Wall clock time and date at job start Tue Mar 31 2020 14:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47416 * 65.00090 * 19 18 17 21 21 C 1.35892 * 117.00420 * 180.02562 * 20 19 18 22 22 C 1.38777 * 120.04140 * 359.72355 * 21 20 19 23 23 C 1.38132 * 119.99218 * 179.74583 * 22 21 20 24 24 C 1.38248 * 120.08254 * 0.52889 * 23 22 21 25 25 C 1.38474 * 120.08632 * 359.74642 * 24 23 22 26 26 F 1.35100 * 120.00259 * 179.97438 * 25 24 23 27 27 C 1.38383 * 120.00471 * 359.97438 * 25 24 23 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 40 40 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 41 41 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 42 42 H 1.09002 * 109.46949 * 184.99940 * 19 18 17 43 43 H 1.08998 * 109.47226 * 304.99930 * 19 18 17 44 44 H 1.07998 * 119.99993 * 0.02562 * 22 21 20 45 45 H 1.08004 * 119.95876 * 180.27142 * 23 22 21 46 46 H 1.08002 * 119.96060 * 179.76408 * 24 23 22 47 47 H 1.07998 * 120.04686 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 8 0.3260 -6.7106 -3.1692 21 6 -0.2729 -7.9265 -3.0707 22 6 0.4943 -9.0641 -2.8632 23 6 -0.1160 -10.2988 -2.7580 24 6 -1.4898 -10.4045 -2.8699 25 6 -2.2581 -9.2723 -3.0826 26 9 -3.6005 -9.3776 -3.1922 27 6 -1.6510 -8.0328 -3.1828 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 0.7237 -4.4873 -2.0027 40 1 1.8742 -4.8135 -4.1181 41 1 3.3283 -5.2165 -3.1739 42 1 2.1977 -7.2876 -3.8268 43 1 2.0373 -7.0669 -2.0678 44 1 1.5681 -8.9835 -2.7796 45 1 0.4813 -11.1833 -2.5922 46 1 -1.9646 -11.3714 -2.7911 47 1 -2.2496 -7.1492 -3.3483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577602172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:06 Heat of formation + Delta-G solvation = -100.898671 kcal Electronic energy + Delta-G solvation = -26505.057359 eV Core-core repulsion = 22409.797119 eV Total energy + Delta-G solvation = -4095.260239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.30419 -40.54942 -38.38872 -37.76170 -36.00952 -34.96265 -32.50362 -31.67055 -30.77691 -29.97978 -28.57265 -27.02598 -25.69771 -23.92572 -23.30585 -23.10146 -21.74942 -21.22819 -20.12803 -19.05015 -17.10527 -16.76683 -16.66748 -16.61644 -16.38317 -16.18349 -15.92089 -15.62019 -15.13590 -14.89505 -14.64220 -14.50481 -14.26654 -14.18183 -13.59314 -13.51246 -13.23948 -12.84743 -12.65465 -12.55454 -12.22016 -12.07505 -11.95173 -11.83208 -11.42315 -11.28634 -11.27989 -11.10533 -10.88935 -10.74594 -10.62319 -10.27971 -9.95611 -9.55666 -9.33705 -9.09506 -8.74685 -8.60110 -8.41969 -7.18186 -6.01532 -4.02363 0.67724 0.84357 2.60595 3.14086 3.33996 3.39511 3.43894 3.79122 3.91950 4.24015 4.43815 4.49706 4.54567 4.57423 4.67219 4.77367 4.83609 4.85335 4.91789 4.93178 5.16365 5.26004 5.31364 5.34537 5.43949 5.49103 5.56362 5.63166 5.63648 5.68814 5.75642 5.86052 6.06248 6.20385 6.25908 6.31568 6.42086 6.72701 6.78499 6.89676 7.16727 7.27980 7.33784 7.81967 8.06070 8.16222 8.22621 8.57048 9.05809 9.61856 11.09448 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.001708 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.366631 B =16389.111003 C =17070.420803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.024 3.976 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.535 6.535 16 C 0.026 3.974 17 N -0.678 5.678 18 C 0.060 3.940 19 C 0.059 3.941 20 O -0.311 6.311 21 C 0.167 3.833 22 C -0.220 4.220 23 C -0.050 4.050 24 C -0.196 4.196 25 C 0.139 3.861 26 F -0.135 7.135 27 C -0.192 4.192 28 H 0.008 0.992 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.368 0.632 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.349 0.651 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -28.807 -11.957 31.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.109 0.891 15 O -0.339 6.339 16 C -0.104 4.104 17 N -0.310 5.310 18 C -0.069 4.069 19 C -0.016 4.016 20 O -0.224 6.224 21 C 0.121 3.879 22 C -0.239 4.239 23 C -0.068 4.068 24 C -0.215 4.215 25 C 0.119 3.881 26 F -0.113 7.113 27 C -0.212 4.212 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.214 0.786 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.810 -28.948 -11.031 31.106 hybrid contribution -0.453 1.348 -0.954 1.712 sum -3.263 -27.600 -11.985 30.267 Atomic orbital electron populations 1.22238 0.89008 0.99187 1.00681 1.62022 1.06828 1.17375 1.39048 1.19755 0.95263 0.81629 0.96627 1.21176 1.34633 0.96837 1.01674 0.91772 1.25001 0.95361 0.97357 0.97035 1.69961 1.38602 1.11437 1.34071 0.86477 0.78904 0.78320 0.83587 1.20613 1.21383 1.19841 1.22720 1.00528 0.93926 0.93417 1.21856 0.98181 0.90757 0.83541 0.89054 1.86594 1.24852 1.84926 1.37499 1.22750 1.01136 0.88134 0.98379 1.60431 1.17332 1.10474 1.42799 1.22022 1.00530 0.91081 0.93282 1.23029 0.77803 0.98511 1.02235 1.86047 1.22936 1.26839 1.86549 1.18580 0.91384 0.84515 0.93456 1.21362 1.00760 0.92502 1.09251 1.20794 0.93602 0.97326 0.95102 1.21057 0.94498 0.98071 1.07852 1.17297 0.77140 0.93718 0.99896 1.91526 1.29656 1.96858 1.93255 1.20291 0.93009 0.97727 1.10139 0.97322 0.93509 0.90803 0.95374 0.99334 0.92985 0.95566 0.91163 0.78571 0.94507 0.90537 0.83283 0.94209 0.88813 0.91331 0.90418 0.84673 0.84649 0.84621 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.16 60.06 0.55 1.30 16 2 N -0.53 -11.54 4.62 -244.36 -1.13 -12.67 16 3 C 0.19 5.07 4.72 -4.97 -0.02 5.04 16 4 C -0.50 -14.41 8.52 -34.44 -0.29 -14.70 16 5 H 0.06 1.83 7.10 -52.48 -0.37 1.46 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.40 16 13 C 0.12 1.67 3.02 -26.73 -0.08 1.59 16 14 H 0.09 1.37 6.47 -51.93 -0.34 1.03 16 15 O -0.54 -8.49 13.15 -35.23 -0.46 -8.95 16 16 C 0.03 0.29 5.32 -3.83 -0.02 0.27 16 17 N -0.68 -6.97 6.45 -113.78 -0.73 -7.70 16 18 C 0.06 0.46 6.10 -3.82 -0.02 0.44 16 19 C 0.06 0.41 5.08 37.16 0.19 0.60 16 20 O -0.31 -2.82 9.65 -19.40 -0.19 -3.01 16 21 C 0.17 1.47 6.69 -39.22 -0.26 1.21 16 22 C -0.22 -1.53 9.04 -39.42 -0.36 -1.89 16 23 C -0.05 -0.31 10.04 -39.62 -0.40 -0.70 16 24 C -0.20 -1.39 10.02 -39.49 -0.40 -1.78 16 25 C 0.14 1.23 7.30 -39.44 -0.29 0.94 16 26 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 27 C -0.19 -1.75 9.97 -39.37 -0.39 -2.14 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.82 6.30 -51.93 -0.33 0.49 16 30 H 0.07 1.60 6.86 -51.93 -0.36 1.24 16 31 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 35 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 36 H 0.37 4.85 9.04 45.56 0.41 5.26 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.35 3.80 8.29 -39.29 -0.33 3.48 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.34 7.65 -51.93 -0.40 -0.06 16 43 H 0.08 0.54 7.67 -51.93 -0.40 0.14 16 44 H 0.14 0.69 6.30 -52.49 -0.33 0.36 16 45 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 46 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -32.53 391.32 -9.39 -41.92 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.62 Total: 3.10 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.91 Total: -8.01 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -1.13 Total: -46.59 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.65 Total: -11.96 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.53 -9.39 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577602172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.982 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds