Wall clock time and date at job start Tue Mar 31 2020 15:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 C 1.52993 * 109.47257 * 120.00114 * 2 1 3 5 5 H 1.08992 * 109.47465 * 306.00722 * 4 2 1 6 6 N 1.46903 * 109.46985 * 186.00510 * 4 2 1 7 7 C 1.46899 * 110.99848 * 159.16956 * 6 4 2 8 8 C 1.53003 * 109.47205 * 175.21428 * 7 6 4 9 9 H 1.09000 * 109.46873 * 54.99914 * 8 7 6 10 10 C 1.47202 * 109.46939 * 295.00144 * 8 7 6 11 11 N 5.79566 * 147.51370 * 154.77270 * 2 1 3 12 12 C 1.52993 * 109.47517 * 174.99847 * 8 7 6 13 13 C 1.50693 * 109.47384 * 184.99945 * 12 8 7 14 14 H 1.08001 * 120.00171 * 0.02562 * 13 12 8 15 15 C 1.37878 * 120.00073 * 179.97438 * 13 12 8 16 16 N 1.31516 * 120.00131 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00221 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47029 * 89.99614 * 17 15 13 19 19 H 1.48498 * 109.47442 * 210.00214 * 17 15 13 20 20 H 1.48502 * 109.46951 * 330.00578 * 17 15 13 21 21 C 1.50700 * 109.47024 * 66.00779 * 4 2 1 22 22 N 1.30112 * 124.95235 * 304.69321 * 21 4 2 23 23 C 1.35787 * 109.64579 * 179.86985 * 22 21 4 24 24 C 1.39735 * 133.60122 * 180.11331 * 23 22 21 25 25 C 1.36604 * 119.88653 * 180.30047 * 24 23 22 26 26 C 1.38773 * 120.66545 * 359.97438 * 25 24 23 27 27 C 1.37846 * 120.45586 * 0.05891 * 26 25 24 28 28 C 1.38833 * 119.68734 * 359.92346 * 27 26 25 29 29 N 1.36040 * 124.94880 * 124.99952 * 21 4 2 30 30 H 0.96993 * 126.35659 * 359.93867 * 29 21 4 31 31 H 1.09001 * 109.46994 * 299.99496 * 1 2 3 32 32 H 1.08998 * 109.47386 * 59.99219 * 1 2 3 33 33 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46528 * 240.00329 * 2 1 3 35 35 H 1.09000 * 109.46879 * 175.07830 * 3 2 1 36 36 H 1.08997 * 109.47278 * 295.08032 * 3 2 1 37 37 H 1.09002 * 109.47326 * 55.08331 * 3 2 1 38 38 H 1.00898 * 111.00081 * 283.12181 * 6 4 2 39 39 H 1.09000 * 109.47423 * 55.21587 * 7 6 4 40 40 H 1.08995 * 109.47029 * 295.21229 * 7 6 4 41 41 H 1.09003 * 109.46946 * 305.00622 * 12 8 7 42 42 H 1.09003 * 109.46951 * 65.00091 * 12 8 7 43 43 H 0.96999 * 119.99794 * 180.02562 * 16 15 13 44 44 H 1.08011 * 120.05401 * 0.32043 * 24 23 22 45 45 H 1.08003 * 119.66032 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.76690 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.15450 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5916 -0.2734 2.1359 6 7 3.5019 -0.5970 1.3237 7 6 3.9799 -0.8202 2.6947 8 6 5.5098 -0.8012 2.7109 9 1 5.8662 0.1310 2.2727 10 6 6.0228 -1.9384 1.9296 11 7 6.4188 -2.8159 1.3267 12 6 6.0060 -0.9087 4.1542 13 6 7.5059 -0.7668 4.1816 14 1 8.0509 -0.6147 3.2616 15 6 8.1826 -0.8301 5.3812 16 7 7.5190 -1.0149 6.5016 17 14 10.0419 -0.6535 5.4153 18 1 10.4003 0.7789 5.5732 19 1 10.5922 -1.4300 6.5553 20 1 10.6115 -1.1689 4.1444 21 6 1.6628 -2.1785 1.1770 22 7 0.4526 -2.6280 1.0149 23 6 0.4692 -3.9856 0.9918 24 6 -0.5225 -4.9591 0.8458 25 6 -0.1859 -6.2828 0.8709 26 6 1.1347 -6.6742 1.0399 27 6 2.1295 -5.7314 1.1866 28 6 1.8064 -4.3814 1.1633 29 7 2.5373 -3.2157 1.2778 30 1 3.4964 -3.1488 1.4056 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1264 1.4438 0.0882 36 1 1.7504 1.9303 -0.9307 37 1 1.6065 1.9812 0.8427 38 1 3.9519 -1.2272 0.6769 39 1 3.6248 -1.7874 3.0505 40 1 3.5999 -0.0321 3.3448 41 1 5.5550 -0.1176 4.7533 42 1 5.7253 -1.8792 4.5635 43 1 7.9951 -1.0591 7.3456 44 1 -1.5534 -4.6654 0.7129 45 1 -0.9555 -7.0322 0.7580 46 1 1.3845 -7.7248 1.0571 47 1 3.1557 -6.0415 1.3182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577741207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:43 Heat of formation + Delta-G solvation = 80.608796 kcal Electronic energy + Delta-G solvation = -27388.373698 eV Core-core repulsion = 23764.046189 eV Total energy + Delta-G solvation = -3624.327509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39246 -38.67208 -37.21878 -36.39876 -34.60067 -33.59561 -32.95144 -31.49099 -30.04260 -29.60071 -27.28505 -26.93671 -25.28622 -23.09371 -22.64599 -22.14060 -21.93242 -21.26816 -20.01724 -18.27779 -17.32198 -16.93069 -16.68004 -16.11437 -15.57814 -15.36689 -15.07417 -14.59192 -14.44391 -14.22936 -14.05884 -13.80778 -13.40686 -13.22806 -12.94924 -12.59725 -12.41577 -12.23978 -12.17978 -12.06070 -12.02271 -11.87598 -11.72475 -11.51028 -11.19962 -11.11467 -10.96436 -10.88881 -10.83466 -10.69356 -10.56576 -10.44463 -9.87454 -9.70277 -9.35502 -8.88837 -8.54884 -8.49478 -8.24077 -6.18997 -4.23197 0.81000 1.38575 2.61879 2.66371 3.22007 3.25313 3.30300 3.32026 3.34887 3.73508 3.76923 3.97185 4.33057 4.39448 4.51506 4.72680 4.83936 4.90517 4.96483 5.15467 5.19180 5.22471 5.25502 5.30352 5.34846 5.39352 5.42161 5.56221 5.65143 5.74312 5.90808 5.92268 5.96842 6.02312 6.11272 6.16644 6.27406 6.32347 6.34595 6.36386 6.42008 6.60294 6.63949 6.77183 6.96297 7.14522 7.30011 7.36992 7.73995 7.74731 8.09622 8.10923 8.81021 9.43157 10.91661 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012040 B = 0.003324 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.004357 B = 8422.335996 C =10036.229018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.071 4.071 3 C -0.139 4.139 4 C 0.168 3.832 5 H 0.116 0.884 6 N -0.677 5.677 7 C 0.056 3.944 8 C 0.004 3.996 9 H 0.117 0.883 10 C 0.233 3.767 11 N -0.470 5.470 12 C 0.033 3.967 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.261 3.739 22 N -0.480 5.480 23 C 0.047 3.953 24 C -0.067 4.067 25 C -0.129 4.129 26 C -0.105 4.105 27 C -0.108 4.108 28 C 0.047 3.953 29 N -0.599 5.599 30 H 0.420 0.580 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.337 0.663 39 H 0.033 0.967 40 H 0.105 0.895 41 H 0.042 0.958 42 H 0.024 0.976 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 -2.343 -11.180 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.091 4.091 3 C -0.196 4.196 4 C 0.055 3.945 5 H 0.134 0.866 6 N -0.306 5.306 7 C -0.073 4.073 8 C -0.018 4.018 9 H 0.135 0.865 10 C -0.084 4.084 11 N -0.147 5.147 12 C -0.005 4.005 13 C -0.568 4.568 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.008 4.008 22 N -0.200 5.200 23 C -0.071 4.071 24 C -0.086 4.086 25 C -0.149 4.149 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.063 4.063 29 N -0.210 5.210 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.156 0.844 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.622 -2.531 -11.912 20.606 hybrid contribution 2.270 -1.153 0.722 2.647 sum -14.352 -3.684 -11.190 18.568 Atomic orbital electron populations 1.22069 0.94037 1.04475 1.01097 1.20961 0.96346 0.96614 0.95210 1.21743 1.02889 0.94013 1.00971 1.20564 0.88462 0.83528 1.01942 0.86623 1.60767 1.03488 1.58312 1.08080 1.22358 0.94478 1.01402 0.89085 1.19418 0.92005 0.91709 0.98682 0.86482 1.29481 0.92675 0.94225 0.91991 1.81096 1.09047 1.12094 1.12454 1.19165 0.96743 0.98823 0.85784 1.21100 0.91540 1.50893 0.93261 0.92464 1.24952 0.98583 0.94750 0.95598 1.69932 1.35840 1.48985 0.98028 0.86581 0.85378 0.78294 0.77783 1.20331 1.21114 1.19891 1.24864 0.85027 0.93245 0.97640 1.70356 1.19463 1.07875 1.22343 1.19174 0.91915 0.90833 1.05211 1.19992 0.98001 0.90878 0.99769 1.20639 0.96465 0.95401 1.02418 1.20869 0.92399 0.98920 1.00277 1.20064 1.00278 0.88782 1.03774 1.18936 0.92727 0.88418 1.06180 1.43224 1.10959 1.05214 1.61645 0.73998 0.92829 0.93169 0.89426 0.91617 0.90620 0.93289 0.92775 0.84362 0.94830 0.87722 0.93951 0.95815 0.92681 0.85404 0.85428 0.85302 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.93 37.16 0.33 -1.26 16 2 C -0.07 -0.72 2.66 -90.62 -0.24 -0.96 16 3 C -0.14 -1.29 9.06 37.16 0.34 -0.95 16 4 C 0.17 1.86 2.10 -68.87 -0.14 1.71 16 5 H 0.12 1.23 7.92 -51.93 -0.41 0.82 16 6 N -0.68 -7.78 4.99 -107.96 -0.54 -8.32 16 7 C 0.06 0.74 4.50 -3.82 -0.02 0.72 16 8 C 0.00 0.06 2.42 -93.41 -0.23 -0.16 16 9 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 10 C 0.23 4.24 12.69 -20.76 -0.26 3.97 16 11 N -0.47 -9.22 18.54 42.15 0.78 -8.44 16 12 C 0.03 0.73 4.42 -27.89 -0.12 0.61 16 13 C -0.53 -13.52 8.60 -34.44 -0.30 -13.81 16 14 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -24.81 13.29 55.43 0.74 -24.08 16 17 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.26 3.44 6.72 -154.82 -1.04 2.40 16 22 N -0.48 -6.75 8.60 -8.24 -0.07 -6.82 16 23 C 0.05 0.66 7.23 -84.70 -0.61 0.05 16 24 C -0.07 -0.77 10.05 -39.61 -0.40 -1.17 16 25 C -0.13 -1.26 9.96 -39.97 -0.40 -1.66 16 26 C -0.10 -1.08 10.03 -39.53 -0.40 -1.47 16 27 C -0.11 -1.34 10.07 -39.50 -0.40 -1.74 16 28 C 0.05 0.67 7.31 -83.99 -0.61 0.05 16 29 N -0.60 -8.24 5.34 -8.00 -0.04 -8.29 16 30 H 0.42 5.80 6.80 -40.82 -0.28 5.53 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.03 5.53 -51.93 -0.29 0.74 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.76 7.28 -51.93 -0.38 0.38 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.34 4.12 6.59 -39.29 -0.26 3.87 16 39 H 0.03 0.47 6.74 -51.93 -0.35 0.12 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -29.31 386.08 -9.93 -39.24 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.99 Total: 7.19 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -4.60 Total: -12.05 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.87 Total: -55.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.31 -9.93 -39.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577741207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.848 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds