Wall clock time and date at job start Tue Mar 31 2020 14:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48495 * 109.47351 * 240.00374 * 3 2 1 5 5 H 1.48510 * 109.46771 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47192 * 119.99650 * 3 2 1 7 7 C 1.37881 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47016 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52298 * 184.99732 * 10 9 7 12 12 C 1.53030 * 109.27986 * 182.43739 * 11 10 9 13 13 N 1.46846 * 109.52329 * 59.18347 * 12 11 10 14 14 C 1.46902 * 111.00077 * 174.15950 * 13 12 11 15 15 C 1.50704 * 109.47086 * 169.99502 * 14 13 12 16 16 C 1.38275 * 119.93150 * 90.00236 * 15 14 13 17 17 C 1.38119 * 120.06843 * 180.02562 * 16 15 14 18 18 C 1.38834 * 119.93028 * 0.02562 * 17 16 15 19 19 N 1.40201 * 120.06708 * 179.97438 * 18 17 16 20 20 C 1.34719 * 126.84558 * 179.97438 * 19 18 17 21 21 N 1.30848 * 108.03769 * 179.97438 * 20 19 18 22 22 C 1.33260 * 109.84056 * 0.02562 * 21 20 19 23 23 N 1.30753 * 109.00330 * 359.97438 * 22 21 20 24 24 C 1.38832 * 119.86808 * 0.25086 * 18 17 16 25 25 C 1.38120 * 119.93127 * 359.49459 * 24 18 17 26 26 C 1.46853 * 111.19389 * 298.25368 * 13 12 11 27 27 C 1.53031 * 109.52351 * 61.74365 * 26 13 12 28 28 H 0.97002 * 120.00512 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47060 * 59.99320 * 9 7 2 30 30 H 1.09004 * 109.46821 * 299.99415 * 9 7 2 31 31 H 1.09004 * 109.57356 * 305.15138 * 10 9 7 32 32 H 1.09005 * 109.50542 * 62.49632 * 11 10 9 33 33 H 1.09001 * 109.53243 * 302.40360 * 11 10 9 34 34 H 1.08996 * 109.46919 * 299.16112 * 12 11 10 35 35 H 1.09005 * 109.45558 * 179.18974 * 12 11 10 36 36 H 1.09002 * 109.46851 * 49.99626 * 14 13 12 37 37 H 1.09001 * 109.47291 * 289.99496 * 14 13 12 38 38 H 1.08001 * 119.97028 * 359.97438 * 16 15 14 39 39 H 1.08001 * 120.03707 * 180.02562 * 17 16 15 40 40 H 1.08005 * 125.97969 * 0.02562 * 20 19 18 41 41 H 1.07997 * 125.50010 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.03341 * 179.73313 * 24 18 17 43 43 H 1.08001 * 119.96642 * 180.25540 * 25 24 18 44 44 H 1.09001 * 109.46234 * 181.75927 * 26 13 12 45 45 H 1.08998 * 109.46457 * 301.72484 * 26 13 12 46 46 H 1.09001 * 109.50787 * 180.87425 * 27 26 13 47 47 H 1.09003 * 109.50330 * 60.76068 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4850 -4.9853 -0.1252 12 6 2.4791 -6.1470 -0.0635 13 7 3.2096 -6.1007 1.2096 14 6 4.0737 -7.2787 1.3639 15 6 4.9835 -7.0825 2.5492 16 6 4.5810 -7.5000 3.8045 17 6 5.4124 -7.3211 4.8929 18 6 6.6530 -6.7209 4.7256 19 7 7.4990 -6.5374 5.8285 20 6 8.7232 -5.9752 5.8229 21 7 9.1820 -5.9912 7.0481 22 6 8.2860 -6.5523 7.8593 23 7 7.2387 -6.9029 7.1594 24 6 7.0519 -6.2975 3.4650 25 6 6.2183 -6.4839 2.3796 26 6 3.9851 -4.8596 1.3318 27 6 3.0359 -3.6594 1.3117 28 1 -0.4851 0.8400 0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6240 -2.5568 0.8904 31 1 2.9319 -3.5554 -0.8392 32 1 0.9539 -5.0110 -1.0768 33 1 0.7701 -5.0741 0.6929 34 1 3.1847 -6.0657 -0.8902 35 1 1.9394 -7.0911 -0.1383 36 1 4.6735 -7.4098 0.4633 37 1 3.4569 -8.1635 1.5218 38 1 3.6153 -7.9658 3.9343 39 1 5.0977 -7.6478 5.8730 40 1 9.2359 -5.5797 4.9584 41 1 8.4052 -6.6939 8.9233 42 1 8.0147 -5.8263 3.3326 43 1 6.5298 -6.1585 1.3980 44 1 4.5393 -4.8686 2.2704 45 1 4.6836 -4.7842 0.4985 46 1 3.6129 -2.7377 1.3869 47 1 2.3459 -3.7270 2.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580565548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:30 Heat of formation + Delta-G solvation = 96.097117 kcal Electronic energy + Delta-G solvation = -26756.644358 eV Core-core repulsion = 23132.988472 eV Total energy + Delta-G solvation = -3623.655885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.34248 -40.91190 -39.55997 -36.55783 -35.19086 -34.06939 -32.70843 -32.02471 -31.61586 -31.23418 -29.44434 -26.96263 -25.30862 -24.64795 -24.09630 -23.56798 -22.33048 -22.14500 -21.59367 -20.38426 -19.42594 -18.42052 -17.11289 -16.89037 -16.78627 -16.64937 -16.44460 -16.19986 -15.55444 -15.20551 -15.11721 -15.03972 -14.85939 -14.51271 -14.42670 -14.21466 -13.84596 -13.74129 -13.39036 -13.25493 -12.99125 -12.88644 -12.64458 -12.53280 -12.27663 -12.13985 -11.98794 -11.93192 -11.76875 -11.60941 -11.23669 -11.20660 -10.99576 -10.85784 -10.68072 -10.51169 -10.01534 -9.39987 -9.05654 -8.16888 -6.26472 -0.33945 0.31687 0.94608 1.16793 1.39112 1.41864 1.49370 1.84703 2.41669 2.61073 3.15734 3.20826 3.33012 3.39215 3.73080 3.79203 3.91826 3.99685 4.07492 4.11073 4.14337 4.33919 4.36539 4.41346 4.53733 4.59899 4.67229 4.71122 4.80740 4.82076 4.87387 4.97143 4.99931 5.03944 5.10891 5.16786 5.19335 5.34287 5.35434 5.40078 5.44484 5.47755 5.58488 5.59812 5.67206 5.82737 5.90677 6.00571 6.20406 6.25301 6.31744 6.89930 6.92308 7.41819 8.94868 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.002670 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.332925 B =10483.392625 C =12143.959407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.074 4.074 11 C -0.108 4.108 12 C 0.068 3.932 13 N -0.543 5.543 14 C 0.094 3.906 15 C -0.083 4.083 16 C -0.081 4.081 17 C -0.125 4.125 18 C 0.126 3.874 19 N -0.336 5.336 20 C 0.264 3.736 21 N -0.564 5.564 22 C 0.203 3.797 23 N -0.350 5.350 24 C -0.126 4.126 25 C -0.087 4.087 26 C 0.066 3.934 27 C -0.095 4.095 28 H 0.261 0.739 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.261 0.739 41 H 0.251 0.749 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.079 0.921 45 H 0.038 0.962 46 H 0.052 0.948 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.221 -19.015 6.799 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.093 4.093 11 C -0.146 4.146 12 C -0.059 4.059 13 N -0.269 5.269 14 C -0.032 4.032 15 C -0.084 4.084 16 C -0.100 4.100 17 C -0.145 4.145 18 C 0.034 3.966 19 N -0.119 5.119 20 C -0.031 4.031 21 N -0.291 5.291 22 C -0.099 4.099 23 N -0.176 5.176 24 C -0.146 4.146 25 C -0.106 4.106 26 C -0.061 4.061 27 C -0.133 4.133 28 H 0.070 0.930 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.276 0.724 41 H 0.266 0.734 42 H 0.180 0.820 43 H 0.169 0.831 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.410 -19.145 7.593 26.334 hybrid contribution 0.280 1.346 -0.557 1.484 sum 16.689 -17.799 7.036 25.394 Atomic orbital electron populations 1.70097 1.07819 1.27581 1.52207 1.25964 0.95689 1.03239 0.95152 0.85591 0.78341 0.78508 0.79177 1.19041 1.21145 1.19277 1.21632 0.93379 0.92118 1.49547 0.92093 1.19012 0.94067 0.93214 0.94097 1.21082 0.96868 0.94320 0.96980 1.21606 0.97952 0.93991 1.01086 1.22030 0.95905 0.98798 0.89213 1.62039 1.28206 1.01909 1.34699 1.21149 0.93606 0.93761 0.94687 1.20004 0.95011 0.98265 0.95165 1.21086 0.99428 0.98497 0.90991 1.20950 0.92728 1.00436 1.00343 1.17821 0.91358 1.02812 0.84600 1.47839 1.14304 1.43784 1.06014 1.27012 0.83811 0.93410 0.98836 1.70668 1.32483 1.24866 1.01062 1.26814 0.86326 0.94179 1.02599 1.78097 1.25499 1.26179 0.87857 1.21050 1.02409 1.01974 0.89213 1.21188 0.92930 0.97075 0.99434 1.22109 0.94409 0.88779 1.00845 1.21417 0.97858 0.97039 0.96966 0.92989 0.99602 0.99763 0.93104 0.91957 0.92982 0.94248 0.88976 0.92356 0.88443 0.83949 0.85459 0.72369 0.73365 0.82046 0.83142 0.90262 0.94365 0.92887 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -29.90 8.45 25.60 0.22 -29.69 16 8 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 9 C 0.03 1.76 4.45 29.85 0.13 1.89 16 10 C -0.07 -2.97 2.20 -10.72 -0.02 -2.99 16 11 C -0.11 -3.58 5.38 30.64 0.16 -3.41 16 12 C 0.07 1.65 5.42 86.32 0.47 2.12 16 13 N -0.54 -12.99 4.80 -900.93 -4.32 -17.32 16 14 C 0.09 1.59 5.43 85.56 0.46 2.05 16 15 C -0.08 -1.41 4.13 -19.85 -0.08 -1.49 16 16 C -0.08 -1.46 9.69 22.25 0.22 -1.25 16 17 C -0.12 -2.50 9.68 22.38 0.22 -2.28 16 18 C 0.13 2.39 6.70 38.09 0.26 2.64 16 19 N -0.34 -6.74 3.82 -191.26 -0.73 -7.47 16 20 C 0.26 4.20 11.98 180.26 2.16 6.36 16 21 N -0.56 -11.03 11.19 -203.73 -2.28 -13.31 16 22 C 0.20 3.76 13.03 180.75 2.35 6.11 16 23 N -0.35 -7.93 12.06 -61.21 -0.74 -8.67 16 24 C -0.13 -1.75 9.47 22.38 0.21 -1.54 16 25 C -0.09 -1.26 7.77 22.25 0.17 -1.09 16 26 C 0.07 1.78 4.57 86.32 0.39 2.17 16 27 C -0.09 -3.50 5.15 30.64 0.16 -3.34 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 36 H 0.06 0.83 8.02 -2.39 -0.02 0.81 16 37 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 38 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.13 2.71 7.74 -2.91 -0.02 2.69 16 40 H 0.26 1.51 7.10 -2.91 -0.02 1.49 16 41 H 0.25 2.56 8.06 -2.91 -0.02 2.53 16 42 H 0.16 1.14 6.81 -2.91 -0.02 1.12 16 43 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.08 2.02 5.64 -2.39 -0.01 2.00 16 45 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.05 2.11 7.05 -2.39 -0.02 2.09 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.00 378.25 3.13 -70.86 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.95 Total: 10.41 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 7.94 Total: -23.48 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -7.79 Total: -104.32 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.00 3.13 -70.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580565548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.960 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds