Wall clock time and date at job start Tue Mar 31 2020 14:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00260 * 2 1 4 4 C 1.50697 * 109.46936 * 66.04838 * 3 2 1 5 5 H 1.08003 * 120.00347 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00247 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99438 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00437 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47275 * 59.99375 * 8 6 4 10 10 H 1.48498 * 109.47420 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47109 * 299.99390 * 8 6 4 12 12 C 1.46909 * 110.99833 * 236.04516 * 2 1 3 13 13 C 1.52992 * 109.47184 * 293.95806 * 12 2 1 14 14 H 1.08998 * 109.47396 * 59.99779 * 13 12 2 15 15 O 1.42904 * 109.47090 * 299.99789 * 13 12 2 16 16 C 1.52995 * 109.47161 * 179.97438 * 13 12 2 17 17 N 1.46902 * 109.47308 * 184.99778 * 16 13 12 18 18 C 1.46900 * 111.00308 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47207 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47267 * 64.99934 * 19 18 17 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 18 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 1.08996 * 109.47540 * 183.95371 * 1 2 3 29 29 H 1.09004 * 109.47249 * 303.95567 * 1 2 3 30 30 H 1.09004 * 109.47507 * 63.94834 * 1 2 3 31 31 H 1.09003 * 109.46962 * 186.04832 * 3 2 1 32 32 H 1.09000 * 109.47207 * 306.04576 * 3 2 1 33 33 H 0.97002 * 119.99496 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.46672 * 173.95683 * 12 2 1 35 35 H 1.09000 * 109.46798 * 53.95675 * 12 2 1 36 36 H 0.96692 * 113.99948 * 300.00022 * 15 13 12 37 37 H 1.09000 * 109.47466 * 64.99993 * 16 13 12 38 38 H 1.09002 * 109.47142 * 304.99586 * 16 13 12 39 39 H 1.00897 * 111.00090 * 303.95259 * 17 16 13 40 40 H 1.08997 * 109.47263 * 59.99365 * 18 17 16 41 41 H 1.09007 * 109.46933 * 299.99823 * 18 17 16 42 42 H 1.08994 * 109.46599 * 304.99408 * 19 18 17 43 43 H 1.09001 * 109.46881 * 185.00066 * 19 18 17 44 44 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 45 45 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 46 46 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 47 47 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5111 2.0489 6 6 2.0269 3.3494 1.5286 7 7 2.7121 4.0018 0.6150 8 14 1.5832 4.1867 3.1383 9 1 2.1759 3.4294 4.2699 10 1 2.1153 5.5730 3.1383 11 1 0.1061 4.2230 3.2867 12 6 1.9954 -0.7661 -1.1377 13 6 1.6313 -2.2426 -0.9704 14 1 0.5471 -2.3474 -0.9324 15 8 2.2008 -2.7392 0.2425 16 6 2.1790 -3.0403 -2.1556 17 7 1.7285 -4.4350 -2.0572 18 6 2.2370 -5.2331 -3.1808 19 6 1.7474 -6.6762 -3.0442 20 8 0.3244 -6.7104 -3.1697 21 6 -0.2748 -7.9269 -3.0720 22 6 0.4909 -9.0633 -2.8605 23 6 -0.1201 -10.2988 -2.7622 24 6 -1.4942 -10.4036 -2.8738 25 6 -2.2615 -9.2731 -3.0847 26 6 -1.6553 -8.0336 -3.1840 27 9 -2.4048 -6.9284 -3.3896 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3634 0.5740 0.8524 30 1 -0.3634 0.4513 -0.9233 31 1 3.0798 1.3443 -0.1083 32 1 1.5612 1.9273 -0.8309 33 1 2.9867 4.9179 0.7770 34 1 3.0796 -0.6612 -1.1756 35 1 1.5610 -0.3872 -2.0628 36 1 3.1650 -2.6772 0.2785 37 1 3.2685 -3.0087 -2.1425 38 1 1.8140 -2.6054 -3.0860 39 1 1.9992 -4.8410 -1.1741 40 1 3.3268 -5.2165 -3.1744 41 1 1.8727 -4.8135 -4.1186 42 1 2.0356 -7.0667 -2.0683 43 1 2.1960 -7.2877 -3.8271 44 1 1.5643 -8.9829 -2.7725 45 1 0.4762 -11.1833 -2.5930 46 1 -1.9690 -11.3706 -2.7969 47 1 -3.3347 -9.3575 -3.1712 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580998991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:09 Heat of formation + Delta-G solvation = -98.944695 kcal Electronic energy + Delta-G solvation = -26790.714366 eV Core-core repulsion = 22695.538857 eV Total energy + Delta-G solvation = -4095.175509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.96147 -40.34757 -38.43566 -37.83157 -36.03133 -34.98905 -32.49912 -31.28834 -31.06445 -29.90477 -28.52823 -26.99524 -25.69164 -24.04504 -23.14635 -22.81824 -21.86507 -21.20194 -20.11703 -18.86792 -17.50272 -16.98115 -16.70264 -16.44594 -16.20689 -15.93966 -15.57282 -15.43301 -14.97093 -14.83192 -14.69082 -14.37080 -14.21574 -14.10890 -13.59254 -13.39677 -13.15900 -13.11263 -12.62567 -12.38894 -12.25396 -12.03268 -11.85726 -11.74070 -11.42436 -11.29031 -11.27195 -11.08582 -10.84283 -10.72145 -10.63321 -10.25507 -9.98714 -9.59683 -9.34496 -9.10530 -8.58620 -8.52203 -8.40784 -7.15912 -6.00256 -4.01067 0.73056 0.88636 2.72304 3.19399 3.36341 3.39529 3.43388 3.81262 3.91013 4.28059 4.40632 4.44956 4.58286 4.65026 4.69126 4.74805 4.83091 4.87165 4.92114 5.03430 5.19794 5.22682 5.31869 5.37347 5.44563 5.54869 5.57235 5.65942 5.68035 5.78003 5.78220 5.97158 6.10583 6.26115 6.27461 6.37097 6.44897 6.77039 6.83685 6.99330 7.23168 7.29993 7.36328 7.82944 7.98476 8.13142 8.24220 8.58853 9.06808 9.62910 11.10668 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.001798 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.058343 B =15564.950216 C =16049.574183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.029 3.971 17 N -0.679 5.679 18 C 0.059 3.941 19 C 0.062 3.938 20 O -0.288 6.288 21 C 0.103 3.897 22 C -0.188 4.188 23 C -0.091 4.091 24 C -0.134 4.134 25 C -0.117 4.117 26 C 0.068 3.932 27 F -0.130 7.130 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.027 0.973 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.366 0.634 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.347 0.653 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -30.297 -11.049 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.101 4.101 17 N -0.311 5.311 18 C -0.071 4.071 19 C -0.013 4.013 20 O -0.200 6.200 21 C 0.056 3.944 22 C -0.206 4.206 23 C -0.109 4.109 24 C -0.153 4.153 25 C -0.136 4.136 26 C 0.048 3.952 27 F -0.108 7.108 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.212 0.788 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.166 0.834 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.285 -30.071 -10.849 32.136 hybrid contribution 1.186 1.112 0.029 1.626 sum -2.099 -28.958 -10.820 30.985 Atomic orbital electron populations 1.22252 0.88877 0.99744 1.00357 1.62021 1.06950 1.17323 1.39048 1.19740 0.95198 0.81707 0.96616 1.21142 1.34712 0.96843 1.01686 0.91828 1.25002 0.95352 0.97350 0.97044 1.69957 1.38500 1.11469 1.34139 0.86535 0.78718 0.78228 0.83776 1.20150 1.21415 1.20272 1.22698 1.00299 0.93890 0.93591 1.21981 0.99127 0.90895 0.82639 0.87801 1.86608 1.24760 1.84875 1.38696 1.22700 0.97459 0.89184 1.00764 1.60332 1.63639 1.02038 1.05117 1.22008 0.96898 0.91339 0.96836 1.22935 0.78852 0.98213 1.01322 1.86299 1.22060 1.25177 1.86498 1.19111 0.91150 0.86025 0.98135 1.21184 1.00361 0.91983 1.07116 1.21019 0.94833 0.97033 0.97999 1.20918 0.93703 0.98250 1.02406 1.21057 1.01183 0.90404 1.00947 1.17051 0.86114 0.83885 1.08114 1.91534 1.75550 1.51169 1.92586 0.93309 0.90739 0.97320 0.95455 0.99307 0.92940 0.91390 0.95280 0.78788 0.94954 0.90227 0.83357 0.92937 0.89744 0.91711 0.91393 0.84637 0.85159 0.84936 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.14 60.06 0.55 1.30 16 2 N -0.53 -11.74 4.62 -244.37 -1.13 -12.87 16 3 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 4 C -0.51 -14.53 8.46 -34.44 -0.29 -14.82 16 5 H 0.06 1.82 7.12 -52.48 -0.37 1.45 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 13 C 0.11 1.67 3.07 -26.74 -0.08 1.59 16 14 H 0.10 1.70 6.55 -51.93 -0.34 1.36 16 15 O -0.55 -8.37 12.72 -35.23 -0.45 -8.81 16 16 C 0.03 0.33 5.36 -3.83 -0.02 0.31 16 17 N -0.68 -7.45 6.45 -113.78 -0.73 -8.19 16 18 C 0.06 0.49 6.07 -3.82 -0.02 0.47 16 19 C 0.06 0.48 5.02 37.16 0.19 0.67 16 20 O -0.29 -3.26 9.95 -19.60 -0.20 -3.46 16 21 C 0.10 1.06 6.69 -39.18 -0.26 0.80 16 22 C -0.19 -1.40 9.04 -39.45 -0.36 -1.76 16 23 C -0.09 -0.56 10.04 -39.59 -0.40 -0.95 16 24 C -0.13 -0.84 10.04 -39.57 -0.40 -1.23 16 25 C -0.12 -0.93 10.02 -39.54 -0.40 -1.32 16 26 C 0.07 0.74 7.31 -39.30 -0.29 0.45 16 27 F -0.13 -1.70 17.11 2.25 0.04 -1.66 16 28 H 0.05 0.90 6.47 -51.93 -0.34 0.57 16 29 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.35 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.37 4.50 9.05 45.56 0.41 4.92 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.35 3.73 8.29 -39.29 -0.33 3.41 16 40 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.07 0.37 7.66 -51.93 -0.40 -0.03 16 44 H 0.14 0.72 6.30 -52.48 -0.33 0.39 16 45 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -33.80 391.23 -9.40 -43.19 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.63 Total: 2.77 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.92 Total: -7.53 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -1.13 Total: -47.42 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.64 Total: -12.27 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.80 -9.40 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580998991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.750 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds