Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35874 * 116.99770 * 2 1 4 4 C 1.37617 * 120.22869 * 359.97438 * 3 2 1 5 5 C 1.39173 * 120.82467 * 180.02562 * 4 3 2 6 6 C 1.36260 * 120.87625 * 0.25766 * 5 4 3 7 7 C 1.40182 * 119.88624 * 359.44786 * 6 5 4 8 8 C 1.41577 * 121.27403 * 180.26972 * 7 6 5 9 9 N 1.38712 * 121.04683 * 0.34019 * 8 7 6 10 10 C 1.46851 * 111.00214 * 244.18477 * 9 8 7 11 11 C 1.53034 * 109.52098 * 174.15870 * 10 9 8 12 12 C 1.53119 * 109.28049 * 59.18513 * 11 10 9 13 13 C 1.52994 * 109.52617 * 182.43874 * 12 11 10 14 14 C 1.50706 * 109.47146 * 294.68096 * 13 12 11 15 15 H 1.08006 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37868 * 120.00407 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99990 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47181 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47192 * 119.99915 * 18 16 14 21 21 H 1.48506 * 109.46987 * 239.99828 * 18 16 14 22 22 C 1.53121 * 109.15852 * 302.34172 * 12 11 10 23 23 C 1.46850 * 111.00016 * 119.97797 * 9 8 7 24 24 C 1.38539 * 117.90921 * 180.31605 * 8 7 6 25 25 C 1.38878 * 119.68293 * 0.02562 * 24 8 7 26 26 N 1.31237 * 121.83758 * 359.97176 * 25 24 8 27 27 C 1.33770 * 121.68050 * 0.02746 * 26 25 24 28 28 H 1.08998 * 109.47080 * 60.00545 * 1 2 3 29 29 H 1.09002 * 109.47031 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47020 * 300.00302 * 1 2 3 31 31 H 1.08000 * 119.58339 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.55740 * 179.97438 * 5 4 3 33 33 H 1.08005 * 120.05216 * 179.72394 * 6 5 4 34 34 H 1.08992 * 109.46076 * 294.17941 * 10 9 8 35 35 H 1.09001 * 109.45648 * 54.14536 * 10 9 8 36 36 H 1.08997 * 109.50962 * 299.23590 * 11 10 9 37 37 H 1.08999 * 109.49929 * 179.12029 * 11 10 9 38 38 H 1.08996 * 109.52276 * 62.24388 * 12 11 10 39 39 H 1.09004 * 109.47476 * 54.67807 * 13 12 11 40 40 H 1.08994 * 109.47739 * 174.68256 * 13 12 11 41 41 H 0.96999 * 119.99783 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.50219 * 297.71507 * 22 12 11 43 43 H 1.09000 * 109.50551 * 177.59832 * 22 12 11 44 44 H 1.09002 * 109.45896 * 305.85060 * 23 9 8 45 45 H 1.08995 * 109.46810 * 65.82238 * 23 9 8 46 46 H 1.07999 * 120.15957 * 179.97438 * 24 8 7 47 47 H 1.08006 * 119.07542 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.3009 2.3678 -0.0005 5 6 1.9198 3.6143 -0.0011 6 6 3.2782 3.7206 -0.0063 7 6 4.0694 2.5635 0.0004 8 6 5.4831 2.6398 0.0009 9 7 6.1335 3.8650 0.0017 10 6 6.9079 4.0506 -1.2321 11 6 7.4910 5.4652 -1.2619 12 6 8.3889 5.6679 -0.0382 13 6 8.9265 7.1002 -0.0301 14 6 9.8318 7.3038 -1.2177 15 1 10.0064 6.4924 -1.9088 16 6 10.4377 8.5253 -1.4213 17 7 10.2255 9.5132 -0.5793 18 14 11.5592 8.7778 -2.8937 19 1 11.6315 7.5214 -3.6820 20 1 11.0192 9.8672 -3.7462 21 1 12.9189 9.1453 -2.4231 22 6 7.5703 5.4214 1.2321 23 6 6.9849 4.0080 1.1896 24 6 6.1966 1.4522 0.0010 25 6 5.5166 0.2413 0.0001 26 7 4.2054 0.1837 -0.0003 27 6 3.4536 1.2901 -0.0004 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2226 2.3077 -0.0014 32 1 1.3152 4.5093 -0.0019 33 1 3.7445 4.6949 -0.0112 34 1 7.7186 3.3228 -1.2649 35 1 6.2567 3.9079 -2.0944 36 1 6.6803 6.1936 -1.2430 37 1 8.0786 5.5975 -2.1703 38 1 9.2214 4.9655 -0.0771 39 1 8.0936 7.8013 -0.0838 40 1 9.4878 7.2725 0.8882 41 1 10.6516 10.3727 -0.7228 42 1 6.7608 6.1490 1.2903 43 1 8.2145 5.5224 2.1055 44 1 6.3896 3.8345 2.0861 45 1 7.7953 3.2805 1.1455 46 1 7.2765 1.4680 0.0009 47 1 6.0826 -0.6785 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574448739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = 13.761648 kcal Electronic energy + Delta-G solvation = -27292.994054 eV Core-core repulsion = 23633.475084 eV Total energy + Delta-G solvation = -3659.518970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29770 -39.62290 -38.36082 -36.55433 -35.08109 -32.67857 -31.17713 -30.79240 -30.53455 -29.36421 -27.66292 -27.47601 -24.59362 -23.79628 -23.30787 -22.70725 -21.56537 -20.69500 -19.13735 -18.37888 -18.14382 -17.26127 -16.31701 -16.15497 -16.04819 -15.68301 -14.94147 -14.87800 -14.66799 -14.46794 -14.04559 -13.79138 -13.60446 -13.55690 -13.34001 -13.09119 -12.53187 -12.23067 -12.10518 -12.07935 -12.00114 -11.76644 -11.37942 -11.27984 -11.20732 -10.92397 -10.77728 -10.72616 -10.35390 -10.11238 -9.78864 -9.67809 -9.58597 -9.12946 -8.98236 -8.91877 -8.46772 -8.34814 -7.80554 -5.99952 -4.01574 0.30433 0.66731 1.85026 2.81666 2.91005 3.29916 3.37965 3.41062 3.75704 3.96067 4.07220 4.45328 4.58296 4.69877 4.74632 4.84013 4.85226 4.90044 5.03744 5.16761 5.19736 5.22413 5.27000 5.34664 5.38921 5.46947 5.49241 5.58777 5.72885 5.80917 5.83353 5.88997 6.01670 6.10670 6.14109 6.29210 6.38913 6.42521 6.45311 6.54755 6.63856 6.86241 7.03839 7.08005 7.10851 7.15166 7.34705 7.67639 7.82971 7.83660 8.00370 8.42988 9.05181 9.62274 11.11314 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002482 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.924078 B =11280.726209 C =11620.191946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.296 6.296 3 C 0.146 3.854 4 C -0.206 4.206 5 C -0.090 4.090 6 C -0.106 4.106 7 C -0.056 4.056 8 C 0.164 3.836 9 N -0.504 5.504 10 C 0.062 3.938 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.111 4.111 23 C 0.065 3.935 24 C -0.206 4.206 25 C 0.130 3.870 26 N -0.464 5.464 27 C 0.116 3.884 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.136 0.864 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.598 -17.233 2.501 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.099 3.901 4 C -0.227 4.227 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.059 4.059 8 C 0.061 3.939 9 N -0.226 5.226 10 C -0.063 4.063 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.009 4.009 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.149 4.149 23 C -0.061 4.061 24 C -0.229 4.229 25 C -0.042 4.042 26 N -0.172 5.172 27 C -0.007 4.007 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.154 0.846 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.336 -17.641 2.547 25.571 hybrid contribution 1.486 0.568 -0.816 1.788 sum -16.850 -17.073 1.731 24.050 Atomic orbital electron populations 1.23118 0.78642 1.04045 1.01342 1.86186 1.20813 1.26061 1.87700 1.18656 0.89775 0.84833 0.96806 1.21113 1.00090 0.91965 1.09485 1.20669 0.94817 0.96786 0.98519 1.20965 0.93039 0.98518 0.99989 1.18481 0.92826 0.93418 1.01174 1.19074 0.91818 0.89497 0.93541 1.59218 1.32132 1.26831 1.04406 1.22328 0.95053 0.99408 0.89541 1.21578 0.98973 0.93103 1.00047 1.21256 0.95724 1.01061 0.92020 1.19113 0.95736 0.89107 0.96927 1.21278 1.27309 0.96934 1.09751 0.92656 1.25021 0.96826 0.96285 0.96385 1.69975 1.44135 1.02869 1.36511 0.86602 0.80663 0.78115 0.83004 1.19808 1.21073 1.21123 1.21716 0.99584 0.94226 0.99399 1.22228 0.94205 0.98891 0.90788 1.22781 1.02008 0.93978 1.04101 1.22700 0.89865 0.97459 0.94188 1.68002 1.06866 1.30244 1.12069 1.18036 0.91014 0.88749 1.02903 0.92587 0.88131 0.92598 0.85060 0.85342 0.83854 0.94507 0.91288 0.91571 0.90405 0.92854 0.96451 0.96694 0.93130 0.91334 0.91652 0.91322 0.94449 0.84613 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.51 10.29 -19.34 -0.20 -3.70 16 3 C 0.15 1.84 6.74 -38.76 -0.26 1.58 16 4 C -0.21 -2.11 9.02 -39.46 -0.36 -2.47 16 5 C -0.09 -0.94 9.95 -39.95 -0.40 -1.33 16 6 C -0.11 -1.32 9.55 -39.56 -0.38 -1.69 16 7 C -0.06 -0.77 5.75 -106.67 -0.61 -1.38 16 8 C 0.16 2.21 4.69 -83.37 -0.39 1.82 16 9 N -0.50 -7.06 3.83 -170.71 -0.65 -7.71 16 10 C 0.06 0.91 5.17 -3.83 -0.02 0.89 16 11 C -0.10 -1.74 5.15 -26.65 -0.14 -1.88 16 12 C -0.08 -1.57 2.20 -90.50 -0.20 -1.77 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 14 C -0.51 -13.95 8.44 -34.44 -0.29 -14.24 16 15 H 0.06 1.46 7.08 -52.48 -0.37 1.09 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.11 -1.80 5.38 -26.65 -0.14 -1.95 16 23 C 0.06 0.90 5.12 -3.83 -0.02 0.88 16 24 C -0.21 -2.48 8.78 -39.23 -0.34 -2.83 16 25 C 0.13 1.54 11.13 -17.57 -0.20 1.34 16 26 N -0.46 -6.60 10.12 -11.00 -0.11 -6.71 16 27 C 0.12 1.65 6.62 -84.76 -0.56 1.09 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.13 0.97 6.25 -52.49 -0.33 0.64 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.14 1.80 7.59 -52.48 -0.40 1.40 16 34 H 0.04 0.52 7.61 -51.93 -0.40 0.13 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.47 7.05 -51.93 -0.37 1.10 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 45 H 0.04 0.50 7.39 -51.93 -0.38 0.11 16 46 H 0.14 1.44 7.25 -52.49 -0.38 1.06 16 47 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -31.56 374.96 -10.34 -41.90 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.20 Total: -1.21 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.54 Total: -18.75 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.03 Total: -40.19 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.56 -10.34 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574448739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.662 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds