995 * 119.99653 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.00538 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3748 0.0005 5 6 1.9221 3.6060 0.0000 6 9 1.1888 4.7407 0.0000 7 6 3.3056 3.6757 -0.0005 8 6 4.0576 2.5161 -0.0015 9 6 5.5626 2.5951 -0.0027 10 7 6.0506 2.6207 -1.3880 11 6 7.5169 2.6983 -1.4283 12 6 7.9865 2.7236 -2.8843 13 1 7.5627 3.5925 -3.3877 14 8 7.5542 1.5325 -3.5449 15 6 9.5138 2.8037 -2.9263 16 7 9.9640 2.8392 -4.3241 17 6 11.3757 2.4475 -4.4326 18 6 9.7384 4.1643 -4.9165 19 6 9.9788 4.0977 -6.4027 20 1 10.2705 3.1644 -6.8613 21 6 9.8273 5.2286 -7.1769 22 7 10.0366 5.1703 -8.4740 23 14 9.3235 6.8429 -6.3837 24 1 10.5376 7.5910 -5.9694 25 1 8.5512 7.6539 -7.3590 26 1 8.4812 6.5674 -5.1922 27 6 3.4314 1.2844 -0.0010 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3198 -0.0032 32 1 3.7972 4.6373 -0.0005 33 1 5.8792 3.5030 0.5109 34 1 5.9725 1.7255 0.5108 35 1 5.7161 1.8207 -1.9040 36 1 7.8467 3.6071 -0.9248 37 1 7.9407 1.8296 -0.9245 38 1 7.8940 0.7180 -3.1496 39 1 9.8443 3.7079 -2.4151 40 1 9.9373 1.9305 -2.4301 41 1 11.4881 1.4062 -4.1306 42 1 11.7070 2.5644 -5.4645 43 1 11.9796 3.0814 -3.7831 44 1 8.7110 4.4763 -4.7283 45 1 10.4243 4.8838 -4.4693 46 1 9.9305 5.9660 -9.0186 47 1 4.0203 0.3791 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572992509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:05 Heat of formation + Delta-G solvation = -123.791353 kcal Electronic energy + Delta-G solvation = -27070.191196 eV Core-core repulsion = 22973.938255 eV Total energy + Delta-G solvation = -4096.252941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.00343 -41.16899 -39.63873 -38.75158 -37.38362 -35.90481 -34.58069 -32.56058 -31.35826 -30.86232 -29.84166 -28.34595 -27.43863 -25.81297 -24.48365 -23.67396 -22.69146 -22.26563 -21.56888 -19.20024 -19.04233 -18.13059 -17.42081 -17.26501 -17.20453 -16.98389 -16.88634 -16.48664 -16.38568 -16.20913 -15.95784 -15.53346 -15.47629 -15.31475 -14.69197 -14.61971 -14.35118 -14.17721 -13.90757 -13.37237 -13.27333 -13.19616 -13.05786 -13.00859 -12.66111 -12.60606 -12.52393 -12.40194 -12.24016 -12.14010 -11.91095 -11.81013 -11.60651 -11.42584 -10.78147 -10.75519 -9.94171 -9.33007 -9.30916 -8.93502 -8.27815 -6.30122 0.01896 0.21365 1.32189 1.35942 1.46218 2.20558 2.34307 2.43173 3.01209 3.06956 3.13842 3.47516 3.62933 3.75998 3.89969 3.94402 4.02884 4.15103 4.18713 4.29412 4.32887 4.35411 4.35748 4.47125 4.49919 4.57829 4.64518 4.67744 4.71934 4.72767 4.84275 4.94795 4.97413 5.00530 5.02407 5.10381 5.21411 5.25170 5.40975 5.57431 5.61549 5.97504 6.05315 6.28047 6.40175 6.43632 6.68186 6.76169 7.09561 7.32934 8.89084 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.002336 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.411498 B =11984.226580 C =12852.112486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.149 3.851 4 C -0.248 4.248 5 C 0.120 3.880 6 F -0.145 7.145 7 C -0.178 4.178 8 C -0.015 4.015 9 C 0.102 3.898 10 N -0.696 5.696 11 C 0.043 3.957 12 C 0.120 3.880 13 H 0.067 0.933 14 O -0.561 6.561 15 C 0.024 3.976 16 N -0.542 5.542 17 C 0.039 3.961 18 C 0.174 3.826 19 C -0.513 4.513 20 H 0.037 0.963 21 C 0.005 3.995 22 N -0.949 5.949 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.282 1.282 26 H -0.251 1.251 27 C -0.158 4.158 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.349 0.651 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.379 0.621 39 H 0.041 0.959 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.023 0.977 44 H 0.025 0.975 45 H -0.016 1.016 46 H 0.266 0.734 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 -9.487 26.501 32.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.103 3.897 4 C -0.267 4.267 5 C 0.100 3.900 6 F -0.124 7.124 7 C -0.197 4.197 8 C -0.016 4.016 9 C -0.026 4.026 10 N -0.328 5.328 11 C -0.087 4.087 12 C 0.059 3.941 13 H 0.085 0.915 14 O -0.367 6.367 15 C -0.105 4.105 16 N -0.266 5.266 17 C -0.109 4.109 18 C 0.046 3.954 19 C -0.552 4.552 20 H 0.055 0.945 21 C -0.192 4.192 22 N -0.590 5.590 23 Si 0.769 3.231 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.175 1.175 27 C -0.177 4.177 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.002 0.998 46 H 0.075 0.925 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.790 -8.780 25.638 31.880 hybrid contribution 0.420 0.661 0.464 0.910 sum -16.370 -8.119 26.102 31.862 Atomic orbital electron populations 1.23410 0.76223 1.05950 1.02334 1.86098 1.23624 1.25857 1.88192 1.18766 0.92245 0.84084 0.94572 1.21298 1.02060 0.90827 1.12558 1.17547 0.89500 0.81664 1.01259 1.91489 1.77489 1.49528 1.93851 1.21090 0.91508 1.00657 1.06485 1.19457 0.96045 0.91069 0.95023 1.20928 0.88566 1.03135 0.89994 1.60301 1.09603 1.49995 1.12940 1.22506 0.87708 1.02736 0.95705 1.21799 0.92077 0.88211 0.91970 0.91493 1.86673 1.74551 1.15920 1.59523 1.22849 0.96462 1.02005 0.89135 1.61723 1.19621 1.28829 1.16433 1.22228 0.87612 1.00149 1.00886 1.19930 0.95191 0.86755 0.93490 1.21291 1.45412 0.96042 0.92407 0.94515 1.25863 0.95141 1.02974 0.95211 1.70052 1.51723 1.30739 1.06475 0.85738 0.79293 0.79014 0.79063 1.18968 1.20732 1.17498 1.20580 0.91554 0.98865 1.06728 0.91413 0.91931 0.85883 0.82713 0.84139 0.88985 0.91807 0.83136 0.89552 0.92204 0.77329 0.94097 0.88385 0.90151 0.93684 0.95892 0.95742 0.99806 0.92494 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.23 10.50 -92.39 -0.97 -6.20 16 3 C 0.15 2.66 6.69 22.50 0.15 2.81 16 4 C -0.25 -4.39 9.02 22.41 0.20 -4.18 16 5 C 0.12 2.46 7.30 22.36 0.16 2.62 16 6 F -0.14 -3.23 17.27 44.97 0.78 -2.46 16 7 C -0.18 -3.51 9.68 22.33 0.22 -3.29 16 8 C -0.02 -0.27 5.39 -19.89 -0.11 -0.37 16 9 C 0.10 1.53 5.81 85.56 0.50 2.03 16 10 N -0.70 -13.92 6.49 -517.93 -3.36 -17.28 16 11 C 0.04 0.82 5.39 86.31 0.47 1.29 16 12 C 0.12 3.37 3.30 30.60 0.10 3.47 16 13 H 0.07 2.45 6.78 -2.39 -0.02 2.43 16 14 O -0.56 -16.71 12.55 -148.98 -1.87 -18.57 16 15 C 0.02 0.71 4.65 86.30 0.40 1.11 16 16 N -0.54 -22.08 4.56 -927.03 -4.22 -26.30 16 17 C 0.04 1.45 9.37 127.69 1.20 2.65 16 18 C 0.17 8.51 3.62 85.56 0.31 8.82 16 19 C -0.51 -30.66 8.94 25.60 0.23 -30.43 16 20 H 0.04 2.45 7.41 -2.91 -0.02 2.43 16 21 C 0.01 0.30 5.47 84.66 0.46 0.77 16 22 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 23 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 27 C -0.16 -2.70 9.64 22.37 0.22 -2.48 16 28 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 30 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.16 2.08 6.30 -2.91 -0.02 2.06 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.09 1.27 8.08 -2.38 -0.02 1.25 16 34 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.35 7.32 8.12 -89.69 -0.73 6.59 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.38 7.75 9.04 -74.06 -0.67 7.08 16 39 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 40 H 0.10 2.19 7.94 -2.39 -0.02 2.17 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.04 1.98 6.67 -2.38 -0.02 1.96 16 43 H 0.02 0.77 8.13 -2.38 -0.02 0.75 16 44 H 0.02 1.23 5.69 -2.39 -0.01 1.22 16 45 H -0.02 -0.75 7.55 -2.39 -0.02 -0.77 16 46 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -75.51 387.71 -2.31 -77.82 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.46 Total: 20.24 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.61 Total: -13.95 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -7.29 Total: -104.24 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -2.84 Total: -24.78 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -75.51 -2.31 -77.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572992509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.972 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds