Wall clock time and date at job start Tue Mar 31 2020 15:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30111 * 124.95050 * 2 1 4 4 C 1.35784 * 109.64223 * 180.26518 * 3 2 1 5 5 C 1.39751 * 133.59908 * 179.74272 * 4 3 2 6 6 C 1.36598 * 119.88306 * 180.02562 * 5 4 3 7 7 C 1.38773 * 120.67033 * 359.95731 * 6 5 4 8 8 C 1.37861 * 120.45600 * 0.02562 * 7 6 5 9 9 C 1.38829 * 119.68532 * 0.02562 * 8 7 6 10 10 N 1.36032 * 124.95012 * 179.85619 * 2 1 3 11 11 C 1.46502 * 126.35101 * 0.02562 * 10 2 1 12 12 C 1.52999 * 109.46990 * 269.69143 * 11 10 2 13 13 C 1.53004 * 109.46862 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47074 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99779 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.46858 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47753 * 305.00128 * 16 15 14 18 18 C 1.47204 * 109.47042 * 64.99895 * 16 15 14 19 19 N 8.21597 * 68.76934 * 134.15339 * 2 1 3 20 20 C 1.52996 * 109.47153 * 184.99851 * 16 15 14 21 21 C 1.50702 * 109.47159 * 175.00123 * 20 16 15 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 16 23 23 C 1.37884 * 119.99942 * 179.72211 * 21 20 16 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 H 1.09001 * 109.47039 * 270.14682 * 1 2 3 30 30 H 1.09007 * 109.47271 * 30.14222 * 1 2 3 31 31 H 1.08998 * 109.47457 * 150.14511 * 1 2 3 32 32 H 1.07996 * 120.05326 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.66193 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.77432 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.15389 * 179.97438 * 8 7 6 36 36 H 1.08995 * 109.47588 * 149.68648 * 11 10 2 37 37 H 1.08998 * 109.46594 * 29.68769 * 11 10 2 38 38 H 1.08998 * 109.47108 * 60.00095 * 12 11 10 39 39 H 1.08998 * 109.47146 * 299.99287 * 12 11 10 40 40 H 1.09003 * 109.47140 * 59.99982 * 13 12 11 41 41 H 1.09004 * 109.47248 * 300.00133 * 13 12 11 42 42 H 1.00899 * 110.99585 * 303.95295 * 14 13 12 43 43 H 1.08997 * 109.46933 * 59.99775 * 15 14 13 44 44 H 1.08996 * 109.47325 * 299.99917 * 15 14 13 45 45 H 1.09004 * 109.47066 * 55.00326 * 20 16 15 46 46 H 1.08994 * 109.47405 * 295.00156 * 20 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7587 1.4297 -0.0131 6 6 5.9531 0.7669 -0.0185 7 6 5.9930 -0.6202 -0.0160 8 6 4.8252 -1.3528 -0.0086 9 6 3.6018 -0.6966 -0.0041 10 7 2.2862 -1.1150 0.0028 11 6 1.8166 -2.5027 0.0058 12 6 1.6599 -2.9850 1.4493 13 6 1.1688 -4.4340 1.4523 14 7 1.0177 -4.8969 2.8383 15 6 0.5471 -6.2879 2.8804 16 6 0.4029 -6.7336 4.3368 17 1 1.3466 -6.5781 4.8597 18 6 -0.6550 -5.9446 4.9889 19 7 -1.4682 -5.3347 5.4947 20 6 0.0335 -8.2176 4.3819 21 6 0.0116 -8.6866 5.8139 22 1 0.2381 -7.9953 6.6121 23 6 -0.3037 -9.9969 6.1055 24 7 -0.5799 -10.8386 5.1335 25 14 -0.3383 -10.5763 7.8810 26 1 0.0067 -9.4442 8.7779 27 1 -1.6976 -11.0738 8.2129 28 1 0.6480 -11.6714 8.0637 29 1 -0.3633 0.0026 1.0277 30 1 -0.3634 0.8888 -0.5161 31 1 -0.3634 -0.8912 -0.5116 32 1 4.7391 2.5095 -0.0144 33 1 6.8758 1.3283 -0.0244 34 1 6.9455 -1.1294 -0.0199 35 1 4.8619 -2.4322 -0.0071 36 1 2.5405 -3.1325 -0.5112 37 1 0.8546 -2.5617 -0.5034 38 1 0.9358 -2.3552 1.9662 39 1 2.6218 -2.9260 1.9585 40 1 1.8925 -5.0641 0.9352 41 1 0.2067 -4.4927 0.9432 42 1 1.8806 -4.7918 3.3506 43 1 1.2671 -6.9305 2.3737 44 1 -0.4189 -6.3600 2.3806 45 1 0.7712 -8.7928 3.8224 46 1 -0.9516 -8.3605 3.9377 47 1 -0.8013 -11.7605 5.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576508314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:33 Heat of formation + Delta-G solvation = 78.571485 kcal Electronic energy + Delta-G solvation = -25688.420683 eV Core-core repulsion = 22064.004829 eV Total energy + Delta-G solvation = -3624.415854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46923 -37.95417 -37.56482 -36.14951 -34.78367 -33.61944 -32.32218 -31.70540 -30.96950 -29.86684 -27.83275 -26.94592 -25.09374 -22.77220 -22.41146 -22.33295 -22.08856 -21.58086 -20.21915 -17.69307 -17.42162 -17.11668 -16.47700 -16.00314 -15.81203 -15.60469 -14.96186 -14.68716 -14.45661 -14.36222 -14.17744 -13.92986 -13.52299 -13.43254 -13.18610 -13.08142 -12.68267 -12.52194 -12.42331 -12.20592 -12.10397 -11.97947 -11.74135 -11.62016 -11.56895 -11.30982 -11.16855 -11.06352 -10.75514 -10.65611 -10.52471 -10.30691 -10.18112 -9.60809 -9.26866 -8.56008 -8.52170 -8.45582 -8.33878 -6.14639 -4.17800 0.68447 1.25584 2.24294 2.48940 3.25078 3.33598 3.38208 3.62231 3.68202 3.78053 3.85081 3.96159 4.18513 4.19089 4.37451 4.66580 4.68574 4.73297 4.76315 4.83658 4.87235 4.89823 5.04652 5.10196 5.13705 5.17773 5.23740 5.31447 5.35003 5.43931 5.46512 5.50444 5.63692 5.69996 5.82087 5.89093 5.93211 6.17718 6.24730 6.27446 6.29504 6.41996 6.61257 6.83651 6.94880 7.31775 7.36548 7.46735 7.64227 7.80820 8.17716 8.53001 8.87200 9.48053 10.96245 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.001871 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.518355 B =14965.006501 C =15546.855311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.286 3.714 3 N -0.499 5.499 4 C 0.047 3.953 5 C -0.067 4.067 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.108 4.108 9 C 0.047 3.953 10 N -0.486 5.486 11 C 0.111 3.889 12 C -0.135 4.135 13 C 0.064 3.936 14 N -0.694 5.694 15 C 0.067 3.933 16 C 0.009 3.991 17 H 0.099 0.901 18 C 0.254 3.746 19 N -0.478 5.478 20 C 0.031 3.969 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.891 5.891 25 Si 0.892 3.108 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.342 0.658 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.026 0.974 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 18.971 -16.453 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.021 3.979 3 N -0.219 5.219 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.150 4.150 7 C -0.125 4.125 8 C -0.129 4.129 9 C -0.062 4.062 10 N -0.176 5.176 11 C -0.012 4.012 12 C -0.173 4.173 13 C -0.066 4.066 14 N -0.325 5.325 15 C -0.063 4.063 16 C -0.013 4.013 17 H 0.117 0.883 18 C -0.063 4.063 19 N -0.154 5.154 20 C -0.007 4.007 21 C -0.565 4.565 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.160 0.840 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.959 20.678 -15.653 27.438 hybrid contribution 1.351 -2.127 0.582 2.586 sum 10.310 18.551 -15.071 26.030 Atomic orbital electron populations 1.20417 0.84262 1.04569 1.04547 1.23658 0.95813 0.80677 0.97739 1.70428 1.00910 1.27325 1.23239 1.19078 0.92090 0.90413 1.05592 1.20011 0.89232 0.99720 0.99723 1.20636 0.97422 0.94397 1.02521 1.20885 0.97251 0.94000 1.00408 1.19974 0.89124 0.99456 1.04304 1.18885 0.85403 0.95189 1.06696 1.45334 1.04528 1.07358 1.60337 1.21830 1.01720 0.78852 0.98796 1.21953 1.02955 0.97377 0.95047 1.21801 1.00629 0.93491 0.90701 1.60486 1.36660 1.22646 1.12679 1.22077 1.00989 0.86878 0.96330 1.19214 0.93239 0.96705 0.92124 0.88318 1.28827 0.93716 0.91393 0.92350 1.80964 1.11643 1.12506 1.10334 1.19173 0.98116 0.85117 0.98330 1.21180 1.47808 0.95381 0.92085 0.92431 1.24964 0.94904 0.96832 0.97341 1.69947 1.46806 1.04781 1.31468 0.86528 0.77763 0.78784 0.84967 1.19664 1.20938 1.20834 0.89084 0.88628 0.90103 0.85533 0.85453 0.85327 0.86085 0.89108 0.88547 0.90168 0.91220 0.94814 0.90627 0.84005 0.93164 0.90404 0.94456 0.95527 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.17 36.00 0.37 -0.15 16 2 C 0.29 2.95 7.85 -154.83 -1.22 1.74 16 3 N -0.50 -6.41 11.27 -8.23 -0.09 -6.50 16 4 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16 5 C -0.07 -0.68 10.05 -39.61 -0.40 -1.08 16 6 C -0.13 -1.04 9.96 -39.98 -0.40 -1.44 16 7 C -0.11 -0.83 10.03 -39.52 -0.40 -1.23 16 8 C -0.11 -0.97 10.05 -39.50 -0.40 -1.36 16 9 C 0.05 0.51 6.87 -83.99 -0.58 -0.07 16 10 N -0.49 -4.63 2.80 -111.16 -0.31 -4.94 16 11 C 0.11 0.73 5.93 -4.04 -0.02 0.71 16 12 C -0.13 -1.05 5.80 -26.73 -0.15 -1.20 16 13 C 0.06 0.54 5.69 -3.82 -0.02 0.52 16 14 N -0.69 -7.94 6.20 -113.78 -0.71 -8.65 16 15 C 0.07 0.90 5.05 -3.82 -0.02 0.88 16 16 C 0.01 0.16 2.35 -93.41 -0.22 -0.06 16 17 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 18 C 0.25 5.17 13.67 -20.78 -0.28 4.89 16 19 N -0.48 -10.67 18.53 42.13 0.78 -9.88 16 20 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 21 C -0.53 -13.77 8.60 -34.44 -0.30 -14.07 16 22 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 25 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 0.37 7.01 -51.93 -0.36 0.00 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.47 6.99 -51.93 -0.36 0.11 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.34 3.60 8.73 -39.29 -0.34 3.26 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -33.38 400.71 -10.81 -44.20 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.37 Total: -2.11 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -4.87 Total: -9.81 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.41 Total: -54.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.38 -10.81 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576508314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.769 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds