Wall clock time and date at job start Tue Mar 31 2020 14:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48495 * 109.47351 * 240.00374 * 3 2 1 5 5 H 1.48510 * 109.46771 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47192 * 119.99650 * 3 2 1 7 7 C 1.37881 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52298 * 184.99732 * 10 9 7 12 12 C 1.53030 * 109.27986 * 182.43739 * 11 10 9 13 13 N 1.46846 * 109.52329 * 59.18347 * 12 11 10 14 14 C 1.46902 * 111.00077 * 174.15950 * 13 12 11 15 15 C 1.50704 * 109.47086 * 169.99502 * 14 13 12 16 16 C 1.38275 * 119.93150 * 90.00236 * 15 14 13 17 17 C 1.38119 * 120.06843 * 180.02562 * 16 15 14 18 18 C 1.38834 * 119.93028 * 0.02562 * 17 16 15 19 19 N 1.40201 * 120.06708 * 179.97438 * 18 17 16 20 20 C 1.34719 * 126.84558 * 179.97438 * 19 18 17 21 21 N 1.30848 * 108.03769 * 179.97438 * 20 19 18 22 22 C 1.33260 * 109.84056 * 0.02562 * 21 20 19 23 23 N 1.30753 * 109.00330 * 359.97438 * 22 21 20 24 24 C 1.38832 * 119.86808 * 0.25086 * 18 17 16 25 25 C 1.38120 * 119.93127 * 359.49459 * 24 18 17 26 26 C 1.46853 * 111.19389 * 298.25368 * 13 12 11 27 27 C 1.53031 * 109.52351 * 61.74365 * 26 13 12 28 28 H 0.97002 * 120.00512 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47060 * 59.99320 * 9 7 2 30 30 H 1.09004 * 109.46821 * 299.99415 * 9 7 2 31 31 H 1.09004 * 109.57356 * 305.15138 * 10 9 7 32 32 H 1.09005 * 109.50542 * 62.49632 * 11 10 9 33 33 H 1.09001 * 109.53243 * 302.40360 * 11 10 9 34 34 H 1.08996 * 109.46919 * 299.16112 * 12 11 10 35 35 H 1.09005 * 109.45558 * 179.18974 * 12 11 10 36 36 H 1.09002 * 109.46851 * 49.99626 * 14 13 12 37 37 H 1.09001 * 109.47291 * 289.99496 * 14 13 12 38 38 H 1.08001 * 119.97028 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.03707 * 180.02562 * 17 16 15 40 40 H 1.08005 * 125.97969 * 0.02562 * 20 19 18 41 41 H 1.07997 * 125.50010 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.03341 * 179.73313 * 24 18 17 43 43 H 1.08001 * 119.96642 * 180.25540 * 25 24 18 44 44 H 1.09001 * 109.46234 * 181.75927 * 26 13 12 45 45 H 1.08998 * 109.46457 * 301.72484 * 26 13 12 46 46 H 1.09001 * 109.50787 * 180.87425 * 27 26 13 47 47 H 1.09003 * 109.50330 * 60.76068 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4850 -4.9853 -0.1252 12 6 2.4791 -6.1470 -0.0635 13 7 3.2096 -6.1007 1.2096 14 6 4.0737 -7.2787 1.3639 15 6 4.9835 -7.0825 2.5492 16 6 4.5810 -7.5000 3.8045 17 6 5.4124 -7.3211 4.8929 18 6 6.6530 -6.7209 4.7256 19 7 7.4990 -6.5374 5.8285 20 6 8.7232 -5.9752 5.8229 21 7 9.1820 -5.9912 7.0481 22 6 8.2860 -6.5523 7.8593 23 7 7.2387 -6.9029 7.1594 24 6 7.0519 -6.2975 3.4650 25 6 6.2183 -6.4839 2.3796 26 6 3.9851 -4.8596 1.3318 27 6 3.0359 -3.6594 1.3117 28 1 -0.4851 0.8400 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8904 31 1 2.9319 -3.5554 -0.8392 32 1 0.9539 -5.0110 -1.0768 33 1 0.7701 -5.0741 0.6929 34 1 3.1847 -6.0657 -0.8902 35 1 1.9394 -7.0911 -0.1383 36 1 4.6735 -7.4098 0.4633 37 1 3.4569 -8.1635 1.5218 38 1 3.6153 -7.9658 3.9343 39 1 5.0977 -7.6478 5.8730 40 1 9.2359 -5.5797 4.9584 41 1 8.4052 -6.6939 8.9233 42 1 8.0147 -5.8263 3.3326 43 1 6.5298 -6.1585 1.3980 44 1 4.5393 -4.8686 2.2704 45 1 4.6836 -4.7842 0.4985 46 1 3.6129 -2.7377 1.3869 47 1 2.3459 -3.7270 2.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580565548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:31 Heat of formation + Delta-G solvation = 112.924272 kcal Electronic energy + Delta-G solvation = -26755.914677 eV Core-core repulsion = 23132.988472 eV Total energy + Delta-G solvation = -3622.926205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64318 -40.09564 -38.45740 -35.36571 -33.93955 -32.34032 -31.99893 -31.21072 -30.55041 -30.09445 -27.94715 -25.74699 -24.06143 -23.73050 -23.01325 -22.43067 -21.52388 -21.11722 -20.49857 -18.93212 -18.73879 -16.28459 -16.19473 -16.12094 -16.11517 -15.65828 -15.47870 -14.64108 -14.49326 -14.46692 -14.18789 -13.94341 -13.67344 -13.59243 -13.18574 -13.00136 -12.73194 -12.50489 -12.11565 -11.93618 -11.86395 -11.45206 -11.32569 -11.11689 -10.98110 -10.82439 -10.66920 -10.60651 -10.47282 -10.27613 -10.24757 -9.96749 -9.55692 -9.35119 -9.04727 -8.89102 -8.62672 -8.32130 -8.10811 -5.97299 -3.98859 0.35419 0.98878 1.64789 1.83384 2.53965 3.33270 3.34144 3.38179 3.39992 3.87008 4.04734 4.16760 4.40979 4.47150 4.47527 4.53838 4.64225 4.99140 5.02803 5.15803 5.27424 5.34890 5.37105 5.38509 5.49328 5.55912 5.63932 5.70480 5.72774 5.81672 5.87868 5.95381 6.01782 6.03410 6.11045 6.21263 6.28818 6.33424 6.42270 6.55513 6.65313 6.67699 6.96483 7.08415 7.19025 7.26415 7.33065 7.62124 7.70177 7.87097 8.03281 8.46231 9.07438 9.64495 11.14016 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.002670 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.332925 B =10483.392625 C =12143.959407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.090 3.910 15 C -0.074 4.074 16 C -0.076 4.076 17 C -0.109 4.109 18 C 0.140 3.860 19 N -0.325 5.325 20 C 0.260 3.740 21 N -0.540 5.540 22 C 0.203 3.797 23 N -0.314 5.314 24 C -0.131 4.131 25 C -0.086 4.086 26 C 0.051 3.949 27 C -0.099 4.099 28 H 0.260 0.740 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.222 0.778 41 H 0.222 0.778 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.071 0.929 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.606 -18.372 7.496 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.037 4.037 15 C -0.075 4.075 16 C -0.096 4.096 17 C -0.129 4.129 18 C 0.047 3.953 19 N -0.109 5.109 20 C -0.035 4.035 21 N -0.266 5.266 22 C -0.099 4.099 23 N -0.140 5.140 24 C -0.152 4.152 25 C -0.105 4.105 26 C -0.076 4.076 27 C -0.137 4.137 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.239 0.761 41 H 0.239 0.761 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.783 -18.478 8.292 24.499 hybrid contribution 1.120 1.158 -0.807 1.802 sum 14.903 -17.320 7.486 24.044 Atomic orbital electron populations 1.69949 1.06017 1.26576 1.51009 1.25014 0.94800 0.99109 0.95540 0.86724 0.79642 0.83482 0.78538 1.20348 1.21348 1.20292 1.21210 0.92838 0.91054 1.50225 0.92819 1.19108 0.93616 0.91038 0.97098 1.21237 0.97884 0.94783 0.96091 1.21691 0.97522 0.94195 1.01566 1.22126 0.96389 0.99581 0.88691 1.62130 1.27257 1.01376 1.34729 1.21109 0.93587 0.95023 0.93961 1.19942 0.94462 0.97671 0.95436 1.20989 0.99213 0.98393 0.90961 1.20925 0.92007 0.99523 1.00450 1.17563 0.91327 1.02446 0.83936 1.47758 1.13665 1.43253 1.06195 1.26200 0.84441 0.94803 0.98079 1.70634 1.31838 1.23893 1.00221 1.26174 0.87023 0.95322 1.01388 1.78145 1.24190 1.24672 0.86979 1.20732 1.01304 1.02858 0.90302 1.20939 0.93323 0.97723 0.98560 1.22344 0.95484 0.89907 0.99866 1.21543 0.97854 0.95485 0.98831 0.93031 0.96790 0.96536 0.93098 0.92063 0.91551 0.95275 0.91516 0.93980 0.89814 0.84554 0.84464 0.76149 0.76129 0.85068 0.84860 0.91136 0.95563 0.91007 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.27 8.45 -34.44 -0.29 -14.56 16 8 H 0.05 1.44 7.08 -52.48 -0.37 1.07 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.62 2.20 -90.50 -0.20 -1.82 16 11 C -0.11 -1.87 5.38 -26.65 -0.14 -2.01 16 12 C 0.06 0.80 5.42 -3.84 -0.02 0.78 16 13 N -0.53 -7.01 4.80 -236.11 -1.13 -8.14 16 14 C 0.09 0.91 5.43 -4.97 -0.03 0.89 16 15 C -0.07 -0.72 4.13 -104.59 -0.43 -1.16 16 16 C -0.08 -0.74 9.69 -39.61 -0.38 -1.12 16 17 C -0.11 -1.12 9.68 -39.40 -0.38 -1.50 16 18 C 0.14 1.42 6.70 -83.59 -0.56 0.86 16 19 N -0.32 -3.45 3.82 -11.81 -0.05 -3.49 16 20 C 0.26 2.33 11.98 -90.38 -1.08 1.25 16 21 N -0.54 -5.65 11.19 -15.75 -0.18 -5.83 16 22 C 0.20 1.96 13.03 -91.76 -1.20 0.77 16 23 N -0.31 -3.60 12.06 29.30 0.35 -3.24 16 24 C -0.13 -1.10 9.47 -39.40 -0.37 -1.48 16 25 C -0.09 -0.77 7.77 -39.61 -0.31 -1.07 16 26 C 0.05 0.74 4.57 -3.83 -0.02 0.73 16 27 C -0.10 -1.83 5.15 -26.65 -0.14 -1.97 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.04 0.40 8.02 -51.93 -0.42 -0.02 16 37 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 1.40 7.74 -52.49 -0.41 1.00 16 40 H 0.22 1.03 7.10 -52.48 -0.37 0.66 16 41 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.13 0.74 6.81 -52.48 -0.36 0.38 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.07 0.98 5.64 -51.93 -0.29 0.69 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 1.42 7.05 -51.93 -0.37 1.06 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -33.00 378.25 -12.57 -45.57 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.21 Total: -1.67 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -5.77 Total: -19.31 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.27 Total: -46.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.00 -12.57 -45.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580565548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.499 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds