Wall clock time and date at job start Tue Mar 31 2020 15:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53011 * 109.46359 * 2 1 4 4 C 1.52994 * 109.47132 * 119.99867 * 2 1 3 5 5 H 1.09003 * 109.47340 * 60.00670 * 4 2 1 6 6 N 1.46906 * 109.47113 * 180.02562 * 4 2 1 7 7 C 1.46901 * 110.99793 * 275.00325 * 6 4 2 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 H 1.08990 * 109.47170 * 54.99770 * 8 7 6 10 10 C 1.47196 * 109.47160 * 294.99517 * 8 7 6 11 11 N 4.94202 * 170.63260 * 294.79697 * 2 1 3 12 12 C 1.53002 * 109.46776 * 174.99873 * 8 7 6 13 13 C 1.50701 * 109.46807 * 184.99822 * 12 8 7 14 14 H 1.07998 * 120.00496 * 359.97438 * 13 12 8 15 15 C 1.37879 * 119.99849 * 180.02562 * 13 12 8 16 16 N 1.31514 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00049 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46764 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47029 * 119.99717 * 17 15 13 20 20 H 1.48494 * 109.47080 * 239.99687 * 17 15 13 21 21 C 1.50696 * 109.47391 * 300.00335 * 4 2 1 22 22 N 1.30116 * 124.95054 * 305.02712 * 21 4 2 23 23 C 1.35790 * 109.64344 * 179.97438 * 22 21 4 24 24 C 1.39731 * 133.60623 * 179.97438 * 23 22 21 25 25 C 1.36606 * 119.88924 * 179.97438 * 24 23 22 26 26 C 1.38781 * 120.67025 * 359.97438 * 25 24 23 27 27 C 1.37854 * 120.44694 * 0.03594 * 26 25 24 28 28 C 1.38830 * 119.68843 * 359.96014 * 27 26 25 29 29 N 1.36038 * 124.94954 * 124.71613 * 21 4 2 30 30 H 0.97001 * 126.35067 * 0.02562 * 29 21 4 31 31 H 1.08989 * 109.47542 * 299.99609 * 1 2 3 32 32 H 1.09005 * 109.46997 * 60.00565 * 1 2 3 33 33 H 1.09004 * 109.46635 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47249 * 240.00697 * 2 1 3 35 35 H 1.08996 * 109.46365 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47288 * 299.99473 * 3 2 1 37 37 H 1.08995 * 109.46871 * 60.00466 * 3 2 1 38 38 H 1.00898 * 110.99995 * 38.95403 * 6 4 2 39 39 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 40 40 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 41 41 H 1.08993 * 109.47416 * 304.99509 * 12 8 7 42 42 H 1.09001 * 109.46966 * 65.00241 * 12 8 7 43 43 H 0.97010 * 119.99808 * 180.02562 * 16 15 13 44 44 H 1.08003 * 120.05648 * 359.97438 * 24 23 22 45 45 H 1.08004 * 119.66469 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.77505 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.14960 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 7 3.5091 -0.7207 1.2495 7 6 4.0360 -1.8438 0.4628 8 6 5.5655 -1.8101 0.4871 9 1 5.9123 -1.8026 1.5203 10 6 6.0405 -0.5974 -0.1988 11 7 6.4061 0.3374 -0.7302 12 6 6.1141 -3.0475 -0.2262 13 6 7.6152 -3.0780 -0.0961 14 1 8.1268 -2.2931 0.4412 15 6 8.3356 -4.1074 -0.6639 16 7 7.7129 -5.0624 -1.3194 17 14 10.1964 -4.1448 -0.5032 18 1 10.6499 -2.9636 0.2741 19 1 10.6077 -5.3874 0.1984 20 1 10.8106 -4.1130 -1.8548 21 6 1.5377 -0.0109 2.4797 22 7 1.7136 1.2528 2.7349 23 6 1.1339 1.5636 3.9228 24 6 1.0223 2.7448 4.6609 25 6 0.3592 2.7412 5.8553 26 6 -0.2079 1.5737 6.3465 27 6 -0.1101 0.3966 5.6356 28 6 0.5599 0.3813 4.4198 29 7 0.8289 -0.5961 3.4826 30 1 0.5629 -1.5277 3.5309 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 3.1298 1.4427 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 3.8704 0.1587 0.9114 39 1 3.6867 -1.7620 -0.5665 40 1 3.6868 -2.7831 0.8915 41 1 5.6920 -3.9448 0.2262 42 1 5.8416 -3.0096 -1.2809 43 1 8.2197 -5.7868 -1.7186 44 1 1.4595 3.6592 4.2878 45 1 0.2755 3.6561 6.4230 46 1 -0.7293 1.5873 7.2922 47 1 -0.5529 -0.5092 6.0226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577741210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:52 Heat of formation + Delta-G solvation = 64.843127 kcal Electronic energy + Delta-G solvation = -27014.795086 eV Core-core repulsion = 23389.783926 eV Total energy + Delta-G solvation = -3625.011160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.11949 -39.70493 -38.33751 -37.43108 -35.77786 -34.72464 -34.02525 -32.76419 -30.91941 -30.41670 -28.60463 -28.15074 -26.52925 -24.09823 -23.67342 -23.40603 -23.13582 -22.26076 -20.51323 -18.78062 -18.52062 -18.25161 -18.11203 -17.20365 -16.72351 -16.42878 -16.10108 -15.57835 -15.39757 -15.13994 -15.04544 -14.80859 -14.73225 -14.39435 -14.26265 -13.95005 -13.69141 -13.52188 -13.19516 -13.12560 -13.06293 -12.86510 -12.74238 -12.64090 -12.51407 -12.43395 -12.37854 -12.09281 -11.98099 -11.87403 -11.76428 -11.53766 -11.38064 -11.16109 -10.60332 -10.54989 -9.49215 -9.24765 -9.01256 -8.19900 -6.27066 0.06732 0.64352 1.38062 1.41666 1.51680 1.79327 1.94669 1.97598 1.98448 2.41298 2.97300 3.14254 3.15610 3.25071 3.28495 3.65140 3.75244 3.91093 4.08832 4.19307 4.23526 4.27125 4.35460 4.41203 4.50974 4.55225 4.58437 4.69087 4.73475 4.81804 4.92797 4.93798 4.95753 4.99698 5.03478 5.14812 5.21042 5.30886 5.43321 5.48336 5.56907 5.63830 5.65431 5.76429 5.79685 5.88224 6.05079 6.19313 6.22256 6.53071 6.75551 6.87735 7.01430 7.41290 8.90959 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.002572 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.820820 B =10882.145209 C =11347.869120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.159 4.159 4 C 0.168 3.832 5 H 0.126 0.874 6 N -0.687 5.687 7 C 0.077 3.923 8 C 0.018 3.982 9 H 0.118 0.882 10 C 0.248 3.752 11 N -0.504 5.504 12 C 0.041 3.959 13 C -0.538 4.538 14 H 0.050 0.950 15 C 0.013 3.987 16 N -0.921 5.921 17 Si 0.945 3.055 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.285 1.285 21 C 0.311 3.689 22 N -0.509 5.509 23 C 0.011 3.989 24 C -0.091 4.091 25 C -0.127 4.127 26 C -0.105 4.105 27 C -0.115 4.115 28 C 0.034 3.966 29 N -0.585 5.585 30 H 0.435 0.565 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.343 0.657 39 H 0.045 0.955 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.004 0.996 43 H 0.264 0.736 44 H 0.124 0.876 45 H 0.151 0.849 46 H 0.160 0.840 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.988 7.788 13.487 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.217 4.217 4 C 0.056 3.944 5 H 0.144 0.856 6 N -0.319 5.319 7 C -0.052 4.052 8 C -0.004 4.004 9 H 0.136 0.864 10 C -0.069 4.069 11 N -0.181 5.181 12 C 0.002 3.998 13 C -0.577 4.577 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.771 3.229 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.211 1.211 21 C 0.043 3.957 22 N -0.230 5.230 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.147 4.147 26 C -0.124 4.124 27 C -0.135 4.135 28 C -0.077 4.077 29 N -0.197 5.197 30 H 0.277 0.723 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.169 0.831 46 H 0.177 0.823 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.900 9.342 12.710 26.989 hybrid contribution 0.776 -1.017 -0.591 1.409 sum -21.124 8.324 12.119 25.737 Atomic orbital electron populations 1.21719 0.93388 1.02622 1.01621 1.21676 0.97679 0.96906 0.97237 1.22088 0.99613 0.96649 1.03333 1.20153 0.87953 0.99162 0.87104 0.85628 1.60498 1.05768 1.07384 1.58285 1.22065 0.90811 0.95579 0.96780 1.19252 0.95412 0.86123 0.99610 0.86393 1.29719 0.91523 0.93499 0.92113 1.81028 1.10745 1.14647 1.11710 1.18978 0.94381 0.91471 0.94989 1.21579 0.93720 1.08141 1.34231 0.93166 1.25656 1.02430 0.95496 0.94982 1.70023 1.37005 1.12650 1.36413 0.85695 0.81210 0.78254 0.77719 1.19694 1.19736 1.21108 1.23400 0.92404 0.88615 0.91322 1.70335 1.24435 1.12967 1.15254 1.19588 1.01970 0.95130 0.94027 1.20248 1.00209 0.95589 0.95020 1.20978 0.98407 0.99957 0.95321 1.21293 0.99378 0.91221 1.00507 1.20340 1.00962 1.00570 0.91668 1.19154 1.04206 0.89727 0.94564 1.42955 1.47234 1.12221 1.17276 0.72318 0.93988 0.91985 0.90790 0.89826 0.94959 0.92916 0.89499 0.83597 0.93685 0.86454 0.94057 0.97748 0.92705 0.85849 0.83103 0.82288 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.95 71.98 0.64 -1.61 16 2 C -0.11 -2.30 2.82 -10.79 -0.03 -2.33 16 3 C -0.16 -3.96 8.50 71.99 0.61 -3.35 16 4 C 0.17 3.39 2.42 44.16 0.11 3.50 16 5 H 0.13 1.80 7.80 -2.39 -0.02 1.78 16 6 N -0.69 -17.42 6.23 -495.44 -3.09 -20.50 16 7 C 0.08 2.01 4.92 86.30 0.42 2.43 16 8 C 0.02 0.63 2.42 -12.60 -0.03 0.60 16 9 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 10 C 0.25 10.01 12.98 89.44 1.16 11.18 16 11 N -0.50 -22.29 18.54 20.00 0.37 -21.92 16 12 C 0.04 1.82 4.42 29.85 0.13 1.95 16 13 C -0.54 -28.37 8.60 25.60 0.22 -28.15 16 14 H 0.05 2.66 7.59 -2.91 -0.02 2.64 16 15 C 0.01 0.73 5.46 84.66 0.46 1.19 16 16 N -0.92 -52.08 13.29 21.45 0.28 -51.79 16 17 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 C 0.31 7.04 5.64 137.92 0.78 7.81 16 22 N -0.51 -14.08 8.27 -179.97 -1.49 -15.57 16 23 C 0.01 0.28 7.23 39.45 0.29 0.56 16 24 C -0.09 -1.99 10.05 22.25 0.22 -1.77 16 25 C -0.13 -1.98 9.96 22.02 0.22 -1.76 16 26 C -0.10 -1.39 10.03 22.31 0.22 -1.17 16 27 C -0.11 -1.77 10.07 22.32 0.22 -1.54 16 28 C 0.03 0.71 7.30 38.86 0.28 0.99 16 29 N -0.58 -10.61 6.23 -179.22 -1.12 -11.73 16 30 H 0.44 4.83 8.96 -92.71 -0.83 4.00 16 31 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.67 7.45 -2.39 -0.02 1.65 16 35 H 0.03 0.91 6.26 -2.39 -0.01 0.90 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 2.39 5.28 -2.39 -0.01 2.37 16 38 H 0.34 10.12 5.35 -89.70 -0.48 9.64 16 39 H 0.04 1.15 7.43 -2.39 -0.02 1.13 16 40 H 0.12 2.52 8.06 -2.39 -0.02 2.50 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 44 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 46 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.11 385.97 2.62 -66.49 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.31 Total: 20.98 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 5.94 Total: -11.46 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -5.03 Total: -121.50 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -69.11 2.62 -66.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577741210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.330 kcal (2) G-P(sol) polarization free energy of solvation -69.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds