Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 O 1.42897 * 109.47416 * 65.00090 * 19 18 17 21 21 C 1.35892 * 117.00420 * 180.02562 * 20 19 18 22 22 C 1.38777 * 120.04140 * 359.72355 * 21 20 19 23 23 C 1.38132 * 119.99218 * 179.74583 * 22 21 20 24 24 C 1.38248 * 120.08254 * 0.52889 * 23 22 21 25 25 C 1.38474 * 120.08632 * 359.74642 * 24 23 22 26 26 F 1.35100 * 120.00259 * 179.97438 * 25 24 23 27 27 C 1.38383 * 120.00471 * 359.97438 * 25 24 23 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 40 40 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 41 41 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 42 42 H 1.09002 * 109.46949 * 184.99940 * 19 18 17 43 43 H 1.08998 * 109.47226 * 304.99930 * 19 18 17 44 44 H 1.07998 * 119.99993 * 0.02562 * 22 21 20 45 45 H 1.08004 * 119.95876 * 180.27142 * 23 22 21 46 46 H 1.08002 * 119.96060 * 179.76408 * 24 23 22 47 47 H 1.07998 * 120.04686 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 8 0.3260 -6.7106 -3.1692 21 6 -0.2729 -7.9265 -3.0707 22 6 0.4943 -9.0641 -2.8632 23 6 -0.1160 -10.2988 -2.7580 24 6 -1.4898 -10.4045 -2.8699 25 6 -2.2581 -9.2723 -3.0826 26 9 -3.6005 -9.3776 -3.1922 27 6 -1.6510 -8.0328 -3.1828 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 0.7237 -4.4873 -2.0027 40 1 1.8742 -4.8135 -4.1181 41 1 3.3283 -5.2165 -3.1739 42 1 2.1977 -7.2876 -3.8268 43 1 2.0373 -7.0669 -2.0678 44 1 1.5681 -8.9835 -2.7796 45 1 0.4813 -11.1833 -2.5922 46 1 -1.9646 -11.3714 -2.7911 47 1 -2.2496 -7.1492 -3.3483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577602172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = -125.706607 kcal Electronic energy + Delta-G solvation = -26506.133111 eV Core-core repulsion = 22409.797119 eV Total energy + Delta-G solvation = -4096.335992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.98301 -41.11907 -39.57938 -38.45742 -37.34520 -36.04461 -34.61270 -32.36124 -31.56544 -30.71630 -29.77230 -28.79718 -27.14211 -25.21144 -24.08236 -23.80542 -22.71718 -22.31513 -21.68107 -19.62926 -18.57127 -17.81822 -17.47971 -17.31469 -17.15310 -17.02322 -16.92329 -16.73811 -16.51936 -15.99854 -15.89023 -15.68268 -15.31168 -15.07908 -14.82184 -14.70906 -14.33064 -13.89942 -13.80825 -13.35002 -13.31510 -13.17870 -12.96219 -12.82158 -12.76258 -12.61012 -12.54446 -12.50202 -12.38993 -12.00601 -11.93300 -11.82424 -11.61404 -11.39247 -10.63806 -10.62007 -9.92266 -9.37884 -9.31101 -8.96660 -8.21320 -6.31109 0.10265 0.28562 1.40773 1.42343 1.53528 2.05187 2.39876 2.58576 2.91181 3.11043 3.34843 3.42364 3.71306 3.75891 3.92050 3.97653 4.01346 4.09324 4.14716 4.20828 4.28736 4.30539 4.37670 4.41915 4.48010 4.53471 4.67141 4.71192 4.76223 4.77335 4.83929 4.99569 5.05202 5.08756 5.14604 5.17152 5.21738 5.30639 5.33871 5.64321 5.71377 5.96615 6.05096 6.30612 6.32513 6.36822 6.63537 6.84911 7.06617 7.38586 8.89568 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.001708 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.366631 B =16389.111003 C =17070.420803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.085 0.915 15 O -0.554 6.554 16 C 0.038 3.962 17 N -0.686 5.686 18 C 0.061 3.939 19 C 0.059 3.941 20 O -0.328 6.328 21 C 0.152 3.848 22 C -0.218 4.218 23 C -0.046 4.046 24 C -0.196 4.196 25 C 0.118 3.882 26 F -0.146 7.146 27 C -0.212 4.212 28 H 0.009 0.991 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.006 0.994 32 H -0.039 1.039 33 H 0.265 0.735 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.379 0.621 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.343 0.657 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.157 0.843 45 H 0.169 0.831 46 H 0.154 0.846 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -30.735 -11.685 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.106 4.106 13 C 0.069 3.931 14 H 0.103 0.897 15 O -0.359 6.359 16 C -0.092 4.092 17 N -0.318 5.318 18 C -0.068 4.068 19 C -0.016 4.016 20 O -0.242 6.242 21 C 0.105 3.895 22 C -0.237 4.237 23 C -0.063 4.063 24 C -0.215 4.215 25 C 0.099 3.901 26 F -0.124 7.124 27 C -0.231 4.231 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.024 0.976 32 H -0.022 1.022 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.227 0.773 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.161 0.839 40 H 0.057 0.943 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.175 0.825 45 H 0.186 0.814 46 H 0.172 0.828 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.051 -30.904 -10.771 32.791 hybrid contribution -0.657 1.884 -1.085 2.271 sum -2.707 -29.020 -11.855 31.465 Atomic orbital electron populations 1.22203 0.88025 1.00709 0.99735 1.61932 1.07825 1.14887 1.41661 1.19413 0.93744 0.83892 0.94877 1.21472 1.34827 0.97513 1.02409 0.92171 1.25913 0.95043 0.98020 1.00730 1.70078 1.39403 1.11892 1.36093 0.85375 0.78931 0.77237 0.79024 1.19778 1.20646 1.19064 1.22841 1.00470 0.95343 0.91917 1.21717 0.97924 0.88931 0.84569 0.89676 1.86557 1.26006 1.84885 1.38436 1.22541 1.01593 0.88331 0.96736 1.60436 1.17029 1.10015 1.44311 1.22121 1.01388 0.91111 0.92206 1.23135 0.76959 0.98290 1.03188 1.86018 1.24102 1.27311 1.86790 1.18734 0.91363 0.85112 0.94245 1.21671 1.01785 0.92114 1.08115 1.21206 0.93364 0.98203 0.93567 1.21362 0.95069 0.98172 1.06913 1.17553 0.76928 0.94429 1.01210 1.91491 1.30484 1.96928 1.93519 1.20376 0.93664 0.97818 1.11291 0.97241 0.90665 0.92759 0.97583 1.02173 0.92673 0.95149 0.91040 0.77332 0.93934 0.89381 0.83915 0.94270 0.87191 0.88914 0.90311 0.82527 0.81380 0.82831 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.16 127.69 1.17 2.85 16 2 N -0.54 -23.74 4.62 -927.03 -4.28 -28.02 16 3 C 0.21 11.23 4.72 85.56 0.40 11.63 16 4 C -0.52 -30.42 8.52 25.60 0.22 -30.20 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 0.05 5.46 84.65 0.46 0.51 16 7 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 8 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.02 0.80 4.62 86.30 0.40 1.20 16 13 C 0.13 3.53 3.02 30.59 0.09 3.62 16 14 H 0.09 2.44 6.47 -2.39 -0.02 2.43 16 15 O -0.55 -16.91 13.15 -148.98 -1.96 -18.87 16 16 C 0.04 0.77 5.32 86.30 0.46 1.23 16 17 N -0.69 -12.94 6.45 -513.90 -3.32 -16.25 16 18 C 0.06 0.80 6.10 86.30 0.53 1.33 16 19 C 0.06 0.68 5.08 71.98 0.37 1.05 16 20 O -0.33 -5.67 9.65 -92.33 -0.89 -6.56 16 21 C 0.15 2.55 6.69 22.50 0.15 2.70 16 22 C -0.22 -2.55 9.04 22.37 0.20 -2.35 16 23 C -0.05 -0.44 10.04 22.25 0.22 -0.21 16 24 C -0.20 -2.48 10.02 22.33 0.22 -2.26 16 25 C 0.12 2.09 7.30 22.36 0.16 2.26 16 26 F -0.15 -2.90 17.27 44.97 0.78 -2.13 16 27 C -0.21 -3.97 9.97 22.41 0.22 -3.74 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 2.58 6.30 -2.39 -0.02 2.56 16 30 H 0.05 2.37 6.86 -2.39 -0.02 2.36 16 31 H 0.01 0.35 7.93 -2.38 -0.02 0.33 16 32 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 34 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 36 H 0.38 9.52 9.04 -74.06 -0.67 8.85 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.34 7.13 8.29 -89.69 -0.74 6.39 16 40 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 0.63 7.65 -2.39 -0.02 0.61 16 43 H 0.08 0.90 7.67 -2.39 -0.02 0.88 16 44 H 0.16 1.07 6.30 -2.91 -0.02 1.05 16 45 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 46 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 47 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -70.97 391.32 -2.51 -73.47 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.43 Total: 18.07 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.28 Total: -10.41 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -7.31 Total: -100.64 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -2.85 Total: -25.43 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.97 -2.51 -73.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577602172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.232 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds