Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35874 * 116.99770 * 2 1 4 4 C 1.37617 * 120.22869 * 359.97438 * 3 2 1 5 5 C 1.39173 * 120.82467 * 180.02562 * 4 3 2 6 6 C 1.36260 * 120.87625 * 0.25766 * 5 4 3 7 7 C 1.40182 * 119.88624 * 359.44786 * 6 5 4 8 8 C 1.41577 * 121.27403 * 180.26972 * 7 6 5 9 9 N 1.38712 * 121.04683 * 0.34019 * 8 7 6 10 10 C 1.46851 * 111.00214 * 244.18477 * 9 8 7 11 11 C 1.53034 * 109.52098 * 174.15870 * 10 9 8 12 12 C 1.53119 * 109.28049 * 59.18513 * 11 10 9 13 13 C 1.52994 * 109.52617 * 182.43874 * 12 11 10 14 14 C 1.50706 * 109.47146 * 294.68096 * 13 12 11 15 15 H 1.08006 * 119.99557 * 359.97438 * 14 13 12 16 16 C 1.37868 * 120.00407 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99990 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47181 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47192 * 119.99915 * 18 16 14 21 21 H 1.48506 * 109.46987 * 239.99828 * 18 16 14 22 22 C 1.53121 * 109.15852 * 302.34172 * 12 11 10 23 23 C 1.46850 * 111.00016 * 119.97797 * 9 8 7 24 24 C 1.38539 * 117.90921 * 180.31605 * 8 7 6 25 25 C 1.38878 * 119.68293 * 0.02562 * 24 8 7 26 26 N 1.31237 * 121.83758 * 359.97176 * 25 24 8 27 27 C 1.33770 * 121.68050 * 0.02746 * 26 25 24 28 28 H 1.08998 * 109.47080 * 60.00545 * 1 2 3 29 29 H 1.09002 * 109.47031 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47020 * 300.00302 * 1 2 3 31 31 H 1.08000 * 119.58339 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.55740 * 179.97438 * 5 4 3 33 33 H 1.08005 * 120.05216 * 179.72394 * 6 5 4 34 34 H 1.08992 * 109.46076 * 294.17941 * 10 9 8 35 35 H 1.09001 * 109.45648 * 54.14536 * 10 9 8 36 36 H 1.08997 * 109.50962 * 299.23590 * 11 10 9 37 37 H 1.08999 * 109.49929 * 179.12029 * 11 10 9 38 38 H 1.08996 * 109.52276 * 62.24388 * 12 11 10 39 39 H 1.09004 * 109.47476 * 54.67807 * 13 12 11 40 40 H 1.08994 * 109.47739 * 174.68256 * 13 12 11 41 41 H 0.96999 * 119.99783 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.50219 * 297.71507 * 22 12 11 43 43 H 1.09000 * 109.50551 * 177.59832 * 22 12 11 44 44 H 1.09002 * 109.45896 * 305.85060 * 23 9 8 45 45 H 1.08995 * 109.46810 * 65.82238 * 23 9 8 46 46 H 1.07999 * 120.15957 * 179.97438 * 24 8 7 47 47 H 1.08006 * 119.07542 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.3009 2.3678 -0.0005 5 6 1.9198 3.6143 -0.0011 6 6 3.2782 3.7206 -0.0063 7 6 4.0694 2.5635 0.0004 8 6 5.4831 2.6398 0.0009 9 7 6.1335 3.8650 0.0017 10 6 6.9079 4.0506 -1.2321 11 6 7.4910 5.4652 -1.2619 12 6 8.3889 5.6679 -0.0382 13 6 8.9265 7.1002 -0.0301 14 6 9.8318 7.3038 -1.2177 15 1 10.0064 6.4924 -1.9088 16 6 10.4377 8.5253 -1.4213 17 7 10.2255 9.5132 -0.5793 18 14 11.5592 8.7778 -2.8937 19 1 11.6315 7.5214 -3.6820 20 1 11.0192 9.8672 -3.7462 21 1 12.9189 9.1453 -2.4231 22 6 7.5703 5.4214 1.2321 23 6 6.9849 4.0080 1.1896 24 6 6.1966 1.4522 0.0010 25 6 5.5166 0.2413 0.0001 26 7 4.2054 0.1837 -0.0003 27 6 3.4536 1.2901 -0.0004 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2226 2.3077 -0.0014 32 1 1.3152 4.5093 -0.0019 33 1 3.7445 4.6949 -0.0112 34 1 7.7186 3.3228 -1.2649 35 1 6.2567 3.9079 -2.0944 36 1 6.6803 6.1936 -1.2430 37 1 8.0786 5.5975 -2.1703 38 1 9.2214 4.9655 -0.0771 39 1 8.0936 7.8013 -0.0838 40 1 9.4878 7.2725 0.8882 41 1 10.6516 10.3727 -0.7228 42 1 6.7608 6.1490 1.2903 43 1 8.2145 5.5224 2.1055 44 1 6.3896 3.8345 2.0861 45 1 7.7953 3.2805 1.1455 46 1 7.2765 1.4680 0.0009 47 1 6.0826 -0.6785 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574448739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = -3.785358 kcal Electronic energy + Delta-G solvation = -27293.754950 eV Core-core repulsion = 23633.475084 eV Total energy + Delta-G solvation = -3660.279865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21790 -40.59750 -39.40084 -37.40290 -36.54735 -34.54550 -32.37339 -31.82191 -31.69163 -30.35607 -29.17547 -28.18964 -26.15757 -24.67419 -24.48615 -24.01064 -22.81951 -21.92922 -20.53270 -19.26714 -19.03606 -18.42675 -18.16535 -17.08655 -16.77589 -16.67185 -16.45198 -16.04675 -15.77226 -15.49182 -15.15890 -14.99571 -14.84114 -14.64387 -14.34250 -14.28982 -14.10361 -13.69935 -13.27539 -13.04739 -12.94617 -12.85046 -12.80969 -12.69378 -12.54490 -12.22826 -12.14295 -12.06014 -11.99934 -11.70555 -11.28410 -10.95706 -10.80317 -10.70250 -10.57043 -10.50868 -9.85662 -9.54758 -8.68669 -8.15685 -6.24566 -0.61029 -0.21573 0.92654 1.40191 1.41256 1.53287 1.96284 2.17251 2.42889 2.71339 3.04570 3.17952 3.25430 3.76995 3.84179 3.88462 3.94361 4.01493 4.02705 4.10302 4.26099 4.32512 4.35692 4.41487 4.42092 4.46443 4.48641 4.58750 4.62619 4.68336 4.75566 4.84607 4.87720 4.94788 5.02350 5.05094 5.17027 5.27722 5.37786 5.40144 5.46261 5.46783 5.55574 5.59366 5.73864 5.81505 5.91142 5.94104 6.27649 6.32843 6.33353 6.92351 6.93297 7.43845 8.96282 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002482 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.924078 B =11280.726209 C =11620.191946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.131 3.869 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.069 4.069 8 C 0.148 3.852 9 N -0.506 5.506 10 C 0.074 3.926 11 C -0.092 4.092 12 C -0.073 4.073 13 C 0.034 3.966 14 C -0.525 4.525 15 H 0.062 0.938 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.958 3.042 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.104 4.104 23 C 0.073 3.927 24 C -0.200 4.200 25 C 0.128 3.872 26 N -0.487 5.487 27 C 0.090 3.910 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.137 0.863 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.054 0.946 39 H -0.011 1.011 40 H -0.013 1.013 41 H 0.261 0.739 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.152 0.848 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.592 -18.955 1.843 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.233 6.233 3 C 0.084 3.916 4 C -0.219 4.219 5 C -0.099 4.099 6 C -0.145 4.145 7 C -0.072 4.072 8 C 0.045 3.955 9 N -0.228 5.228 10 C -0.052 4.052 11 C -0.130 4.130 12 C -0.092 4.092 13 C -0.003 4.003 14 C -0.563 4.563 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.783 3.217 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.142 4.142 23 C -0.052 4.052 24 C -0.222 4.222 25 C -0.044 4.044 26 N -0.195 5.195 27 C -0.033 4.033 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.180 0.820 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.007 0.993 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.170 0.830 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -19.349 -19.381 1.888 27.452 hybrid contribution 1.693 1.088 -0.576 2.093 sum -17.656 -18.293 1.312 25.458 Atomic orbital electron populations 1.23437 0.76248 1.05722 1.02585 1.86147 1.23367 1.26054 1.87684 1.18871 0.89657 0.85842 0.97221 1.21450 1.01562 0.91036 1.07804 1.21015 0.94343 0.98017 0.96490 1.21009 0.94020 0.97875 1.01586 1.18628 0.93181 0.93788 1.01565 1.19084 0.91933 0.89450 0.95072 1.59072 1.31930 1.27866 1.03949 1.22135 0.95473 0.97204 0.90365 1.21417 0.98050 0.95085 0.98416 1.21085 0.96407 0.97200 0.94512 1.19002 0.94202 0.92154 0.94980 1.21688 1.27225 0.97116 1.10315 0.92019 1.25935 0.98572 0.96138 0.99380 1.70111 1.45523 1.03428 1.38574 0.85501 0.78394 0.78398 0.79382 1.18489 1.20718 1.20752 1.21592 0.98907 0.95905 0.97814 1.22121 0.94671 0.97078 0.91377 1.22938 1.02706 0.93522 1.03020 1.23191 0.89443 0.98619 0.93183 1.68027 1.07928 1.30679 1.12881 1.18366 0.92077 0.88895 1.03936 0.91288 0.86433 0.91244 0.81970 0.82623 0.84561 0.93447 0.90609 0.92866 0.91904 0.92799 0.99280 0.99456 0.93043 0.92320 0.91380 0.90174 0.93241 0.83017 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -7.19 10.29 -92.13 -0.95 -8.13 16 3 C 0.13 3.15 6.74 22.80 0.15 3.30 16 4 C -0.20 -3.63 9.02 22.35 0.20 -3.43 16 5 C -0.08 -1.53 9.95 22.03 0.22 -1.31 16 6 C -0.13 -3.03 9.55 22.28 0.21 -2.82 16 7 C -0.07 -1.84 5.75 -21.19 -0.12 -1.96 16 8 C 0.15 3.81 4.69 38.95 0.18 3.99 16 9 N -0.51 -13.66 3.83 -693.99 -2.66 -16.32 16 10 C 0.07 2.08 5.17 86.32 0.45 2.53 16 11 C -0.09 -3.24 5.15 30.65 0.16 -3.08 16 12 C -0.07 -2.84 2.20 -10.72 -0.02 -2.87 16 13 C 0.03 1.72 4.45 29.85 0.13 1.86 16 14 C -0.53 -28.98 8.44 25.60 0.22 -28.77 16 15 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 16 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 17 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16 18 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 C -0.10 -3.37 5.38 30.65 0.16 -3.21 16 23 C 0.07 1.94 5.12 86.33 0.44 2.38 16 24 C -0.20 -4.44 8.78 22.50 0.20 -4.24 16 25 C 0.13 2.81 11.13 84.94 0.95 3.76 16 26 N -0.49 -13.45 10.12 -188.70 -1.91 -15.36 16 27 C 0.09 2.49 6.62 40.32 0.27 2.75 16 28 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 31 H 0.16 1.83 6.25 -2.91 -0.02 1.81 16 32 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.14 3.39 7.59 -2.91 -0.02 3.37 16 34 H 0.05 1.25 7.61 -2.39 -0.02 1.23 16 35 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.38 7.05 -2.39 -0.02 2.37 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 45 H 0.05 1.21 7.39 -2.39 -0.02 1.19 16 46 H 0.15 2.80 7.25 -2.91 -0.02 2.78 16 47 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.02 374.96 3.12 -66.90 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.96 Total: 12.93 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 5.37 Total: -29.56 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -4.28 Total: -88.17 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.95 Total: -8.13 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.02 3.12 -66.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574448739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.115 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds