Wall clock time and date at job start Tue Mar 31 2020 15:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46713 * 2 1 4 4 C 1.52994 * 109.46996 * 119.99324 * 2 1 3 5 5 H 1.09001 * 109.46916 * 61.44015 * 4 2 1 6 6 N 1.46908 * 109.46812 * 181.43330 * 4 2 1 7 7 C 1.46900 * 110.99933 * 275.40263 * 6 4 2 8 8 C 1.52997 * 109.47321 * 176.96051 * 7 6 4 9 9 H 1.09005 * 109.46862 * 305.00666 * 8 7 6 10 10 C 1.47199 * 109.46977 * 64.99863 * 8 7 6 11 11 N 6.10340 * 144.87635 * 125.46271 * 2 1 3 12 12 C 1.52997 * 109.47232 * 185.00044 * 8 7 6 13 13 C 1.50703 * 109.46661 * 174.99814 * 12 8 7 14 14 H 1.07996 * 120.00231 * 0.02562 * 13 12 8 15 15 C 1.37883 * 119.99545 * 179.72396 * 13 12 8 16 16 N 1.31515 * 120.00056 * 0.27766 * 15 13 12 17 17 Si 1.86805 * 119.99861 * 180.27746 * 15 13 12 18 18 H 1.48498 * 109.46886 * 60.00144 * 17 15 13 19 19 H 1.48500 * 109.47023 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47014 * 300.00202 * 17 15 13 21 21 C 1.50700 * 109.47731 * 301.43147 * 4 2 1 22 22 N 1.30111 * 124.94876 * 305.02856 * 21 4 2 23 23 C 1.35786 * 109.63873 * 179.97438 * 22 21 4 24 24 C 1.39745 * 133.60146 * 179.97438 * 23 22 21 25 25 C 1.36600 * 119.88578 * 180.02562 * 24 23 22 26 26 C 1.38776 * 120.67004 * 359.97438 * 25 24 23 27 27 C 1.37850 * 120.45147 * 0.04224 * 26 25 24 28 28 C 1.38834 * 119.68776 * 359.95989 * 27 26 25 29 29 N 1.36031 * 124.94964 * 124.72002 * 21 4 2 30 30 H 0.97004 * 126.35056 * 0.02562 * 29 21 4 31 31 H 1.09002 * 109.47187 * 297.50638 * 1 2 3 32 32 H 1.08998 * 109.46914 * 57.50147 * 1 2 3 33 33 H 1.08994 * 109.46703 * 177.50498 * 1 2 3 34 34 H 1.08994 * 109.46867 * 240.00220 * 2 1 3 35 35 H 1.08999 * 109.46756 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46748 * 299.99369 * 3 2 1 37 37 H 1.08991 * 109.47617 * 60.00072 * 3 2 1 38 38 H 1.00896 * 110.99941 * 39.35646 * 6 4 2 39 39 H 1.09001 * 109.46812 * 56.95917 * 7 6 4 40 40 H 1.09001 * 109.47171 * 296.96122 * 7 6 4 41 41 H 1.08999 * 109.47015 * 55.00735 * 12 8 7 42 42 H 1.08991 * 109.47315 * 294.99770 * 12 8 7 43 43 H 0.97001 * 119.99596 * 179.97438 * 16 15 13 44 44 H 1.08004 * 120.05814 * 359.97438 * 24 23 22 45 45 H 1.08007 * 119.66214 * 180.02562 * 25 24 23 46 46 H 1.08010 * 119.77137 * 180.02562 * 26 25 24 47 47 H 1.07997 * 120.15349 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6979 -1.7559 1.2365 6 7 3.5087 -0.6911 1.2667 7 6 4.0672 -1.7913 0.4695 8 6 5.5932 -1.6830 0.4490 9 1 5.8824 -0.6953 0.0897 10 6 6.1175 -1.8829 1.8099 11 7 6.5221 -2.0373 2.8601 12 6 6.1680 -2.7529 -0.4814 13 6 7.6592 -2.5687 -0.5976 14 1 8.1480 -1.7689 -0.0613 15 6 8.4004 -3.4252 -1.3840 16 7 7.8052 -4.3995 -2.0368 17 14 10.2498 -3.2017 -1.5220 18 1 10.8653 -3.3270 -0.1764 19 1 10.8085 -4.2431 -2.4213 20 1 10.5458 -1.8572 -2.0785 21 6 1.5090 -0.0314 2.4795 22 7 1.6562 1.2334 2.7470 23 6 1.0564 1.5223 3.9305 24 6 0.9121 2.6949 4.6768 25 6 0.2364 2.6675 5.8636 26 6 -0.3116 1.4845 6.3391 27 6 -0.1814 0.3157 5.6200 28 6 0.5022 0.3243 4.4116 29 7 0.8008 -0.6393 3.4691 30 1 0.5534 -1.5765 3.5068 31 1 -0.3634 0.4746 0.9115 32 1 -0.3633 0.5521 -0.8667 33 1 -0.3632 -1.0267 -0.0447 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6767 1.9564 0.8899 38 1 3.8560 0.2003 0.9461 39 1 3.6850 -1.7319 -0.5496 40 1 3.7765 -2.7443 0.9115 41 1 5.7126 -2.6598 -1.4673 42 1 5.9547 -3.7411 -0.0743 43 1 8.3265 -5.0018 -2.5902 44 1 1.3350 3.6211 4.3164 45 1 0.1267 3.5760 6.4374 46 1 -0.8434 1.4795 7.2792 47 1 -0.6094 -0.6024 5.9947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577741209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:50 Heat of formation + Delta-G solvation = 83.207174 kcal Electronic energy + Delta-G solvation = -26998.116571 eV Core-core repulsion = 23373.901736 eV Total energy + Delta-G solvation = -3624.214835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33220 -38.70881 -37.22410 -36.24303 -34.14044 -33.27525 -33.04264 -31.27441 -30.17219 -29.55023 -27.28743 -27.17724 -25.25643 -22.81167 -22.74757 -22.38441 -21.77870 -21.42143 -19.68236 -17.98938 -17.51543 -16.99429 -16.43149 -16.04551 -15.58562 -15.00069 -14.80040 -14.64592 -14.47075 -14.33805 -14.09074 -14.00234 -13.46594 -13.01287 -12.68428 -12.62722 -12.31519 -12.22434 -12.16465 -12.02832 -11.91968 -11.84397 -11.68942 -11.28472 -11.22596 -11.07551 -11.04409 -10.92615 -10.72750 -10.67988 -10.56528 -10.26955 -9.77917 -9.58723 -9.27511 -8.54482 -8.47678 -8.40607 -8.22938 -6.11614 -4.14710 0.81332 1.37569 2.60406 2.74165 3.30543 3.34620 3.38766 3.71115 3.74237 3.81706 3.95305 4.22282 4.39578 4.44765 4.58028 4.69583 4.82428 4.85471 4.90642 5.02086 5.12038 5.21212 5.26689 5.29116 5.32713 5.41321 5.51768 5.59251 5.62645 5.68115 5.78711 5.84640 5.89784 5.96732 5.99399 6.11842 6.22487 6.31539 6.32355 6.34878 6.44609 6.60772 6.74610 6.89847 7.21432 7.37093 7.39825 7.49337 7.82045 7.83585 8.20710 8.56720 8.89722 9.50934 10.99194 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002585 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.849056 B =10827.520356 C =11526.811606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.164 4.164 4 C 0.167 3.833 5 H 0.095 0.905 6 N -0.683 5.683 7 C 0.066 3.934 8 C 0.010 3.990 9 H 0.100 0.900 10 C 0.253 3.747 11 N -0.477 5.477 12 C 0.033 3.967 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.319 3.681 22 N -0.478 5.478 23 C 0.049 3.951 24 C -0.066 4.066 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.111 4.111 28 C 0.045 3.955 29 N -0.597 5.597 30 H 0.421 0.579 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.355 0.645 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.750 10.636 7.890 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.221 4.221 4 C 0.054 3.946 5 H 0.113 0.887 6 N -0.317 5.317 7 C -0.064 4.064 8 C -0.013 4.013 9 H 0.118 0.882 10 C -0.064 4.064 11 N -0.154 5.154 12 C -0.006 4.006 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.051 3.949 22 N -0.198 5.198 23 C -0.069 4.069 24 C -0.085 4.085 25 C -0.152 4.152 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.065 4.065 29 N -0.207 5.207 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.178 0.822 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.591 10.572 9.467 25.008 hybrid contribution 0.275 -0.802 -0.842 1.195 sum -20.316 9.770 8.625 24.137 Atomic orbital electron populations 1.21802 0.94916 1.01452 1.02063 1.21709 0.96525 0.98283 0.97245 1.22147 1.01103 0.95129 1.03754 1.20030 0.89419 0.97836 0.87280 0.88693 1.60493 1.03692 1.08481 1.59014 1.22165 0.93732 0.94289 0.96202 1.19221 0.92075 1.04259 0.85697 0.88166 1.28851 0.91783 0.91841 0.93943 1.80995 1.10510 1.10288 1.13561 1.19156 0.96038 0.92078 0.93279 1.21103 0.92157 1.14592 1.28672 0.92527 1.24945 0.98635 0.94975 0.95355 1.69925 1.35973 1.17053 1.30109 0.86652 0.85406 0.77929 0.78100 1.20224 1.21191 1.20016 1.23403 0.91956 0.88499 0.91031 1.70376 1.23095 1.12181 1.14135 1.19183 1.00548 0.93449 0.93750 1.20027 0.98666 0.96033 0.93778 1.20619 0.99860 0.98320 0.96373 1.20838 1.00384 0.91925 0.99605 1.19947 1.01451 0.99175 0.92638 1.18873 1.03757 0.90208 0.93706 1.43066 1.47684 1.11438 1.18512 0.74062 0.92874 0.92219 0.92874 0.89751 0.92625 0.93113 0.88604 0.82171 0.92644 0.90386 0.94357 0.95556 0.92736 0.85477 0.85587 0.85534 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.98 37.16 0.33 -0.90 16 2 C -0.12 -1.10 2.82 -90.62 -0.26 -1.36 16 3 C -0.16 -1.69 8.51 37.16 0.32 -1.38 16 4 C 0.17 1.76 2.43 -68.86 -0.17 1.60 16 5 H 0.10 0.86 7.85 -51.93 -0.41 0.46 16 6 N -0.68 -8.75 5.95 -107.95 -0.64 -9.39 16 7 C 0.07 0.90 4.84 -3.83 -0.02 0.88 16 8 C 0.01 0.17 2.33 -93.41 -0.22 -0.05 16 9 H 0.10 1.66 8.13 -51.93 -0.42 1.24 16 10 C 0.25 5.27 13.67 -20.76 -0.28 4.99 16 11 N -0.48 -10.97 18.54 42.16 0.78 -10.19 16 12 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 13 C -0.53 -13.86 8.60 -34.44 -0.30 -14.16 16 14 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.32 3.79 5.54 -154.83 -0.86 2.93 16 22 N -0.48 -6.43 8.34 -8.24 -0.07 -6.50 16 23 C 0.05 0.64 7.23 -84.70 -0.61 0.03 16 24 C -0.07 -0.72 10.05 -39.61 -0.40 -1.12 16 25 C -0.13 -1.17 9.96 -39.97 -0.40 -1.57 16 26 C -0.11 -0.92 10.03 -39.52 -0.40 -1.32 16 27 C -0.11 -1.06 10.07 -39.50 -0.40 -1.46 16 28 C 0.04 0.52 7.30 -83.99 -0.61 -0.09 16 29 N -0.60 -6.26 6.23 -8.00 -0.05 -6.31 16 30 H 0.42 3.20 8.96 -40.82 -0.37 2.83 16 31 H 0.05 0.52 7.08 -51.93 -0.37 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.76 7.42 -51.93 -0.39 0.38 16 35 H 0.05 0.59 6.22 -51.93 -0.32 0.27 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.14 5.33 -51.93 -0.28 0.86 16 38 H 0.36 4.54 6.16 -39.29 -0.24 4.29 16 39 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 40 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -32.34 386.93 -9.85 -42.19 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.93 Total: 3.39 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -4.48 Total: -10.74 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.76 Total: -56.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.34 -9.85 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577741209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.401 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds