Wall clock time and date at job start Tue Mar 31 2020 14:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46930 * 299.99879 * 3 2 1 6 6 H 1.48500 * 109.47376 * 59.99700 * 3 2 1 7 7 C 1.37881 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.53118 * 109.52298 * 175.00016 * 10 9 7 12 12 C 1.53041 * 109.27988 * 177.55830 * 11 10 9 13 13 N 1.46850 * 109.52308 * 300.82015 * 12 11 10 14 14 C 1.46900 * 110.99856 * 185.83664 * 13 12 11 15 15 C 1.50703 * 109.46702 * 170.00258 * 14 13 12 16 16 C 1.35375 * 126.73346 * 95.00550 * 15 14 13 17 17 N 1.36114 * 106.05285 * 179.73603 * 16 15 14 18 18 C 1.40241 * 125.94350 * 179.97438 * 17 16 15 19 19 C 1.38818 * 120.06416 * 359.71696 * 18 17 16 20 20 C 1.38130 * 119.93350 * 179.72553 * 19 18 17 21 21 C 1.38271 * 120.06559 * 0.57745 * 20 19 18 22 22 C 1.38279 * 120.12993 * 359.69959 * 21 20 19 23 23 C 1.38124 * 120.06329 * 0.02562 * 22 21 20 24 24 N 1.28734 * 108.11411 * 359.97438 * 17 16 15 25 25 N 1.28605 * 110.23584 * 0.02562 * 24 17 16 26 26 C 1.46850 * 111.19612 * 61.74241 * 13 12 11 27 27 C 1.53034 * 109.52262 * 298.25640 * 26 13 12 28 28 H 0.97004 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46878 * 59.99708 * 9 7 2 30 30 H 1.08997 * 109.47230 * 300.00259 * 9 7 2 31 31 H 1.09003 * 109.52695 * 54.87158 * 10 9 7 32 32 H 1.09000 * 109.50362 * 57.61823 * 11 10 9 33 33 H 1.08990 * 109.53771 * 297.51970 * 11 10 9 34 34 H 1.08998 * 109.46520 * 180.80418 * 12 11 10 35 35 H 1.09003 * 109.45399 * 60.82910 * 12 11 10 36 36 H 1.08992 * 109.47028 * 50.00299 * 14 13 12 37 37 H 1.08999 * 109.47069 * 289.99900 * 14 13 12 38 38 H 1.07998 * 126.97014 * 359.73104 * 16 15 14 39 39 H 1.07999 * 120.03380 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.96701 * 180.31928 * 20 19 18 41 41 H 1.07995 * 119.93766 * 179.71954 * 21 20 19 42 42 H 1.08003 * 119.97242 * 180.02562 * 22 21 20 43 43 H 1.08006 * 120.03328 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.46261 * 58.27310 * 26 13 12 45 45 H 1.09001 * 109.46239 * 178.24407 * 26 13 12 46 46 H 1.08997 * 109.50560 * 299.23651 * 27 26 13 47 47 H 1.09008 * 109.53645 * 179.14137 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4848 -4.9852 0.1276 12 6 2.4791 -6.1471 0.0671 13 7 3.2105 -6.1013 -1.2055 14 6 4.0746 -7.2793 -1.3587 15 6 4.6162 -7.3256 -2.7643 16 6 5.8079 -6.8439 -3.1891 17 7 5.8690 -7.1128 -4.5220 18 6 6.9311 -6.7900 -5.3790 19 6 8.0484 -6.1312 -4.8843 20 6 9.0954 -5.8197 -5.7297 21 6 9.0263 -6.1528 -7.0699 22 6 7.9122 -6.8039 -7.5667 23 6 6.8646 -7.1231 -6.7250 24 7 4.7822 -7.7148 -4.8591 25 7 4.0162 -7.8562 -3.8358 26 6 3.9860 -4.8603 -1.3278 27 6 3.0368 -3.6600 -1.3089 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.9306 -3.5545 0.8425 32 1 0.7710 -5.0740 -0.6914 33 1 0.9527 -5.0108 1.0784 34 1 1.9395 -7.0911 0.1420 35 1 3.1841 -6.0650 0.8943 36 1 3.4963 -8.1820 -1.1622 37 1 4.9024 -7.2170 -0.6523 38 1 6.5579 -6.3471 -2.5915 39 1 8.1010 -5.8668 -3.8385 40 1 9.9672 -5.3118 -5.3442 41 1 9.8442 -5.9042 -7.7299 42 1 7.8611 -7.0633 -8.6139 43 1 5.9948 -7.6320 -7.1135 44 1 4.6840 -4.7845 -0.4939 45 1 4.5409 -4.8697 -2.2660 46 1 2.3475 -3.7279 -2.1505 47 1 3.6134 -2.7380 -1.3843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577629177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:13 Heat of formation + Delta-G solvation = 122.306450 kcal Electronic energy + Delta-G solvation = -26758.490844 eV Core-core repulsion = 23135.971481 eV Total energy + Delta-G solvation = -3622.519363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.61113 -39.72012 -38.71727 -35.29322 -34.43261 -32.61241 -31.84675 -31.08899 -30.29740 -30.20693 -28.25909 -25.87728 -24.60492 -23.73421 -23.05605 -22.58742 -21.69015 -20.94447 -20.46580 -18.88917 -18.66792 -16.80054 -16.74064 -16.22413 -15.73628 -15.50359 -15.41083 -14.90031 -14.49598 -14.46195 -14.37150 -14.00880 -13.54520 -13.41739 -13.29407 -12.89121 -12.50114 -12.34292 -12.06712 -12.00631 -11.83210 -11.62368 -11.46087 -11.21781 -11.10152 -10.94078 -10.77327 -10.61793 -10.56981 -10.24997 -9.92801 -9.60527 -9.53520 -9.44209 -9.03039 -8.96201 -8.83302 -8.30469 -8.07945 -5.95050 -3.96313 0.23378 0.74768 1.69334 1.99626 2.35265 3.21206 3.32346 3.39895 3.42995 3.95773 4.14987 4.20786 4.31148 4.48952 4.51742 4.62084 4.72029 4.77769 4.90214 5.00710 5.17089 5.28439 5.35739 5.39917 5.40810 5.46665 5.54887 5.67284 5.73052 5.76123 5.84752 5.89243 5.91219 5.98181 6.01005 6.14507 6.15920 6.27021 6.47431 6.56498 6.61836 6.70382 7.01516 7.13381 7.23608 7.32679 7.39496 7.74028 7.91271 8.06381 8.31474 8.49191 9.10527 9.66870 11.16381 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002706 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.195228 B =10344.211583 C =12035.103990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.062 3.938 13 N -0.530 5.530 14 C 0.138 3.862 15 C 0.007 3.993 16 C -0.046 4.046 17 N -0.247 5.247 18 C 0.127 3.873 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.115 4.115 22 C -0.100 4.100 23 C -0.103 4.103 24 N -0.082 5.082 25 N -0.239 5.239 26 C 0.055 3.945 27 C -0.099 4.099 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.190 0.810 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.753 -16.592 -10.072 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.099 4.099 11 C -0.150 4.150 12 C -0.065 4.065 13 N -0.256 5.256 14 C 0.009 3.991 15 C -0.130 4.130 16 C -0.194 4.194 17 N -0.034 5.034 18 C 0.036 3.964 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.123 4.123 24 N -0.059 5.059 25 N -0.106 5.106 26 C -0.072 4.072 27 C -0.136 4.136 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.207 0.793 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.397 -17.147 -11.549 27.674 hybrid contribution 1.696 1.633 1.429 2.754 sum 20.093 -15.513 -10.121 27.328 Atomic orbital electron populations 1.69979 1.06008 1.26304 1.51235 1.25026 0.94799 0.99120 0.95622 0.86607 0.80092 0.84194 0.77523 1.19843 1.21109 1.21113 1.21289 0.92901 0.91048 1.49866 0.92723 1.19120 0.93653 0.91048 0.97152 1.21229 0.97873 0.94847 0.95982 1.21695 0.97569 0.94121 1.01625 1.22109 0.96248 0.99772 0.88404 1.61855 1.27571 1.01072 1.35059 1.20255 0.95780 0.95675 0.87435 1.21851 0.92119 1.01640 0.97356 1.23523 1.02658 1.08492 0.84746 1.44623 1.13637 1.38029 1.07076 1.17707 0.86754 1.01952 0.89974 1.20963 0.92454 0.99350 1.01237 1.21061 0.98069 0.99123 0.93396 1.21370 0.98392 0.97899 0.95660 1.21139 0.92791 0.97781 1.00117 1.21039 1.00407 1.00094 0.90740 1.78357 0.91718 1.13959 1.21911 1.75084 1.22082 1.17628 0.95815 1.22240 0.95454 0.90111 0.99441 1.21531 0.97849 0.95296 0.98972 0.93166 0.96515 0.96722 0.93025 0.91500 0.91982 0.91285 0.95195 0.88884 0.93133 0.79270 0.84721 0.84524 0.84991 0.84557 0.83929 0.95336 0.92070 0.91957 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.39 8.45 -34.44 -0.29 -14.68 16 8 H 0.05 1.49 7.08 -52.48 -0.37 1.12 16 9 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 10 C -0.08 -1.66 2.20 -90.50 -0.20 -1.86 16 11 C -0.11 -1.97 5.38 -26.65 -0.14 -2.12 16 12 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 13 N -0.53 -7.93 4.65 -236.11 -1.10 -9.03 16 14 C 0.14 1.69 5.53 -4.97 -0.03 1.66 16 15 C 0.01 0.10 5.97 -82.76 -0.49 -0.40 16 16 C -0.05 -0.52 9.70 -16.67 -0.16 -0.68 16 17 N -0.25 -3.03 3.56 -10.48 -0.04 -3.06 16 18 C 0.13 1.26 6.68 -83.58 -0.56 0.70 16 19 C -0.12 -0.89 9.46 -39.41 -0.37 -1.26 16 20 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 21 C -0.11 -0.61 10.04 -39.55 -0.40 -1.01 16 22 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 23 C -0.10 -0.90 9.62 -39.41 -0.38 -1.28 16 24 N -0.08 -1.21 12.42 60.35 0.75 -0.46 16 25 N -0.24 -3.79 12.39 33.29 0.41 -3.38 16 26 C 0.06 0.86 5.29 -3.83 -0.02 0.83 16 27 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 1.07 7.99 -51.93 -0.41 0.66 16 37 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.19 1.46 7.11 -52.49 -0.37 1.08 16 39 H 0.13 0.78 6.77 -52.49 -0.36 0.43 16 40 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.14 1.27 7.69 -52.48 -0.40 0.87 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.91 6.24 -51.93 -0.32 0.59 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.07 1.46 7.05 -51.92 -0.37 1.09 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -33.76 379.76 -9.99 -43.75 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -7.23 Total: -2.64 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -4.22 Total: -21.16 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.76 Total: -42.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.76 -9.99 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577629177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.057 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds