Wall clock time and date at job start Tue Mar 31 2020 15:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53011 * 109.46359 * 2 1 4 4 C 1.52994 * 109.47132 * 119.99867 * 2 1 3 5 5 H 1.09003 * 109.47340 * 60.00670 * 4 2 1 6 6 N 1.46906 * 109.47113 * 180.02562 * 4 2 1 7 7 C 1.46901 * 110.99793 * 275.00325 * 6 4 2 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 H 1.08990 * 109.47170 * 54.99770 * 8 7 6 10 10 C 1.47196 * 109.47160 * 294.99517 * 8 7 6 11 11 N 4.94202 * 170.63260 * 294.79697 * 2 1 3 12 12 C 1.53002 * 109.46776 * 174.99873 * 8 7 6 13 13 C 1.50701 * 109.46807 * 184.99822 * 12 8 7 14 14 H 1.07998 * 120.00496 * 359.97438 * 13 12 8 15 15 C 1.37879 * 119.99849 * 180.02562 * 13 12 8 16 16 N 1.31514 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46764 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47029 * 119.99717 * 17 15 13 20 20 H 1.48494 * 109.47080 * 239.99687 * 17 15 13 21 21 C 1.50696 * 109.47391 * 300.00335 * 4 2 1 22 22 N 1.30116 * 124.95054 * 305.02712 * 21 4 2 23 23 C 1.35790 * 109.64344 * 179.97438 * 22 21 4 24 24 C 1.39731 * 133.60623 * 179.97438 * 23 22 21 25 25 C 1.36606 * 119.88924 * 179.97438 * 24 23 22 26 26 C 1.38781 * 120.67025 * 359.97438 * 25 24 23 27 27 C 1.37854 * 120.44694 * 0.03594 * 26 25 24 28 28 C 1.38830 * 119.68843 * 359.96014 * 27 26 25 29 29 N 1.36038 * 124.94954 * 124.71613 * 21 4 2 30 30 H 0.97001 * 126.35067 * 0.02562 * 29 21 4 31 31 H 1.08989 * 109.47542 * 299.99609 * 1 2 3 32 32 H 1.09005 * 109.46997 * 60.00565 * 1 2 3 33 33 H 1.09004 * 109.46635 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47249 * 240.00697 * 2 1 3 35 35 H 1.08996 * 109.46365 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47288 * 299.99473 * 3 2 1 37 37 H 1.08995 * 109.46871 * 60.00466 * 3 2 1 38 38 H 1.00898 * 110.99995 * 38.95403 * 6 4 2 39 39 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 40 40 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 41 41 H 1.08993 * 109.47416 * 304.99509 * 12 8 7 42 42 H 1.09001 * 109.46966 * 65.00241 * 12 8 7 43 43 H 0.97010 * 119.99808 * 180.02562 * 16 15 13 44 44 H 1.08003 * 120.05648 * 359.97438 * 24 23 22 45 45 H 1.08004 * 119.66469 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.77505 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.14960 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 7 3.5091 -0.7207 1.2495 7 6 4.0360 -1.8438 0.4628 8 6 5.5655 -1.8101 0.4871 9 1 5.9123 -1.8026 1.5203 10 6 6.0405 -0.5974 -0.1988 11 7 6.4061 0.3374 -0.7302 12 6 6.1141 -3.0475 -0.2262 13 6 7.6152 -3.0780 -0.0961 14 1 8.1268 -2.2931 0.4412 15 6 8.3356 -4.1074 -0.6639 16 7 7.7129 -5.0624 -1.3194 17 14 10.1964 -4.1448 -0.5032 18 1 10.6499 -2.9636 0.2741 19 1 10.6077 -5.3874 0.1984 20 1 10.8106 -4.1130 -1.8548 21 6 1.5377 -0.0109 2.4797 22 7 1.7136 1.2528 2.7349 23 6 1.1339 1.5636 3.9228 24 6 1.0223 2.7448 4.6609 25 6 0.3592 2.7412 5.8553 26 6 -0.2079 1.5737 6.3465 27 6 -0.1101 0.3966 5.6356 28 6 0.5599 0.3813 4.4198 29 7 0.8289 -0.5961 3.4826 30 1 0.5629 -1.5277 3.5309 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 3.1298 1.4427 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 3.8704 0.1587 0.9114 39 1 3.6867 -1.7620 -0.5665 40 1 3.6868 -2.7831 0.8915 41 1 5.6920 -3.9448 0.2262 42 1 5.8416 -3.0096 -1.2809 43 1 8.2197 -5.7868 -1.7186 44 1 1.4595 3.6592 4.2878 45 1 0.2755 3.6561 6.4230 46 1 -0.7293 1.5873 7.2922 47 1 -0.5529 -0.5092 6.0226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577741210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:53 Heat of formation + Delta-G solvation = 83.179628 kcal Electronic energy + Delta-G solvation = -27013.999955 eV Core-core repulsion = 23389.783926 eV Total energy + Delta-G solvation = -3624.216030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34156 -38.73064 -37.26961 -36.28239 -34.21235 -33.29160 -33.05254 -31.29488 -30.18220 -29.55890 -27.27382 -27.18344 -25.25380 -22.82641 -22.74541 -22.39180 -21.82079 -21.44259 -19.67811 -17.92968 -17.48426 -16.75663 -16.58457 -16.23731 -15.59350 -15.24768 -14.80710 -14.62953 -14.44992 -14.33013 -14.07859 -13.93049 -13.35065 -12.99476 -12.81506 -12.60314 -12.47375 -12.27067 -12.19490 -12.08063 -11.92537 -11.78936 -11.69697 -11.44160 -11.17941 -11.09140 -10.98430 -10.95108 -10.76890 -10.70359 -10.53182 -10.30495 -9.76353 -9.59410 -9.25330 -8.55941 -8.48297 -8.43474 -8.23949 -6.12087 -4.14909 0.80275 1.36519 2.59732 2.72206 3.27342 3.35724 3.40787 3.56054 3.62318 3.72836 3.94405 4.22068 4.39288 4.44312 4.57740 4.67906 4.77801 4.82277 4.89782 5.00998 5.12241 5.20475 5.26335 5.28282 5.32057 5.41173 5.47386 5.58172 5.61188 5.71192 5.78336 5.86281 5.89044 5.99731 6.05312 6.13174 6.21436 6.29917 6.32261 6.34222 6.49615 6.60966 6.74024 6.89799 7.20770 7.32906 7.39653 7.49546 7.81748 7.83512 8.20598 8.39399 8.89900 9.50848 10.98803 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.002572 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.820820 B =10882.145209 C =11347.869120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.164 4.164 4 C 0.166 3.834 5 H 0.098 0.902 6 N -0.682 5.682 7 C 0.066 3.934 8 C 0.008 3.992 9 H 0.111 0.889 10 C 0.238 3.762 11 N -0.471 5.471 12 C 0.033 3.967 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.319 3.681 22 N -0.478 5.478 23 C 0.049 3.951 24 C -0.065 4.065 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.111 4.111 28 C 0.045 3.955 29 N -0.596 5.596 30 H 0.421 0.579 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.353 0.647 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.040 0.960 42 H 0.025 0.975 43 H 0.262 0.738 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 8.614 11.755 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.221 4.221 4 C 0.053 3.947 5 H 0.116 0.884 6 N -0.315 5.315 7 C -0.063 4.063 8 C -0.014 4.014 9 H 0.129 0.871 10 C -0.079 4.079 11 N -0.148 5.148 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.210 1.210 21 C 0.051 3.949 22 N -0.198 5.198 23 C -0.070 4.070 24 C -0.085 4.085 25 C -0.152 4.152 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.065 4.065 29 N -0.206 5.206 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.176 0.824 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.312 10.184 10.962 25.228 hybrid contribution 0.324 -1.352 -0.127 1.396 sum -19.988 8.831 10.835 24.391 Atomic orbital electron populations 1.21794 0.94777 1.01478 1.02092 1.21715 0.96604 0.98296 0.97270 1.22151 1.01042 0.95158 1.03735 1.20046 0.89600 0.97699 0.87308 0.88419 1.60544 1.04042 1.08273 1.58670 1.22177 0.94032 0.94178 0.95955 1.19308 0.92534 0.89180 1.00417 0.87125 1.29257 0.92441 0.93445 0.92761 1.81033 1.09535 1.13521 1.10696 1.19164 0.96236 0.89390 0.95769 1.21182 0.91517 1.08708 1.34948 0.92421 1.24950 0.98639 0.95476 0.94915 1.69947 1.35642 1.12033 1.35437 0.86538 0.85580 0.78059 0.77935 1.19645 1.20826 1.20986 1.23382 0.91945 0.88804 0.90774 1.70408 1.23386 1.11690 1.14320 1.19190 1.00596 0.93635 0.93553 1.20033 0.98762 0.95889 0.93815 1.20621 0.99834 0.98477 0.96237 1.20842 1.00304 0.91949 0.99637 1.19943 1.01603 0.99109 0.92539 1.18868 1.03852 0.90058 0.93714 1.43058 1.47836 1.11674 1.18065 0.73998 0.92809 0.92257 0.92780 0.89994 0.92912 0.93189 0.88455 0.82391 0.94107 0.88926 0.94220 0.95661 0.92855 0.85506 0.85599 0.85527 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.95 37.16 0.33 -0.97 16 2 C -0.12 -1.24 2.82 -90.62 -0.26 -1.50 16 3 C -0.16 -1.98 8.50 37.16 0.32 -1.66 16 4 C 0.17 1.79 2.42 -68.87 -0.17 1.62 16 5 H 0.10 0.85 7.80 -51.93 -0.41 0.45 16 6 N -0.68 -8.97 6.23 -107.95 -0.67 -9.64 16 7 C 0.07 0.91 4.92 -3.82 -0.02 0.90 16 8 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 9 H 0.11 1.95 8.14 -51.93 -0.42 1.52 16 10 C 0.24 4.79 12.98 -20.77 -0.27 4.52 16 11 N -0.47 -10.27 18.54 42.14 0.78 -9.49 16 12 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 13 C -0.53 -13.86 8.60 -34.44 -0.30 -14.15 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.32 3.72 5.64 -154.82 -0.87 2.85 16 22 N -0.48 -6.48 8.27 -8.23 -0.07 -6.55 16 23 C 0.05 0.62 7.23 -84.70 -0.61 0.01 16 24 C -0.07 -0.71 10.05 -39.61 -0.40 -1.11 16 25 C -0.13 -1.13 9.96 -39.97 -0.40 -1.53 16 26 C -0.11 -0.87 10.03 -39.52 -0.40 -1.26 16 27 C -0.11 -0.99 10.07 -39.50 -0.40 -1.39 16 28 C 0.05 0.50 7.30 -83.98 -0.61 -0.11 16 29 N -0.60 -5.84 6.23 -8.00 -0.05 -5.89 16 30 H 0.42 2.81 8.96 -40.82 -0.37 2.45 16 31 H 0.05 0.54 7.22 -51.94 -0.37 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.87 7.45 -51.93 -0.39 0.49 16 35 H 0.05 0.72 6.26 -51.93 -0.32 0.39 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.28 5.28 -51.93 -0.27 1.00 16 38 H 0.35 5.18 5.35 -39.29 -0.21 4.97 16 39 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 40 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -31.61 385.97 -9.88 -41.49 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.91 Total: 4.18 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -4.49 Total: -11.65 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.73 Total: -56.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.61 -9.88 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577741210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.673 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds