Wall clock time and date at job start Tue Mar 31 2020 15:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30111 * 124.95050 * 2 1 4 4 C 1.35784 * 109.64223 * 180.26518 * 3 2 1 5 5 C 1.39751 * 133.59908 * 179.74272 * 4 3 2 6 6 C 1.36598 * 119.88306 * 180.02562 * 5 4 3 7 7 C 1.38773 * 120.67033 * 359.95731 * 6 5 4 8 8 C 1.37861 * 120.45600 * 0.02562 * 7 6 5 9 9 C 1.38829 * 119.68532 * 0.02562 * 8 7 6 10 10 N 1.36032 * 124.95012 * 179.85619 * 2 1 3 11 11 C 1.46502 * 126.35101 * 0.02562 * 10 2 1 12 12 C 1.52999 * 109.46990 * 269.69143 * 11 10 2 13 13 C 1.53004 * 109.46862 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47074 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99779 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.46858 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47753 * 305.00128 * 16 15 14 18 18 C 1.47204 * 109.47042 * 64.99895 * 16 15 14 19 19 N 8.21597 * 68.76934 * 134.15339 * 2 1 3 20 20 C 1.52996 * 109.47153 * 184.99851 * 16 15 14 21 21 C 1.50702 * 109.47159 * 175.00123 * 20 16 15 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 16 23 23 C 1.37884 * 119.99942 * 179.72211 * 21 20 16 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 H 1.09001 * 109.47039 * 270.14682 * 1 2 3 30 30 H 1.09007 * 109.47271 * 30.14222 * 1 2 3 31 31 H 1.08998 * 109.47457 * 150.14511 * 1 2 3 32 32 H 1.07996 * 120.05326 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.66193 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.77432 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.15389 * 179.97438 * 8 7 6 36 36 H 1.08995 * 109.47588 * 149.68648 * 11 10 2 37 37 H 1.08998 * 109.46594 * 29.68769 * 11 10 2 38 38 H 1.08998 * 109.47108 * 60.00095 * 12 11 10 39 39 H 1.08998 * 109.47146 * 299.99287 * 12 11 10 40 40 H 1.09003 * 109.47140 * 59.99982 * 13 12 11 41 41 H 1.09004 * 109.47248 * 300.00133 * 13 12 11 42 42 H 1.00899 * 110.99585 * 303.95295 * 14 13 12 43 43 H 1.08997 * 109.46933 * 59.99775 * 15 14 13 44 44 H 1.08996 * 109.47325 * 299.99917 * 15 14 13 45 45 H 1.09004 * 109.47066 * 55.00326 * 20 16 15 46 46 H 1.08994 * 109.47405 * 295.00156 * 20 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0059 5 6 4.7587 1.4297 -0.0131 6 6 5.9531 0.7669 -0.0185 7 6 5.9930 -0.6202 -0.0160 8 6 4.8252 -1.3528 -0.0086 9 6 3.6018 -0.6966 -0.0041 10 7 2.2862 -1.1150 0.0028 11 6 1.8166 -2.5027 0.0058 12 6 1.6599 -2.9850 1.4493 13 6 1.1688 -4.4340 1.4523 14 7 1.0177 -4.8969 2.8383 15 6 0.5471 -6.2879 2.8804 16 6 0.4029 -6.7336 4.3368 17 1 1.3466 -6.5781 4.8597 18 6 -0.6550 -5.9446 4.9889 19 7 -1.4682 -5.3347 5.4947 20 6 0.0335 -8.2176 4.3819 21 6 0.0116 -8.6866 5.8139 22 1 0.2381 -7.9953 6.6121 23 6 -0.3037 -9.9969 6.1055 24 7 -0.5799 -10.8386 5.1335 25 14 -0.3383 -10.5763 7.8810 26 1 0.0067 -9.4442 8.7779 27 1 -1.6976 -11.0738 8.2129 28 1 0.6480 -11.6714 8.0637 29 1 -0.3633 0.0026 1.0277 30 1 -0.3634 0.8888 -0.5161 31 1 -0.3634 -0.8912 -0.5116 32 1 4.7391 2.5095 -0.0144 33 1 6.8758 1.3283 -0.0244 34 1 6.9455 -1.1294 -0.0199 35 1 4.8619 -2.4322 -0.0071 36 1 2.5405 -3.1325 -0.5112 37 1 0.8546 -2.5617 -0.5034 38 1 0.9358 -2.3552 1.9662 39 1 2.6218 -2.9260 1.9585 40 1 1.8925 -5.0641 0.9352 41 1 0.2067 -4.4927 0.9432 42 1 1.8806 -4.7918 3.3506 43 1 1.2671 -6.9305 2.3737 44 1 -0.4189 -6.3600 2.3806 45 1 0.7712 -8.7928 3.8224 46 1 -0.9516 -8.3605 3.9377 47 1 -0.8013 -11.7605 5.3386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576508314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:32 Heat of formation + Delta-G solvation = 59.826740 kcal Electronic energy + Delta-G solvation = -25689.233516 eV Core-core repulsion = 22064.004829 eV Total energy + Delta-G solvation = -3625.228687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.15489 -38.93844 -38.41781 -37.24197 -35.89808 -35.25392 -33.66650 -32.40139 -31.88962 -30.71304 -28.50504 -28.33964 -26.14787 -24.05783 -23.47760 -23.10315 -23.00045 -22.49606 -20.87853 -18.66235 -18.39517 -18.29221 -17.96124 -16.74900 -16.67290 -16.54410 -16.22749 -15.69709 -15.60852 -15.25464 -14.98379 -14.79556 -14.59163 -14.27592 -14.17542 -13.96305 -13.75828 -13.69505 -13.50066 -13.36039 -13.18491 -13.02912 -12.81241 -12.75155 -12.61227 -12.49450 -12.38007 -12.22905 -12.19292 -11.92541 -11.77753 -11.44946 -11.30701 -11.09045 -10.92741 -10.56142 -9.31954 -9.23962 -9.04231 -8.20530 -6.28121 0.00974 0.57703 1.38062 1.41801 1.51618 1.61679 1.78288 2.08051 2.14630 2.40759 2.92398 3.13690 3.16092 3.22969 3.35831 3.54059 3.67603 4.05259 4.09653 4.13574 4.17714 4.21215 4.28931 4.35553 4.41449 4.46931 4.50825 4.53693 4.64794 4.71495 4.75901 4.79526 4.84073 4.91433 4.98107 5.03468 5.05926 5.20073 5.27798 5.47229 5.50582 5.59956 5.61226 5.62804 5.79110 5.99313 6.03185 6.20265 6.22947 6.50335 6.83395 6.91422 6.93982 7.40506 8.90375 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.001871 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.518355 B =14965.006501 C =15546.855311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.277 3.723 3 N -0.541 5.541 4 C 0.009 3.991 5 C -0.091 4.091 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.115 4.115 9 C 0.029 3.971 10 N -0.485 5.485 11 C 0.110 3.890 12 C -0.121 4.121 13 C 0.068 3.932 14 N -0.706 5.706 15 C 0.081 3.919 16 C 0.018 3.982 17 H 0.118 0.882 18 C 0.265 3.735 19 N -0.516 5.516 20 C 0.037 3.963 21 C -0.538 4.538 22 H 0.053 0.947 23 C 0.011 3.989 24 N -0.922 5.922 25 Si 0.947 3.053 26 H -0.271 1.271 27 H -0.286 1.286 28 H -0.272 1.272 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.348 0.652 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.001 0.999 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.686 18.442 -17.074 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.012 3.988 3 N -0.262 5.262 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.145 4.145 7 C -0.125 4.125 8 C -0.136 4.136 9 C -0.080 4.080 10 N -0.175 5.175 11 C -0.011 4.011 12 C -0.160 4.160 13 C -0.062 4.062 14 N -0.339 5.339 15 C -0.050 4.050 16 C -0.003 4.003 17 H 0.136 0.864 18 C -0.051 4.051 19 N -0.194 5.194 20 C -0.002 4.002 21 C -0.576 4.576 22 H 0.071 0.929 23 C -0.188 4.188 24 N -0.562 5.562 25 Si 0.773 3.227 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.167 0.833 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.020 0.980 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.452 20.150 -16.277 27.932 hybrid contribution 0.934 -1.935 0.771 2.283 sum 11.386 18.216 -15.505 26.493 Atomic orbital electron populations 1.20551 0.82049 1.05895 1.05049 1.24272 0.97069 0.80616 0.96842 1.70371 1.01752 1.29042 1.25084 1.19534 0.92485 0.91797 1.07022 1.20264 0.89645 1.00140 1.00987 1.20997 0.97645 0.94966 1.00861 1.21310 0.98211 0.93991 0.98950 1.20313 0.88714 1.00585 1.03967 1.19208 0.86539 0.94969 1.07263 1.45481 1.04045 1.08096 1.59832 1.22004 1.03253 0.77626 0.98236 1.21784 1.01878 0.96740 0.95627 1.21823 1.01507 0.93780 0.89075 1.60405 1.37400 1.21214 1.14837 1.21851 1.01558 0.88486 0.93062 1.19210 0.92816 0.93223 0.95097 0.86425 1.29397 0.93460 0.90823 0.91441 1.80964 1.12812 1.13850 1.11765 1.18996 0.96775 0.88333 0.96053 1.21597 1.46827 0.95333 0.93869 0.92916 1.25700 0.95033 0.97341 1.00743 1.70030 1.48005 1.05095 1.33090 0.85666 0.77653 0.78470 0.80907 1.19510 1.21214 1.19774 0.88836 0.88285 0.87797 0.85357 0.82781 0.82377 0.84140 0.87510 0.86491 0.91883 0.92046 0.92928 0.90161 0.83334 0.91185 0.90939 0.94435 0.98016 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.17 71.23 0.72 -0.23 16 2 C 0.28 5.72 7.85 137.92 1.08 6.80 16 3 N -0.54 -14.49 11.27 -179.96 -2.03 -16.52 16 4 C 0.01 0.24 7.23 39.45 0.29 0.52 16 5 C -0.09 -1.87 10.05 22.25 0.22 -1.64 16 6 C -0.12 -1.85 9.96 22.01 0.22 -1.63 16 7 C -0.11 -1.42 10.03 22.31 0.22 -1.20 16 8 C -0.12 -1.87 10.05 22.32 0.22 -1.64 16 9 C 0.03 0.62 6.87 38.86 0.27 0.89 16 10 N -0.48 -8.81 2.80 -505.61 -1.42 -10.23 16 11 C 0.11 1.21 5.93 86.38 0.51 1.72 16 12 C -0.12 -1.65 5.80 30.60 0.18 -1.47 16 13 C 0.07 0.94 5.69 86.30 0.49 1.43 16 14 N -0.71 -14.45 6.20 -513.88 -3.19 -17.64 16 15 C 0.08 1.97 5.05 86.30 0.44 2.40 16 16 C 0.02 0.61 2.35 -12.60 -0.03 0.58 16 17 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 18 C 0.26 10.57 13.67 89.45 1.22 11.79 16 19 N -0.52 -22.90 18.53 20.00 0.37 -22.53 16 20 C 0.04 1.64 4.42 29.85 0.13 1.78 16 21 C -0.54 -27.90 8.60 25.60 0.22 -27.68 16 22 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 23 C 0.01 0.58 5.46 84.66 0.46 1.04 16 24 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 25 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 0.75 7.01 -2.39 -0.02 0.73 16 32 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 0.80 6.99 -2.39 -0.02 0.78 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.35 6.43 8.73 -89.69 -0.78 5.65 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -73.34 400.71 3.11 -70.23 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.18 Total: 9.93 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 6.87 Total: -6.53 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -5.98 Total: -118.57 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.34 3.11 -70.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576508314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.062 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds