Wall clock time and date at job start Tue Mar 31 2020 15:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 C 1.52993 * 109.47257 * 120.00114 * 2 1 3 5 5 H 1.08992 * 109.47465 * 306.00722 * 4 2 1 6 6 N 1.46903 * 109.46985 * 186.00510 * 4 2 1 7 7 C 1.46899 * 110.99848 * 159.16956 * 6 4 2 8 8 C 1.53003 * 109.47205 * 175.21428 * 7 6 4 9 9 H 1.09000 * 109.46873 * 54.99914 * 8 7 6 10 10 C 1.47202 * 109.46939 * 295.00144 * 8 7 6 11 11 N 5.79566 * 147.51370 * 154.77270 * 2 1 3 12 12 C 1.52993 * 109.47517 * 174.99847 * 8 7 6 13 13 C 1.50693 * 109.47384 * 184.99945 * 12 8 7 14 14 H 1.08001 * 120.00171 * 0.02562 * 13 12 8 15 15 C 1.37878 * 120.00073 * 179.97438 * 13 12 8 16 16 N 1.31516 * 120.00131 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00221 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47029 * 89.99614 * 17 15 13 19 19 H 1.48498 * 109.47442 * 210.00214 * 17 15 13 20 20 H 1.48502 * 109.46951 * 330.00578 * 17 15 13 21 21 C 1.50700 * 109.47024 * 66.00779 * 4 2 1 22 22 N 1.30112 * 124.95235 * 304.69321 * 21 4 2 23 23 C 1.35787 * 109.64579 * 179.86985 * 22 21 4 24 24 C 1.39735 * 133.60122 * 180.11331 * 23 22 21 25 25 C 1.36604 * 119.88653 * 180.30047 * 24 23 22 26 26 C 1.38773 * 120.66545 * 359.97438 * 25 24 23 27 27 C 1.37846 * 120.45586 * 0.05891 * 26 25 24 28 28 C 1.38833 * 119.68734 * 359.92346 * 27 26 25 29 29 N 1.36040 * 124.94880 * 124.99952 * 21 4 2 30 30 H 0.96993 * 126.35659 * 359.93867 * 29 21 4 31 31 H 1.09001 * 109.46994 * 299.99496 * 1 2 3 32 32 H 1.08998 * 109.47386 * 59.99219 * 1 2 3 33 33 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46528 * 240.00329 * 2 1 3 35 35 H 1.09000 * 109.46879 * 175.07830 * 3 2 1 36 36 H 1.08997 * 109.47278 * 295.08032 * 3 2 1 37 37 H 1.09002 * 109.47326 * 55.08331 * 3 2 1 38 38 H 1.00898 * 111.00081 * 283.12181 * 6 4 2 39 39 H 1.09000 * 109.47423 * 55.21587 * 7 6 4 40 40 H 1.08995 * 109.47029 * 295.21229 * 7 6 4 41 41 H 1.09003 * 109.46946 * 305.00622 * 12 8 7 42 42 H 1.09003 * 109.46951 * 65.00091 * 12 8 7 43 43 H 0.96999 * 119.99794 * 180.02562 * 16 15 13 44 44 H 1.08011 * 120.05401 * 0.32043 * 24 23 22 45 45 H 1.08003 * 119.66032 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.76690 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.15450 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5916 -0.2734 2.1359 6 7 3.5019 -0.5970 1.3237 7 6 3.9799 -0.8202 2.6947 8 6 5.5098 -0.8012 2.7109 9 1 5.8662 0.1310 2.2727 10 6 6.0228 -1.9384 1.9296 11 7 6.4188 -2.8159 1.3267 12 6 6.0060 -0.9087 4.1542 13 6 7.5059 -0.7668 4.1816 14 1 8.0509 -0.6147 3.2616 15 6 8.1826 -0.8301 5.3812 16 7 7.5190 -1.0149 6.5016 17 14 10.0419 -0.6535 5.4153 18 1 10.4003 0.7789 5.5732 19 1 10.5922 -1.4300 6.5553 20 1 10.6115 -1.1689 4.1444 21 6 1.6628 -2.1785 1.1770 22 7 0.4526 -2.6280 1.0149 23 6 0.4692 -3.9856 0.9918 24 6 -0.5225 -4.9591 0.8458 25 6 -0.1859 -6.2828 0.8709 26 6 1.1347 -6.6742 1.0399 27 6 2.1295 -5.7314 1.1866 28 6 1.8064 -4.3814 1.1633 29 7 2.5373 -3.2157 1.2778 30 1 3.4964 -3.1488 1.4056 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1264 1.4438 0.0882 36 1 1.7504 1.9303 -0.9307 37 1 1.6065 1.9812 0.8427 38 1 3.9519 -1.2272 0.6769 39 1 3.6248 -1.7874 3.0505 40 1 3.5999 -0.0321 3.3448 41 1 5.5550 -0.1176 4.7533 42 1 5.7253 -1.8792 4.5635 43 1 7.9951 -1.0591 7.3456 44 1 -1.5534 -4.6654 0.7129 45 1 -0.9555 -7.0322 0.7580 46 1 1.3845 -7.7248 1.0571 47 1 3.1557 -6.0415 1.3182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577741207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:42 Heat of formation + Delta-G solvation = 65.602030 kcal Electronic energy + Delta-G solvation = -27389.024440 eV Core-core repulsion = 23764.046189 eV Total energy + Delta-G solvation = -3624.978251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.34784 -39.69574 -38.40160 -37.43423 -35.94691 -35.09866 -34.10578 -32.93161 -30.94100 -30.58981 -28.73258 -27.71135 -26.57380 -24.32075 -23.70718 -23.56410 -22.97560 -22.20988 -20.91131 -19.24340 -18.58693 -18.34989 -18.15199 -17.11721 -16.71528 -16.50606 -16.31953 -15.97432 -15.36157 -15.14581 -15.05556 -14.92941 -14.67100 -14.50266 -14.42065 -14.01274 -13.58505 -13.50087 -13.24187 -13.15640 -12.96540 -12.84254 -12.79276 -12.74972 -12.60394 -12.54189 -12.43745 -12.12500 -11.92536 -11.85602 -11.70439 -11.53521 -11.42528 -11.16270 -10.82964 -10.57574 -9.88631 -9.42090 -9.16628 -8.22311 -6.30659 -0.09411 0.48501 1.38697 1.40915 1.49157 1.65783 1.67535 1.78228 1.82529 2.38729 2.76746 2.84597 3.01050 3.09406 3.15396 3.45674 3.84453 3.96018 4.03876 4.08320 4.11765 4.21388 4.32927 4.36842 4.44755 4.48230 4.54076 4.65539 4.75272 4.81320 4.85548 4.89437 5.01695 5.05970 5.21319 5.27428 5.32149 5.43440 5.43974 5.47464 5.51361 5.55493 5.63144 5.67506 5.76014 5.78643 5.88853 5.95157 6.15549 6.15973 6.60309 6.75537 6.83603 7.38482 8.88398 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012040 B = 0.003324 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.004357 B = 8422.335996 C =10036.229018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.065 4.065 3 C -0.133 4.133 4 C 0.172 3.828 5 H 0.124 0.876 6 N -0.664 5.664 7 C 0.068 3.932 8 C 0.017 3.983 9 H 0.134 0.866 10 C 0.242 3.758 11 N -0.495 5.495 12 C 0.039 3.961 13 C -0.539 4.539 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.254 3.746 22 N -0.491 5.491 23 C 0.019 3.981 24 C -0.077 4.077 25 C -0.120 4.120 26 C -0.097 4.097 27 C -0.131 4.131 28 C 0.021 3.979 29 N -0.604 5.604 30 H 0.416 0.584 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.334 0.666 39 H 0.025 0.975 40 H 0.122 0.878 41 H 0.039 0.961 42 H -0.002 1.002 43 H 0.264 0.736 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.333 -2.236 -11.994 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.085 4.085 3 C -0.191 4.191 4 C 0.060 3.940 5 H 0.142 0.858 6 N -0.293 5.293 7 C -0.062 4.062 8 C -0.004 4.004 9 H 0.152 0.848 10 C -0.074 4.074 11 N -0.172 5.172 12 C 0.000 4.000 13 C -0.577 4.577 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.015 4.015 22 N -0.212 5.212 23 C -0.099 4.099 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.116 4.116 27 C -0.152 4.152 28 C -0.088 4.088 29 N -0.216 5.216 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.043 0.957 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.073 0.927 44 H 0.161 0.839 45 H 0.181 0.819 46 H 0.177 0.823 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.496 -2.419 -12.741 21.779 hybrid contribution 2.480 -1.278 0.945 2.946 sum -15.016 -3.697 -11.796 19.450 Atomic orbital electron populations 1.21998 0.93743 1.03520 1.01877 1.20919 0.96459 0.96989 0.94147 1.21698 1.02368 0.93241 1.01772 1.20673 0.87858 0.82659 1.02856 0.85813 1.60773 1.03878 1.57817 1.06873 1.22209 0.91917 1.01687 0.90362 1.19283 0.94172 0.91721 0.95260 0.84805 1.29772 0.91975 0.94075 0.91611 1.81095 1.09983 1.12822 1.13299 1.18974 0.94983 0.97135 0.88870 1.21529 0.93562 1.49595 0.92988 0.92601 1.25695 1.02438 0.94948 0.95592 1.70029 1.37250 1.50491 0.98464 0.85711 0.80914 0.78673 0.77376 1.19152 1.21210 1.20059 1.25212 0.84912 0.93812 0.97607 1.70347 1.19840 1.08166 1.22805 1.19626 0.92648 0.91265 1.06353 1.20346 0.98359 0.91279 0.99705 1.21073 0.97134 0.95442 1.00383 1.21305 0.92161 0.99995 0.98144 1.20319 1.01115 0.88699 1.05058 1.19319 0.93127 0.89140 1.07262 1.43261 1.10759 1.05532 1.62079 0.74445 0.92256 0.92147 0.91189 0.92598 0.91295 0.92393 0.92114 0.84728 0.95706 0.85996 0.94238 0.98395 0.92732 0.83893 0.81850 0.82314 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.93 71.98 0.64 -2.26 16 2 C -0.07 -1.25 2.66 -10.79 -0.03 -1.28 16 3 C -0.13 -2.22 9.06 71.98 0.65 -1.57 16 4 C 0.17 3.69 2.10 44.17 0.09 3.78 16 5 H 0.12 2.48 7.92 -2.39 -0.02 2.46 16 6 N -0.66 -14.68 4.99 -495.46 -2.47 -17.15 16 7 C 0.07 1.73 4.50 86.30 0.39 2.12 16 8 C 0.02 0.56 2.42 -12.60 -0.03 0.53 16 9 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 10 C 0.24 8.76 12.69 89.44 1.13 9.90 16 11 N -0.49 -19.48 18.54 20.01 0.37 -19.11 16 12 C 0.04 1.71 4.42 29.84 0.13 1.84 16 13 C -0.54 -27.42 8.60 25.60 0.22 -27.20 16 14 H 0.06 2.80 7.59 -2.91 -0.02 2.78 16 15 C 0.01 0.66 5.46 84.65 0.46 1.13 16 16 N -0.92 -51.92 13.29 21.45 0.28 -51.63 16 17 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.25 6.72 6.72 137.92 0.93 7.65 16 22 N -0.49 -13.91 8.60 -179.97 -1.55 -15.45 16 23 C 0.02 0.53 7.23 39.44 0.29 0.82 16 24 C -0.08 -1.70 10.05 22.25 0.22 -1.48 16 25 C -0.12 -2.07 9.96 22.02 0.22 -1.85 16 26 C -0.10 -1.80 10.03 22.30 0.22 -1.58 16 27 C -0.13 -3.23 10.07 22.32 0.22 -3.01 16 28 C 0.02 0.60 7.31 38.86 0.28 0.88 16 29 N -0.60 -17.08 5.34 -179.22 -0.96 -18.03 16 30 H 0.42 11.88 6.80 -92.71 -0.63 11.25 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.61 5.53 -2.39 -0.01 1.60 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.26 7.28 -2.39 -0.02 1.24 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.33 8.03 6.59 -89.70 -0.59 7.44 16 39 H 0.02 0.69 6.74 -2.39 -0.02 0.67 16 40 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 45 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 46 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.12 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -63.43 386.08 3.53 -59.89 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.23 Total: 28.53 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 6.05 Total: -11.57 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -4.32 Total: -121.38 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.43 3.53 -59.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577741207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.497 kcal (2) G-P(sol) polarization free energy of solvation -63.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds