Wall clock time and date at job start Tue Mar 31 2020 14:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46930 * 299.99879 * 3 2 1 6 6 H 1.48500 * 109.47376 * 59.99700 * 3 2 1 7 7 C 1.37881 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47181 * 180.02562 * 9 7 2 11 11 C 1.53118 * 109.52298 * 175.00016 * 10 9 7 12 12 C 1.53041 * 109.27988 * 177.55830 * 11 10 9 13 13 N 1.46850 * 109.52308 * 300.82015 * 12 11 10 14 14 C 1.46900 * 110.99856 * 185.83664 * 13 12 11 15 15 C 1.50703 * 109.46702 * 170.00258 * 14 13 12 16 16 C 1.35375 * 126.73346 * 95.00550 * 15 14 13 17 17 N 1.36114 * 106.05285 * 179.73603 * 16 15 14 18 18 C 1.40241 * 125.94350 * 179.97438 * 17 16 15 19 19 C 1.38818 * 120.06416 * 359.71696 * 18 17 16 20 20 C 1.38130 * 119.93350 * 179.72553 * 19 18 17 21 21 C 1.38271 * 120.06559 * 0.57745 * 20 19 18 22 22 C 1.38279 * 120.12993 * 359.69959 * 21 20 19 23 23 C 1.38124 * 120.06329 * 0.02562 * 22 21 20 24 24 N 1.28734 * 108.11411 * 359.97438 * 17 16 15 25 25 N 1.28605 * 110.23584 * 0.02562 * 24 17 16 26 26 C 1.46850 * 111.19612 * 61.74241 * 13 12 11 27 27 C 1.53034 * 109.52262 * 298.25640 * 26 13 12 28 28 H 0.97004 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46878 * 59.99708 * 9 7 2 30 30 H 1.08997 * 109.47230 * 300.00259 * 9 7 2 31 31 H 1.09003 * 109.52695 * 54.87158 * 10 9 7 32 32 H 1.09000 * 109.50362 * 57.61823 * 11 10 9 33 33 H 1.08990 * 109.53771 * 297.51970 * 11 10 9 34 34 H 1.08998 * 109.46520 * 180.80418 * 12 11 10 35 35 H 1.09003 * 109.45399 * 60.82910 * 12 11 10 36 36 H 1.08992 * 109.47028 * 50.00299 * 14 13 12 37 37 H 1.08999 * 109.47069 * 289.99900 * 14 13 12 38 38 H 1.07998 * 126.97014 * 359.73104 * 16 15 14 39 39 H 1.07999 * 120.03380 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.96701 * 180.31928 * 20 19 18 41 41 H 1.07995 * 119.93766 * 179.71954 * 21 20 19 42 42 H 1.08003 * 119.97242 * 180.02562 * 22 21 20 43 43 H 1.08006 * 120.03328 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.46261 * 58.27310 * 26 13 12 45 45 H 1.09001 * 109.46239 * 178.24407 * 26 13 12 46 46 H 1.08997 * 109.50560 * 299.23651 * 27 26 13 47 47 H 1.09008 * 109.53645 * 179.14137 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4848 -4.9852 0.1276 12 6 2.4791 -6.1471 0.0671 13 7 3.2105 -6.1013 -1.2055 14 6 4.0746 -7.2793 -1.3587 15 6 4.6162 -7.3256 -2.7643 16 6 5.8079 -6.8439 -3.1891 17 7 5.8690 -7.1128 -4.5220 18 6 6.9311 -6.7900 -5.3790 19 6 8.0484 -6.1312 -4.8843 20 6 9.0954 -5.8197 -5.7297 21 6 9.0263 -6.1528 -7.0699 22 6 7.9122 -6.8039 -7.5667 23 6 6.8646 -7.1231 -6.7250 24 7 4.7822 -7.7148 -4.8591 25 7 4.0162 -7.8562 -3.8358 26 6 3.9860 -4.8603 -1.3278 27 6 3.0368 -3.6600 -1.3089 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.9306 -3.5545 0.8425 32 1 0.7710 -5.0740 -0.6914 33 1 0.9527 -5.0108 1.0784 34 1 1.9395 -7.0911 0.1420 35 1 3.1841 -6.0650 0.8943 36 1 3.4963 -8.1820 -1.1622 37 1 4.9024 -7.2170 -0.6523 38 1 6.5579 -6.3471 -2.5915 39 1 8.1010 -5.8668 -3.8385 40 1 9.9672 -5.3118 -5.3442 41 1 9.8442 -5.9042 -7.7299 42 1 7.8611 -7.0633 -8.6139 43 1 5.9948 -7.6320 -7.1135 44 1 4.6840 -4.7845 -0.4939 45 1 4.5409 -4.8697 -2.2660 46 1 2.3475 -3.7279 -2.1505 47 1 3.6134 -2.7380 -1.3843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577629177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:12 Heat of formation + Delta-G solvation = 101.759196 kcal Electronic energy + Delta-G solvation = -26759.381840 eV Core-core repulsion = 23135.971481 eV Total energy + Delta-G solvation = -3623.410359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.51641 -40.31193 -39.97539 -36.55593 -35.56218 -34.40785 -32.79073 -31.96968 -31.58493 -30.88796 -29.86364 -27.28797 -25.36607 -25.24521 -24.09360 -23.74175 -22.45800 -22.32182 -21.47935 -20.41680 -19.39927 -18.42931 -17.73093 -17.26238 -16.78301 -16.45970 -16.37375 -16.12506 -15.82585 -15.47854 -15.11914 -15.09339 -14.75757 -14.50196 -14.29945 -14.17516 -13.99974 -13.53212 -13.38404 -13.21696 -12.93509 -12.78065 -12.66258 -12.61358 -12.36232 -12.19488 -12.12610 -12.01919 -11.95880 -11.81555 -11.63610 -11.25070 -10.89006 -10.70189 -10.53165 -10.37365 -10.09905 -9.62100 -9.16276 -8.16894 -6.26681 -0.42306 0.25783 0.95639 1.24648 1.36625 1.39083 1.39616 1.52454 2.41808 2.69144 3.06029 3.16227 3.23070 3.51551 3.75219 3.86606 3.95171 4.03876 4.08957 4.12141 4.15770 4.19989 4.34125 4.38166 4.41059 4.53125 4.57266 4.66633 4.67569 4.76203 4.81935 4.88652 4.95128 4.96885 5.00831 5.11031 5.17079 5.28766 5.31187 5.40021 5.43050 5.43791 5.45259 5.57608 5.58677 5.82057 5.90304 5.91625 6.19352 6.22605 6.30988 6.90168 7.36699 7.41707 8.95475 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.002706 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.195228 B =10344.211583 C =12035.103990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.032 3.968 10 C -0.072 4.072 11 C -0.109 4.109 12 C 0.071 3.929 13 N -0.552 5.552 14 C 0.144 3.856 15 C -0.011 4.011 16 C -0.035 4.035 17 N -0.240 5.240 18 C 0.088 3.912 19 C -0.120 4.120 20 C -0.097 4.097 21 C -0.106 4.106 22 C -0.103 4.103 23 C -0.122 4.122 24 N -0.116 5.116 25 N -0.281 5.281 26 C 0.069 3.931 27 C -0.093 4.093 28 H 0.261 0.739 29 H -0.020 1.020 30 H -0.013 1.013 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.050 0.950 45 H 0.068 0.932 46 H 0.033 0.967 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.989 -16.415 -9.722 30.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.147 4.147 12 C -0.056 4.056 13 N -0.278 5.278 14 C 0.015 3.985 15 C -0.149 4.149 16 C -0.185 4.185 17 N -0.027 5.027 18 C -0.002 4.002 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.142 4.142 24 N -0.093 5.093 25 N -0.147 5.147 26 C -0.059 4.059 27 C -0.131 4.131 28 H 0.070 0.930 29 H -0.001 1.001 30 H 0.006 0.994 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.245 0.755 39 H 0.170 0.830 40 H 0.184 0.816 41 H 0.181 0.819 42 H 0.175 0.825 43 H 0.145 0.855 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.052 0.948 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.647 -16.999 -11.225 30.461 hybrid contribution 0.433 1.603 1.223 2.062 sum 23.080 -15.396 -10.003 29.492 Atomic orbital electron populations 1.70129 1.07919 1.27450 1.52383 1.26012 0.95711 1.03406 0.95169 0.85440 0.79316 0.78993 0.77573 1.18155 1.20820 1.20468 1.21690 0.93455 0.91988 1.49270 0.91869 1.19023 0.94097 0.93356 0.94021 1.21074 0.96908 0.94165 0.96946 1.21615 0.97928 0.94135 1.01016 1.22011 0.95877 0.98788 0.88938 1.61726 1.28772 1.01771 1.35542 1.20312 0.96443 0.94323 0.87440 1.22166 0.92965 1.02340 0.97454 1.24089 1.02633 1.07216 0.84513 1.44853 1.13341 1.36700 1.07839 1.18134 0.87298 1.04446 0.90304 1.21271 0.91822 0.98509 1.02496 1.21491 0.98314 0.98392 0.93365 1.21809 0.98465 0.96058 0.96144 1.21438 0.92348 0.97439 1.00867 1.21135 1.00997 1.00915 0.91149 1.78281 0.92989 1.15862 1.22177 1.75015 1.23493 1.19294 0.96924 1.22022 0.94487 0.88634 1.00716 1.21398 0.97778 0.97016 0.96954 0.93019 1.00143 0.99443 0.92394 0.93649 0.91547 0.89246 0.93247 0.88382 0.89899 0.75538 0.82989 0.81562 0.81942 0.82509 0.85502 0.93142 0.91388 0.94836 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.53 -30.10 8.45 25.60 0.22 -29.89 16 8 H 0.06 3.43 7.08 -2.91 -0.02 3.41 16 9 C 0.03 1.74 4.45 29.84 0.13 1.87 16 10 C -0.07 -3.01 2.20 -10.72 -0.02 -3.03 16 11 C -0.11 -3.84 5.38 30.65 0.16 -3.68 16 12 C 0.07 1.90 5.46 86.33 0.47 2.37 16 13 N -0.55 -15.51 4.65 -900.91 -4.19 -19.70 16 14 C 0.14 3.15 5.53 85.56 0.47 3.62 16 15 C -0.01 -0.28 5.97 41.60 0.25 -0.03 16 16 C -0.04 -0.73 9.70 83.37 0.81 0.07 16 17 N -0.24 -5.83 3.56 -187.06 -0.67 -6.49 16 18 C 0.09 1.69 6.68 38.07 0.25 1.94 16 19 C -0.12 -1.49 9.46 22.38 0.21 -1.28 16 20 C -0.10 -0.77 10.04 22.25 0.22 -0.54 16 21 C -0.11 -0.79 10.04 22.29 0.22 -0.56 16 22 C -0.10 -1.11 10.04 22.25 0.22 -0.88 16 23 C -0.12 -2.14 9.62 22.38 0.22 -1.92 16 24 N -0.12 -3.57 12.42 37.02 0.46 -3.11 16 25 N -0.28 -9.12 12.39 -48.58 -0.60 -9.72 16 26 C 0.07 2.01 5.29 86.32 0.46 2.46 16 27 C -0.09 -3.63 5.15 30.65 0.16 -3.47 16 28 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 29 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.06 8.02 -2.39 -0.02 2.04 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 2.04 7.99 -2.39 -0.02 2.03 16 37 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 38 H 0.23 2.61 7.11 -2.91 -0.02 2.59 16 39 H 0.15 1.22 6.77 -2.91 -0.02 1.20 16 40 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 41 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.13 2.50 7.69 -2.91 -0.02 2.48 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.89 6.24 -2.39 -0.01 1.88 16 46 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 2.35 7.05 -2.38 -0.02 2.33 16 Total: -1.00 -78.10 379.76 3.19 -74.91 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.95 Total: 8.56 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 4.92 Total: -32.86 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.71 Total: -97.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -78.10 3.19 -74.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577629177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.671 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds